LOCUS       NZ_CP023253             1907 bp    DNA     circular CON 26-NOV-2023
DEFINITION  Klebsiella pneumoniae strain CCUG 70742 plasmid pKpn70742_4,
            complete sequence.
ACCESSION   NZ_CP023253
VERSION     NZ_CP023253.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07602587
            Assembly: GCF_003194285.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 1907)
  AUTHORS   Johnning,A., Karami,N., Tang Hallback,E., Muller,V., Nyberg,L.,
            Boungermino Pereira,M., Stewart,C., Ambjornsson,T., Westerlund,F.,
            Adlerberth,I. and Kristiansson,E.
  TITLE     The resistome and induced phenotype of carbapenem-resistant
            pathogens
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1907)
  AUTHORS   Johnning,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-SEP-2017) Department of Mathematical Sciences,
            Chalmers University of Technology, Chalmers University of
            Technology, Gothenburg SE-412 96, Sweden
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SPAdes v. v3.7.0
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 71.0x
            Sequencing Technology             :: Illumina MiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/26/2023 01:28:40
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,306
            CDSs (total)                      :: 5,180
            Genes (coding)                    :: 5,074
            CDSs (with protein)               :: 5,074
            Genes (RNA)                       :: 126
            rRNAs                             :: 10, 9, 9 (5S, 16S, 23S)
            complete rRNAs                    :: 10, 9, 9 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 106
            CDSs (without protein)            :: 106
            Pseudo Genes (ambiguous residues) :: 0 of 106
            Pseudo Genes (frameshifted)       :: 42 of 106
            Pseudo Genes (incomplete)         :: 61 of 106
            Pseudo Genes (internal stop)      :: 15 of 106
            Pseudo Genes (multiple problems)  :: 10 of 106
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP023253.1.
            Bacteria and source DNA available from Klebsiella pneumoniae CCUG
            70742.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1907
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="CCUG 70742"
                     /isolation_source="urine"
                     /host="Homo sapiens"
                     /culture_collection="CCUG:70742"
                     /db_xref="taxon:573"
                     /plasmid="pKpn70742_4"
                     /geo_loc_name="Sweden: Gothenburg"
                     /lat_lon="57.6823 N 11.9613 E"
                     /collection_date="2012-01-20"
                     /collected_by="Clinical Microbiology Laboratory,
                     Sahlgrenska University Hospital"
     gene            complement(<3..296)
                     /locus_tag="CLH64_RS27205"
                     /old_locus_tag="CLH64_27055"
                     /pseudo=""
     CDS             complement(<3..296)
                     /locus_tag="CLH64_RS27205"
                     /old_locus_tag="CLH64_27055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     gene            complement(1087..>1905)
                     /locus_tag="CLH64_RS27210"
                     /old_locus_tag="CLH64_27060"
                     /pseudo=""
     CDS             complement(1087..>1905)
                     /locus_tag="CLH64_RS27210"
                     /old_locus_tag="CLH64_27060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020240588.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /name="protein rep"
     Typing          1170..1361
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="97.409"
                     /coverage="100.0"
                     /evalue="6.18e-88"
ORIGIN
        1 gactggtaga aacgggcttg ccacatcagg gagcgcctcc actggcagac aggacagtgc
       61 cggacacggc agaaatgcgc ctcacgcagc ctcaggcgcg tttctccggt ttctttgagg
      121 gtagaccacc cgaaccgcag caaaccgcca caggaggcca tacgcgcccc gtagcgctca
      181 tattcagccg caagcaggta aatccctcca acgtcgtcag aaacgcttct gtgagcgtcc
      241 cagggcgcat ctgcggggga ataatccgtg aggttctgga gtttaggatt ttgcatgcac
      301 accgccccat actgggcgat ggctcatttg acgtgttatc attgccgtat cacctgtgtt
      361 gtctgtcgca aaatagaatt cctacaggtg gtcacgcccc cgaacgattg ccctcgttgc
      421 gggggtcgct tttaacgcga ccactccaaa cagagtactt ccaaacccat ttccaagcaa
      481 atcacctctc aggccttgcc gcacaagggc tgaggccgaa ttccaatccc agagttatcc
      541 cttaagtata aatacaagga acgcgcgcga attttccacc taatttcccc gtacatccgc
      601 cccgccagaa aacccaaaaa cgcttatcag gtggttgcgc tcactgcgtg atcacaacca
      661 cctgccggca gtgttttatg ggtgcagtcg tcaatcacta aatcggaacc cactggcaag
      721 ccagcgggac cccacgattt agcgtttgac gattccagta acggcgaacg ctgacagatt
      781 tcaatctggc ggcgtgaggt gttggcaggg tgtcggggcg cagccctgac ggatcgtttt
      841 tggtaccggc atcgtgatgg cggtactcca aaaacacatc ttgtcccgtt aaaaaaatcc
      901 gtattacgga tcgcaaaacc ctaagttcgg attccgaact cagtaagcga ttggcgtcac
      961 tttgcggcgg tagccctatc ctgcatcgga gtaaaatcaa tcggacaaga tctgactttg
     1021 gtacaccgcc accaaggtga cggatgccca aagtcctcat ggtcagggcg cagccccgac
     1081 accccgttac tctgattcgg ttttatcttt cgtcggtgag cgacggtact ttctgacctc
     1141 agttttccac tcaaacgcga tgcgggaacc gtcatcgtcg ccctcggaaa tatcatcccc
     1201 gatcaccatg tctgcgtcgg tttcctgatc gagcttcagt acgtctttga gtgcgccgcc
     1261 ggtcgccaca aatcggcgct tgtgcgtctg gcgggtcagt tcgaggaacc attcaggatc
     1321 ggccaccatg tcagccggct ttgtggaata tttcagggtt tcggccactg cgccgcgcac
     1381 cagttcggcg gtcgcgcagg ccagcgattc gccgtccttc ggcttccggg gttttactgc
     1441 ccggacatcg acattcggat cgtaatccac ccgaagacac ccacgccaca gatcaaccca
     1501 gcgctcatgc ttgatgtaat cacgcccaga caacatcgat ggcggcacca tcatcagggt
     1561 gtgaaagtgc gggtgtgcgc tgccgtcgct cccgcgggtg acttccgtgg tacgtatcca
     1621 gccctgcact ggactgaact ccttgcgatc cttcagtcgc tggaaacctg cgttcatccg
     1681 gttcagcgtc tcgcccagct ccccgatcgc acagttacgc acagtcaggg tcaggaacat
     1741 ccagcgggca tcgggataat ccgccacgat acgcggcagg gactggtaga aacgggcttg
     1801 ccacatcagg gagcgcctcc actggcagac aggacagtgc cggacacggc agaaatgcgc
     1861 ctcacgcagc ctcaggcgcg tttctccggt ttctttgagg gtagacc
//
