LOCUS       NZ_CP023843             2044 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella pneumoniae strain 4/1-2 plasmid p4_1_2.4, complete
            sequence.
ACCESSION   NZ_CP023843
VERSION     NZ_CP023843.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07760932
            Assembly: GCF_003856595.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Sandegren,L.
  TITLE     Dynamics of resistance plasmids in extended spectrum
            beta-lactamase-producing Enterobacteriaceae in the gut microflora of
            patients during 1 year post UTI
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Sandegren,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (11-OCT-2017) Medical Biochemistry and Microbiology,
            Uppsala University, Husargatan 3, Uppsala SE-75123, Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC Genomics workbench v. 10
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 13x
            Sequencing Technology             :: Pacific bio + Miseq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 02:31:32
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,533
            CDSs (total)                      :: 5,409
            Genes (coding)                    :: 5,296
            CDSs (with protein)               :: 5,296
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 49 of 113
            Pseudo Genes (incomplete)         :: 65 of 113
            Pseudo Genes (internal stop)      :: 19 of 113
            Pseudo Genes (multiple problems)  :: 16 of 113
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP023843.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="4/1-2"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p4_1_2.4"
                     /geo_loc_name="Sweden"
                     /collection_date="2009"
     gene            complement(join(1819..2044,1..116))
                     /locus_tag="CRT36_RS28195"
                     /old_locus_tag="CRT36_28290"
     CDS             complement(join(1819..2044,1..116))
                     /locus_tag="CRT36_RS28195"
                     /old_locus_tag="CRT36_28290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_039819495.1"
                     /translation="MPLKGNGNKFINNGIGVHNEAQVSVELNDSTFENNKIGYLEGKLD
                     RIDELFKNETPELAKKELIEELSKAIKRGESEKAESIFEKFDFHKWIASGANIAKIVES
                     LASAMNIHS"
                     /name="hypothetical protein"
ORIGIN
        1 taccctattt tattattttc aaaagtagaa tcattaagct ccacactgac ttgggcttcg
       61 ttgtgaacgc cgataccgtt gttaatgaat ttatttccat taccttttag cggcatagtt
      121 cctccagttt tggttaaagt tagcctaatg cccccgtggt gggtatataa gaccacgggg
      181 agcgtagcga ccttcgtcaa gctcttttct tgtgtgtctc accttgcaag ggcttgattg
      241 tgtgggtgtc gtgttcgact ttcttgcaat cacacgccac cgcttactac tgccttcgtc
      301 gctcatttta tcaggtgctt gttatcgtac agcgagacgg ggtagagcct aactctttcg
      361 cggttaagtt acgttcccac caatttgcct gtttatcctg ccggagtccg gggcgtagac
      421 ctgagcgtct aaggtgcaga tatgatttta atgtcgttga atggtattaa gctggtagtg
      481 acatgactag ccagccctgc taagatttga ttgctacgtc tgatcttggc aggtatctgc
      541 aagaattaga gtaccgaagc cctgtgattc tgtcacgggg cttttgtaca tttaaagcat
      601 ctacatcaaa accatccttt ccaaacctaa gctgacaacg ctcgccgcag tactgactag
      661 cggagtctgt cagtgcgagg aagcgtcata tctgccttgc tgagataagc actgtcacac
      721 ggagtctgaa cgtgaacaaa caacaaaagt cagccctgaa catgccgaaa tttatccgtg
      781 gccagtaata ccccggtatt actctttatt tctttatttt catgtaatta cagtggattt
      841 ttaatacctg ggtattactc gtgaaaacgg aattttcctt ttttttcttt taattcatgc
      901 agttgcgatg aaaatcgcgg ctgcgttagg tgtatgacca ttttgaggtt gaaaaataat
      961 caaccatggc gggtgattta cgcaggttaa ggggagatcg tgacaaaaaa agcgttcctc
     1021 actgtatcgt tcatgcaggc atgaacgggt tatcctcccc gactacagat agactacaaa
     1081 agctaagatg agactacaga taaactacag aagctgatgc tggacaggca ttcacctggt
     1141 ataagactac agaattacat ctctccttca gcttatacgt cacttttgcg tcatttttac
     1201 atcactcctt aagttcatac gtcactttta cgtcagtttc atcctctgtg ccatttgtac
     1261 atcaccccct tcctgaacgt gctgacagcg ggttttccgg ctgcgccggc aaggtctcac
     1321 agttacgcaa taaattgccc gcccgttcac cgttttaggc aaggcgaaag atactctttt
     1381 ttggggttgg gtttgaattc aggccgaaac ctgatgccag gcagccggct gcataacgat
     1441 tcacagcctc agaaatcatc agcgccattc tgagccgttt tcagggggta agacatgcgg
     1501 ttttgaggtt caggcgggaa aatcgcgcac agcccgtctg aggggtgcgc gcaatgagac
     1561 gttatggtaa attcagaaag acaatgtggg ggggggggta tgatttcaat aattaattgc
     1621 acagctgaaa gctgcggcat tgggtacagt atagattcgt cagctgatgt ttatatgtct
     1681 ggtaatgagg ccattaattg tggagtgggc ctgcatatca acgatcgtga aatccgtcag
     1741 gctcagaaag caaagttacc tgacgggcat ttcaatatga gtattgtggc gtatttggtt
     1801 cgagtatatt tacaaaggtt acgaatgaat gttcatagca gacgctagcg actcaacgat
     1861 ctttgcaatg ttagcgccag aggctatcca cttgtgaaag tcgaattttt cgaaaataga
     1921 ctctgctttt tctgactccc cacgctttat agccttgcta agctcttcta ttaactcttt
     1981 tttagcgagt tccggcgttt catttttgaa gagttcatct atgcgatcga gcttaccctc
     2041 taag
//
