LOCUS       NZ_CP023986             1431 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella variicola strain X39 plasmid pX39-9, complete sequence.
ACCESSION   NZ_CP023986
VERSION     NZ_CP023986.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05439979
            Assembly: GCF_003429625.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella variicola
  ORGANISM  Klebsiella variicola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1431)
  AUTHORS   Guo,Y., Zhai,Y., Zhang,Z., Li,D. and Gao,Z.
  TITLE     Complete Genome Sequence of a Broad Host Range Clinical Klebsiella
            variicola
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1431)
  AUTHORS   Guo,Y., Zhai,Y., Zhang,Z., Li,D. and Gao,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2017) Respiratory and Critical Care Medicine,
            Peking University People's Hospital, Xizhimen South Street on the
            11th, Beijing, Beijing 100044, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SOAPdenovo v. june-2015
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 84.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 04:42:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,084
            CDSs (total)                      :: 5,959
            Genes (coding)                    :: 5,692
            CDSs (with protein)               :: 5,692
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 267
            CDSs (without protein)            :: 267
            Pseudo Genes (ambiguous residues) :: 0 of 267
            Pseudo Genes (frameshifted)       :: 150 of 267
            Pseudo Genes (incomplete)         :: 120 of 267
            Pseudo Genes (internal stop)      :: 40 of 267
            Pseudo Genes (multiple problems)  :: 39 of 267
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP023986.1.
            Bacteria and source DNA available from Zhancheng Gao.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1431
                     /organism="Klebsiella variicola"
                     /mol_type="genomic DNA"
                     /strain="X39"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:244366"
                     /plasmid="pX39-9"
                     /geo_loc_name="China:Beijing"
                     /lat_lon="39.56 N 116.20000000 E"
                     /collection_date="2010-03-11"
                     /collected_by="Peking University People's Hospital"
     gene            complement(join(802..1431,1..252))
                     /locus_tag="BC497_RS31175"
                     /old_locus_tag="BC497_31125"
     CDS             complement(join(802..1431,1..252))
                     /locus_tag="BC497_RS31175"
                     /old_locus_tag="BC497_31125"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="WP_162893641.1"
                     /translation="MATLKLYHNGLTAGIPPMKNNHTRAKRGEVKGWSKTASRNNTKFL
                     RSVYVPDLDGAAVAFTLTIRDCPPTSDDWKKLREAFIVRLRRAGMVRLHWLTEWQKRGV
                     PHLHGIAYFPAAYEAATVVWNWTAVAEKYGANIRSQHVVPITDMQGWFMYLAKHAGRSE
                     THYQRNPEFVPAGWAKTGRVWGYCGDWPIDEPMQLDASHAAFCALRRICRNWRLADARS
                     ANYGTVQDADRKRRRRIVSARTMLRCNKLGQSACHGVSEWIPLDVSLTAAYWCMSQHPM
                     PEVDDSRHQIEI"
                     /name="replication protein"
ORIGIN
        1 gcgaacaatg aaagcctcac gaagtttttt ccaatcgtca gacgttggag ggcaatcgcg
       61 gatagtcagc gtgaacgcca cagcagcgcc atcgagatcg ggaacgtaaa cagagcgaag
      121 gaatttagtg ttattgcgag aagcagtctt agaccagccc ttaacctctc cacgcttagc
      181 gcgggtgtga ttatttttca taggcggaat cccagccgtc agaccgttat gatataattt
      241 taacgtagcc aagttagatc cttttaacgc tcaaagatgg ttaccaagcc ccggactgtt
      301 gacgcagttg cggggttttc ttttgtctaa aagacaggga aaagatacac ccaaaaaagg
      361 gaataaaaca gagtcgtgtc gagttatgta acaactaatc aagggagcca ctcagaacgc
      421 ttccagaaaa accgatgcag tgcatacatg aatacacgta tacatgtgtg aaagagggat
      481 agcagattga gactaacgtg cagtattaca tacactgcac gcccaccaac gctggaaaca
      541 gtgaacatgg acaaatagag tcaatccgag ttaaccacgt tcaaaacagg atgccgcagc
      601 ccctacgggg cagggcttcc gcacctaccc cgcagcggca gcgtcaaccc gattaaaagg
      661 cggctttaca gggcgatggc tcaccttgtg aaccatcacc taatccaagt gttggggggg
      721 gtgcgctgta caaacactaa atcggaaccc taaagggatc ccccgattta gcatttgaca
      781 gttcggcggc ggtgaacgct gtcagatttc aatctgatgg cgtgaatcgt ctacctccgg
      841 catcgggtgc tgagacatgc accagtacgc agccgtcaga gacacatcga gcggtatcca
      901 ctccgagaca ccatgacagg cagactgccc cagcttgtta cagcgcaaca ttgtccgggc
      961 ggagacaata cggcgacggc gcttgcgatc ggcatcctga acagtgccgt aattagctga
     1021 acgggcatct gcaagacgcc agttgcgaca aatgcgcctg agagcacaga acgcagcgtg
     1081 agaggcgtcg agctgcatag gctcatcaat gggccaatca ccacagtaac cccatacacg
     1141 gcccgtttta gcccatccag cagggacaaa ctcagggttg cgctgatagt gagtctcaga
     1201 acggccagcg tgcttagcca ggtacataaa ccagccctgc atatccgtga taggtacaac
     1261 atgctgagaa cggatatttg caccgtactt ttctgcaaca gcagtccaat tccagaccac
     1321 agttgccgcc tcataggcgg caggaaagta cgcaatccca tgcaaatgcg gaacgcctcg
     1381 tttctgccat tcagtgagcc agtgaagacg aaccatgcca gcacgacgaa g
//
