LOCUS       NZ_CP022501             1857 bp    DNA     circular CON 30-NOV-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505
            plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP022501
VERSION     NZ_CP022501.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03485833
            Assembly: GCF_001448485.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505
  ORGANISM  Salmonella enterica subsp. enterica serovar Kentucky str. SA20030505
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 1857)
  AUTHORS   Yoshida,C., Brumwell,S.L., Lingohr,E.J., Ahmad,A., Blimkie,T.M.,
            Kogan,B.A., Pilsworth,J., Rehman,M.A., Schleicher,K.L.,
            Shanmugaraj,J., Kropinski,A.M. and Nash,J.H.
  TITLE     Draft Whole-Genome Sequences of 25 Salmonella enterica Strains
            Representing 24 Serovars
  JOURNAL   Genome Announc 4 (2), e01718-15 (2016)
   PUBMED   26941156
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1857)
  AUTHORS   Robertson,J., Yoshida,C., Gurnik,S. and Nash,J.H.E.
  TITLE     Salmonella reference genomes for public health
  JOURNAL   Unpublished
REFERENCE   3  (bases 1 to 1857)
  AUTHORS   Robertson,J., Yoshida,C., Gurnik,S. and Nash,J.H.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2017) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
REFERENCE   4  (bases 1 to 1857)
  AUTHORS   Yoshida,C., Brumwell,S.L., Lingohr,E.J., Daignault,D. and Nash,J.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-AUG-2015) Public Health Agency of Canada, Laboratory
            for Foodborne Zoonoses, 110 Stone Road West, Guelph, Ontario N1G3W4,
            Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. v 1.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 95.0x
            Sequencing Technology             :: Illumina MiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/30/2023 14:28:00
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,666
            CDSs (total)                      :: 4,545
            Genes (coding)                    :: 4,367
            CDSs (with protein)               :: 4,367
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 14
            Pseudo Genes (total)              :: 178
            CDSs (without protein)            :: 178
            Pseudo Genes (ambiguous residues) :: 0 of 178
            Pseudo Genes (frameshifted)       :: 88 of 178
            Pseudo Genes (incomplete)         :: 111 of 178
            Pseudo Genes (internal stop)      :: 36 of 178
            Pseudo Genes (multiple problems)  :: 51 of 178
            Pseudo Genes (short protein)      :: 1 of 178
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP022501.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1857
                     /organism="Salmonella enterica subsp. enterica serovar
                     Kentucky str. SA20030505"
                     /mol_type="genomic DNA"
                     /strain="SA20030505"
                     /serovar="Kentucky"
                     /isolation_source="cecal content"
                     /host="Gallus gallus"
                     /sub_species="enterica"
                     /db_xref="taxon:1242102"
                     /plasmid="unnamed1"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2002-11-27"
                     /collected_by="Laboratory for Foodborne Zoonoses, Public
                     Health Agency of Canada, Saint-Hyacinthe, QC"
                     /serogroup="C2"
ORIGIN
        1 ccctgcacac ctgtatgcat tatgcttgct atacacgcgg acacaggcat atcatttatt
       61 ttttgccatg tccattaatt gttcaataat tttactcacg gtatttaatt tgatgttgtg
      121 ttatatagaa ttggaattaa acttataagg atgcttagac gttgcattat aaaagtttat
      181 gtactaagta tttaagacat tggcatatga ttatagcttg acattattaa aaattaatta
      241 attaaatctc acacaatact tattcaagac atttttacta agataaccaa aggaatgcga
      301 acaaaataat acttaaaata taagacttag aagtaatatg atccaatagt tacatatagt
      361 acactaagtt cctaaattat ataactttaa aacaaagtta cgaaatttgg aaataatttt
      421 atttaatcat attttcataa taatgaaata ctgtttattt cagtggcgaa aagagataat
      481 acgattttat agtgatagaa tatccttgaa atatctaaag ataaaattag aaactttctc
      541 ttttcgctgt aaagctatat gacttaaaaa taacttatac gcaaagtata ttgcagtgga
      601 aacccaagag tatagtagcc atgtaatctc gggttcgaaa ctacacgccg cgcacgtagt
      661 cagatggtct gaaacttgtc tggggctgtt tgttgacgga tggagacttc actaagtggc
      721 gtcaggcgat gcgcacacac gggactcaat cccgtagcat gttatgtgtc gttcgaaact
      781 cgtgcgttcg agatttacgc cacattgccg gctggtccaa ggacgttatc taccagatga
      841 tacggtccaa ttcgtaagtt tgactcacat agtcgcgaac cgcggagctg gagaacaata
      901 attaccggat gattagttga ccatacgcac tatcatgctc cgtgactcag tttccgccat
      961 ggagttctca cagccccgtg tgtaccataa ctgcagtaag taaggacctt gttcggaggc
     1021 cgactcgtat ttcatatgat cttagtctcg ccaccttatc gcacgaattg ggggtgtctt
     1081 ttagccgact ccggcacgat ccgccgggaa gttactcgac cagttgcggg acgccctagt
     1141 atgttcgtat tacgttcgat gcgtaagcac cccagagatt tttggcggac gtttcggtaa
     1201 atcatagtag aaccggagcg gtaaagctat tgataacacg cagggacgag ccagtcgtct
     1261 aagctcctca ggggtaccgt tcgccggact acagcctgtc cccggcggcc gcaactgggc
     1321 tgcgatccag cccccgctcc aaaaggatga ctcgaccttg cgcctcgcgt actctgctct
     1381 cgagctgtct ccgtgggcaa tgccggctca cgctgtgggg aaccctggac gcccgggccg
     1441 agccgacgtg gccccgccca ggccttttcg tcgatcgcag ctatgtaccc tgtgctggcc
     1501 agcgctactg cgccggccat tagcggtgcg ctctcgactc ggccccaacg tagacggcgt
     1561 cgctggccgg attcaaagaa gtgagctact accatcgcgt gacgccctgc gggcctgagt
     1621 aaccgtgcac gaaggacacc ccgttcgtgg cgggggttgc ctccgcgacg gtcgccaacg
     1681 ttgggggtcg gtgcattcag gcgacgaggg accgctggtt tccggagagc ggcctgtgct
     1741 cacacaggtg cggtccatgg ggcctgtgga tccggttctc ccacgcgtag cgccggcgtt
     1801 agcatggacg ctaaataagt atacgccggc aaagggagtg taggccggcc cgagggc
//
