LOCUS       NZ_CP023979             3358 bp    DNA     circular CON 08-JAN-2024
DEFINITION  Klebsiella variicola strain X39 plasmid pX39-2, complete sequence.
ACCESSION   NZ_CP023979
VERSION     NZ_CP023979.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05439979
            Assembly: GCF_003429625.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella variicola
  ORGANISM  Klebsiella variicola
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Guo,Y., Zhai,Y., Zhang,Z., Li,D. and Gao,Z.
  TITLE     Complete Genome Sequence of a Broad Host Range Clinical Klebsiella
            variicola
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3358)
  AUTHORS   Guo,Y., Zhai,Y., Zhang,Z., Li,D. and Gao,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2017) Respiratory and Critical Care Medicine,
            Peking University People's Hospital, Xizhimen South Street on the
            11th, Beijing, Beijing 100044, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SOAPdenovo v. june-2015
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 84.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/08/2024 04:42:56
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,084
            CDSs (total)                      :: 5,959
            Genes (coding)                    :: 5,692
            CDSs (with protein)               :: 5,692
            Genes (RNA)                       :: 125
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 267
            CDSs (without protein)            :: 267
            Pseudo Genes (ambiguous residues) :: 0 of 267
            Pseudo Genes (frameshifted)       :: 150 of 267
            Pseudo Genes (incomplete)         :: 120 of 267
            Pseudo Genes (internal stop)      :: 40 of 267
            Pseudo Genes (multiple problems)  :: 39 of 267
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP023979.1.
            Bacteria and source DNA available from Zhancheng Gao.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Klebsiella variicola"
                     /mol_type="genomic DNA"
                     /strain="X39"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:244366"
                     /plasmid="pX39-2"
                     /geo_loc_name="China:Beijing"
                     /lat_lon="39.56 N 116.20000000 E"
                     /collection_date="2010-03-11"
                     /collected_by="Peking University People's Hospital"
     gene            join(2986..3358,1..158)
                     /locus_tag="BC497_RS29410"
                     /old_locus_tag="BC497_29365"
     CDS             join(2986..3358,1..158)
                     /locus_tag="BC497_RS29410"
                     /old_locus_tag="BC497_29365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(424..681)
                     /locus_tag="BC497_RS32045"
     CDS             complement(424..681)
                     /locus_tag="BC497_RS32045"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_097734894.1"
                     /translation="MEQAAFLFSGVGGMLLTEMEISNIRNITLIARRLAWINAKRTHID
                     IPSFAELLFSGQKALFFEQYNYFHSRRYTTAGTSKPPDLP"
                     /name="hypothetical protein"
     gene            complement(1495..1881)
                     /locus_tag="BC497_RS29415"
                     /old_locus_tag="BC497_29370"
     CDS             complement(1495..1881)
                     /locus_tag="BC497_RS29415"
                     /old_locus_tag="BC497_29370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     gene            2048..2983
                     /locus_tag="BC497_RS29420"
                     /old_locus_tag="BC497_29375"
     CDS             2048..2983
                     /locus_tag="BC497_RS29420"
                     /old_locus_tag="BC497_29375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_045626452.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     Typing          2049..2980
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.177"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttgcggttgc ctttgtcgta ctgatatttg ccacaagctg gtttgtgaaa acggaactac
       61 aggacaatta caacgcgtct gctgccgtct atcagaaagt ggcagacctt gaaaagctgc
      121 tgacaacgga acagaaaccg gaaaagaaaa agaactgacg cgctgcgctt gtccaacgcc
      181 tcacgttcgc acaataaatt gcgcacccgt tcaccgtttt cagccgagtt tggggcgtct
      241 tttgagactt ccggcctgaa ttcaggccgg aagttctcgc cagtcagtca ggtgcatggt
      301 tatgcatggg gctgaaaatc acggtatgcg attctgagcg gttttcggtg agaagccggg
      361 gtttttatgg ctcaggactt aaaaccgccc tgagagcctc tgaggcggtg cacgcaacgg
      421 atgttatggt aaatccggtg gctttgacgt gcctgccgtt gtgtaccgtc gtgagtgaaa
      481 ataattatat tgttcgaaga acagcgcttt ttggccggag aaaagcagtt ctgcaaacga
      541 tggtatatcg atatgagttc ttttggcatt aatccaggca agacgccggg caataagcgt
      601 aatattccgg atgttactta tttccatttc tgtcaacagc atccccccca cgccggagaa
      661 taaaaaagcc gcctgttcca tcggcaagcc ctacatcaag ggaaactacg tcttacgatt
      721 cgttttgaac cgggacgctt tgttgctgcg aatcactaac cagataatcc acgttttgtg
      781 agtgggttta ggttaaggct tcaatagaac aataatagcg ttaagtgatt agggcaacct
      841 gtgattgcta aaatgatgaa gtcttcacat catttcggtg aaggcgatat gtgttacacc
      901 acaacccgga tttgagagtc gcaaacccat attagggcaa agaaagccta atgcccccgt
      961 ggtgggtaca ccagaaaacg gggagcgaag cgaccagcat caggccgttc gtatgctgct
     1021 tcgattttgt gggtgttgcg ccagaccttg gcaatcacgc ttcaccgcaa ccgctgcctt
     1081 cactctcact ttatcaggta cgttattggt taacgtgaga ccgggtagag ccagcttctt
     1141 tcccgagctg gtcaggttcc caccgcttgc ctgtttatcc tgccggagtc cggggcgtag
     1201 acctgagagt caaggtgcag atatgggttt aatgtcgttg aatggtatta agctggtagt
     1261 gacattccta gccagccctg ctaggatttg attgtgacgt ctgatcctgg caggtatctg
     1321 caagaattag agtactcaag ccccgtgatt ctgtcacggg gcttttgtac atctggagca
     1381 agaaaattca tgctcctatc cgaaaatccc taccgctcgc cgcagccgaa cgaccgagcg
     1441 acgcgagtca gtgagcgagg aagcggcatt tctccggcct tgcagaatgc acgttcacgc
     1501 cgatgtttcc agatcgtagc gtacccgttt cagcgcagtc agtaattttt cgtggtcaaa
     1561 attcaactca cccgtttttg tatcaaccag tcccgcgtca atcatcagac cagccgccag
     1621 aaacagtctg tgattgcgtt ccctgcggtt tttctgccct gaaatccgcg cctgaaccgc
     1681 ctttttctgt gcggcatccc gttcctgcaa cgcgtttttt tcagcggttg ccagaacgtg
     1741 gagcagtcgt ctttcagtct cactgagcga agcttcatca tccagcagat cgataatctg
     1801 ccgttgccgt gccgtttttt ctcccagctt tctgatgaag gctatgcgct ttttaagcca
     1861 ttcgacgtta ctgatccgca tcgtttaact tccccatccc gatatttccg acggggaaag
     1921 tatataactt gcggtcagaa gtcgcatgac ttatctttac tcataattct ttaaattaga
     1981 gtaaagcgca cttatatgtt tctccctgcg ggcagaaaca gtgcgccctg ccgggggctg
     2041 acacaacatg gcaacgtatc atctcagcgt gaaatttggc ggcaagggta aagcccttgc
     2101 tcatgccagt tacattacgc gggaagataa gttcagccag cgccaggatc tcgagcacac
     2161 cgaacacggc aatatgccgg aatgggcgag agatgaaccc gcccatttct ggcaggctgc
     2221 ggatgcgttc gaacgtgcca acggttcaac gtacagggaa attgagatcg ctctaccccg
     2281 cgagctgaat gaagcgcagc ggctggcgct tgtccgggat tttgtgaagc aggaaacggg
     2341 cgacaaacat gcatggacgt ttgcgatcca caatccgaaa gccagcattg acggcggcga
     2401 acagccgcac gcccatatca tgatgagcca gcgcgtcaat gacggtattg agcgcagtcc
     2461 cgaacagtat ttcaggcgct ataacgccaa atttccggcg cgtggcggcg cgcgcaagga
     2521 ctcagggcat aatttaaccc ctacagaaca aaaacaggca ctgaaagccc tgcgggagcg
     2581 ctgggagcgt acgcacaacg cgcatatgaa acgatatggc tttgagcagg gttttattga
     2641 tagccggtca ctgaaaacac agggtatcga ccggaaaccg gaacagcatc tcggttttga
     2701 agcagccgga cgactggacg acagccagag gcaggatatt aaagacagcc ggacgttttc
     2761 agtcgtggat gtgcctgaac aggcgaaaca tatcgaccac agcgaccgta gctggatgaa
     2821 tgccagcggt atcgaggtaa accggaagga actggtcaga tctctgacgc atgatatctc
     2881 gcagcagtac gggcgggaga tggctgcacg ggtcacaaaa cagggaaatg ttgaaataga
     2941 gcgcgtgaaa tccctgtcac gcggattttc cataagcagg taactatggc gagcaccgaa
     3001 gaaaaacttc tcacactcct gctgtcggcg gagcatctga aagaggccgc aaaagagcag
     3061 cagaaagccg tggcggattc gctggcggtg gcaagggaaa ccctgaaagg ctaccgggaa
     3121 atatcggaca gtgtggcaca gcaggtaagg gatgaagtcc ggcaggaagt gcagaaaatg
     3181 gatgttgcgg ggctgattgg cgagcgtatc agcgctgatt ttcagcgtct ggaaaaatcc
     3241 gtcgggaaca tgaaaatcaa tgcggacgcg ctggacaagg aaatttccat tatccgcagt
     3301 aacatcatcg cggagtacaa cacgctgcgg ggttacagct ggaagtggtt tgctgggg
//
