LOCUS       NZ_CP023506             1509 bp    DNA     circular CON 11-MAY-2024
DEFINITION  Morganella morganii strain FDAARGOS_365 plasmid unnamed, complete
            sequence.
ACCESSION   NZ_CP023506
VERSION     NZ_CP023506.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07312409
            Assembly: GCF_002386305.1
KEYWORDS    RefSeq.
SOURCE      Morganella morganii (Proteus morganii)
  ORGANISM  Morganella morganii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Morganellaceae; Morganella.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Campos,J., Goldberg,B., Tallon,L., Sadzewicz,L., Ott,S., Zhao,X.,
            Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S., Geyer,C.,
            Nandy,P., Hobson,J. and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Campos,J., Goldberg,B., Tallon,L., Sadzewicz,L., Ott,S., Zhao,X.,
            Nagaraj,S., Vavikolanu,K., Aluvathingal,J., Nadendla,S., Geyer,C.,
            Nandy,P., Hobson,J. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-SEP-2017) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Celera v. 8.2
            Genome Coverage                   :: 633.462x
            Sequencing Technology             :: PacBio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002386305.1-RS_2024_05_11
            Annotation Date                   :: 05/11/2024 02:47:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,902
            CDSs (total)                      :: 3,795
            Genes (coding)                    :: 3,733
            CDSs (with protein)               :: 3,733
            Genes (RNA)                       :: 107
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 62
            CDSs (without protein)            :: 62
            Pseudo Genes (ambiguous residues) :: 0 of 62
            Pseudo Genes (frameshifted)       :: 18 of 62
            Pseudo Genes (incomplete)         :: 42 of 62
            Pseudo Genes (internal stop)      :: 14 of 62
            Pseudo Genes (multiple problems)  :: 11 of 62
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP023506.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Morganella morganii"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_365"
                     /isolation_source="Stool"
                     /host="Homo sapiens"
                     /culture_collection="FDA:FDAARGOS_365"
                     /db_xref="taxon:582"
                     /plasmid="unnamed"
                     /geo_loc_name="USA: DC"
                     /collection_date="2014-07-21"
                     /collected_by="Children's National Hospital"
     gene            complement(187..627)
                     /locus_tag="CO693_RS19605"
                     /old_locus_tag="CO693_19605"
     CDS             complement(187..627)
                     /locus_tag="CO693_RS19605"
                     /old_locus_tag="CO693_19605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          1152..1408
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.186"
                     /coverage="98.0"
                     /evalue="3.06e-107"
ORIGIN
        1 tggcagctca gacgttttgg agattatcgg gcaaaggttg cgaatgacgt caatgacgtc
       61 attttgcggc gtttgcccta tcctgcatcg catcgaactg acatgcggca aaagagcaat
      121 gcaggataga caatcatggt caaaacgtta acacgtagcc ctgattgtcc gcctgccgct
      181 ggctctttaa atccggccgc cctgaatgac actaaagccg tttttgagtg cctttttgtg
      241 gttggttacg gtgcctttcc aaccaaattg ttcattcagc cggtatgttt ttgatctgcc
      301 aactttaggt ccctcaaaga tcaccccaac atccagtagc gcgcgaacgg cgcgactaac
      361 attcgttttc tgcatcccta aagtttcagc aatatctgct tgggcgatct gaatgaagtt
      421 ttcgtaatcc agatctgcaa gcatcagcat taagaccttg aattgctccc cggttaattc
      481 cttagccaag atccgtaatg cgtcttgatt catggtgaaa tgcctctgaa atgctgattt
      541 ttgtttaggg cggataacgg caacgaagcc gccgataatc tcaccctggt catttatctg
      601 agtgattctc tcgacatcct tactcatctt tgaaccctat ttgagttatc aataatgata
      661 acagtgttat cattattgat aactatgtca actgtaaccc ttagattttg ttaatgtttt
      721 tattctcctt tctgtatctt tatattaggc gtctaacgca ttgattccat tagatattta
      781 tcctagctac tctttggggt gtcggggcga agccctgacc cagtcacgta acgatagcgg
      841 agtgtatact ggcttaatcc tctgcaagcc tcgtcagccg tgatttttgc cagatttcga
      901 ggttttcacg ttcaacagct cctgcacgtt ttttgccgtc cgttcaccgt taaactccgc
      961 agaaatcggg acaggatgtg caaatgtaat accgtcaccc gcgacgatat tccgtttgcc
     1021 atctggtcag ggcttcaccc cgacaccccg catcagtgcg tacgtgctca atgtggtttc
     1081 cggttctctt ccgcttcctc gcccactcgc tcactaacgt tcggtcgctg gggctgcggc
     1141 gagcggtgcc acctctcgca tgttatcggt gattccgctg ttgttctttc ggggatgagt
     1201 cgccagatag ctcttcaaac gctctcagaa gctctcaggc gcacgaaacg ggttttaaat
     1261 gcccgtcagg gcatggaagg cgcgaaaaac gcttacagag ggtttcagga ggtcaggcgc
     1321 gccgataccc ctaaccaggg gctttcaggt cgccaggaac cgcgtcagcc ccctgcaaag
     1381 cccatttgca cggcactggc agctattcag ctggttggtg gtcgtagacc gtcgatgtta
     1441 cagcgatggg ggtctggggt tctccccaga cggtttccgg ttgcgctcaa ggcgctgccg
     1501 gaaccgtgg
//
