LOCUS       NZ_CP022066             3304 bp    DNA     circular CON 07-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Hadar strain
            FDAARGOS_313 plasmid unnamed1, complete sequence.
ACCESSION   NZ_CP022066
VERSION     NZ_CP022066.2
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06173326
            Assembly: GCF_002209205.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Hadar
  ORGANISM  Salmonella enterica subsp. enterica serovar Hadar
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3304)
  AUTHORS   Zhao,S., McDermott,P., Tallon,L.J., Sadzewicz,L., Sengamalay,N.,
            Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Vyas,G., Nadendla,S.
            and Sichtig,H.
  TITLE     FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS):
            Supporting development and validation of Infectious Disease Dx tests
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3304)
  AUTHORS   Zhao,S., McDermott,P., Tallon,L.J., Sadzewicz,L., Sengamalay,N.,
            Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Vyas,G., Nadendla,S.
            and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2017) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 3304)
  AUTHORS   Zhao,S., McDermott,P., Tallon,L., Sadzewicz,L., Sengamalay,N.,
            Ott,S., Godinez,A., Nagaraj,S., Vavikolanu,K., Nadendla,S.,
            George,J. and Sichtig,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUN-2017) Center for Devices and Radiological Health,
            US Food and Drug Administration, 10903 New Hampshire Avenue, Silver
            Spring, MD 20993-0002, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: SMRT v. 2.3.0, HGAP v. 3.0
            Genome Coverage                   :: 412.341x
            Sequencing Technology             :: PacBio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/07/2024 01:43:16
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,872
            CDSs (total)                      :: 4,745
            Genes (coding)                    :: 4,583
            CDSs (with protein)               :: 4,583
            Genes (RNA)                       :: 127
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 19
            Pseudo Genes (total)              :: 162
            CDSs (without protein)            :: 162
            Pseudo Genes (ambiguous residues) :: 0 of 162
            Pseudo Genes (frameshifted)       :: 55 of 162
            Pseudo Genes (incomplete)         :: 123 of 162
            Pseudo Genes (internal stop)      :: 24 of 162
            Pseudo Genes (multiple problems)  :: 36 of 162
            Pseudo Genes (short protein)      :: 1 of 162
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP022066.2.
            On Mar 13, 2018 this sequence version replaced NZ_CP022066.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3304
                     /organism="Salmonella enterica subsp. enterica serovar
                     Hadar"
                     /mol_type="genomic DNA"
                     /strain="FDAARGOS_313"
                     /serovar="Hadar"
                     /isolation_source="Ground turkey"
                     /host="Environment"
                     /sub_species="enterica"
                     /culture_collection="FDA:FDAARGOS_313"
                     /db_xref="taxon:149385"
                     /plasmid="unnamed1"
                     /geo_loc_name="USA: MN"
                     /collection_date="2011"
                     /collected_by="FDA CVM"
     gene            join(3072..3304,1..298)
                     /locus_tag="CEP91_RS00005"
                     /old_locus_tag="CEP91_25455"
     CDS             join(3072..3304,1..298)
                     /locus_tag="CEP91_RS00005"
                     /old_locus_tag="CEP91_25455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570822.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDIAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTELKPEKKKN"
                     /name="hypothetical protein"
     gene            complement(565..987)
                     /locus_tag="CEP91_RS00010"
                     /old_locus_tag="CEP91_25460"
     CDS             complement(565..987)
                     /locus_tag="CEP91_RS00010"
                     /old_locus_tag="CEP91_25460"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570825.1"
                     /translation="MKLKFIPIFLFIVTLQAAHSSGIGSTPPPQGKVIYTMNCTFVDDT
                     GKAIGKSQKYILRKGGDGREQMEITPQENAHVPPPIYIQKTSGAYTNGGFKTFYWNNTV
                     RMTVIRGDKTTVEIEFIDSPAISIAKATCDNPVYLP"
                     /name="hypothetical protein"
     gene            complement(1582..1968)
                     /locus_tag="CEP91_RS00015"
                     /old_locus_tag="CEP91_00010"
     CDS             complement(1582..1968)
                     /locus_tag="CEP91_RS00015"
                     /old_locus_tag="CEP91_00010"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_033570824.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETDRR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHKLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     gene            2134..3069
                     /locus_tag="CEP91_RS00020"
                     /old_locus_tag="CEP91_00015"
     CDS             2134..3069
                     /locus_tag="CEP91_RS00020"
                     /old_locus_tag="CEP91_00015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_033570823.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNL
                     TPTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKAQGIDRKPEQHLGFEAAGR
                     LDDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQY
                     GREMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     Typing          2135..3066
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.498"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttttcagcgt ctggaaaaat ccgtcgggaa catgaaaatc aatgcggacg cgctggacaa
       61 ggaaatttcc attatccgca gtaacatcat cgcggagtac aacacgctgc ggggttacag
      121 ctggaagtgg tttgctgggg ttgcggttgc ctttgtcgta ctgatatttg ccacaagctg
      181 gtttgtgaaa acggaactac aggacaatta caacgcgtct gctgccgtct atcagaaagt
      241 ggcagacctt gaaaagctgc tgacaacgga actgaaaccg gaaaagaaaa agaactgacg
      301 cgctgcgctt gtccaacgcc tcacgttcgc acaataaatt gcgcacccgt tcaccgtttt
      361 cagccgggtt tggggcgtct tttgagactt ccggcctgaa ttcaggccgg aagttctcgc
      421 cagtcagtca ggtgcatggt tatgcatggg gctgaaagtc acggtatgcg attctgggcg
      481 gttttcggtg agaaaacggg ggtttttatg gctcagggcg taaaaccgcc ctgagcgcgt
      541 ctgagcggtg cgcgtaatga cgcgttatgg taaataaaca ggattgtcgc atgtggcttt
      601 cgctatcgaa atcgcagggg aatcaataaa ctctatttcc acagtggttt tatcgcccct
      661 gatcacggtc atccgtactg tattgttcca gtagaaggtt ttgaacccac cattggtgta
      721 agcaccactt gttttttgta tgtatatggg gggggggaca tgtgcgtttt cttgtggagt
      781 tatctccatt tgctcacgac catccccccc ctttcgcagg atgtattttt gcgacttacc
      841 aatagcctta ccggtatcat cgacaaaagt gcaattcatt gtgtatatca ccttcccttg
      901 aggggggggc gtgctaccaa ttccactgga atgagcggct tgtaacgtaa cgataaataa
      961 aaaaataggt atgaatttta gcttcacgta gtgtctccgt tgcaaaaaaa gcctaatgcc
     1021 cccgtggtgg gtatataaaa atcacgggga gcagagcgac cttcgtccag ctcgtttctt
     1081 gtgtctctca ccctgcaagg ggcttgattg tgtgggtgaa gtgtcagacc ttagcaatca
     1141 cacttcgccg cttaccgctg ccttgttcgc tcattttatc aggtgccagt tatcgtactg
     1201 cgagacgggg tagagcttaa ctctttcgcg gttaagttac gtttccaccg tttgcctgtt
     1261 tatcctgccg gagtccgggg cgtagacctg agcgtctaag gtgcagatat gagtttaatg
     1321 tcgttgaatg gtattaagct ggtagtgaca aggctagcca gccctgctag gattggattg
     1381 ctacgtctga tcctggcagg tatctgcgaa gaattagagt accgaagccc tgtgattctg
     1441 tcacggggct tttgtacatc tggagcaaga aaattcatgc tcctatccga aaatccctac
     1501 cgctcgccgc agccgaacga ccgagcgtag cgagtcagtg agcgaggaag cggcatttct
     1561 ccgcccttgc agaatgcacg ttcacgccga tgtttccaga tcgtagcgta cccgtttcag
     1621 cgcagtcagt aatttttcgt ggtcaaaatt caactcaccc gtttttgtat caaccagtcc
     1681 cgcgtcaatc atcagaccag ccgccagaaa tagtttgtga ttgcgttccc tgcggttttt
     1741 ctgccctgaa atccgcgcct gaaccgcctt tttctgtgcg gcatcccgtt cctgcaacgc
     1801 gtttttttca gcggttgcca gaacgtggag cagtcgtctg tcagtttcac tgagcgaagc
     1861 ttcatcatcc agcagatcga taatctgccg ttgccgtgcc gttttttctc ccagctttct
     1921 gatgaaggct atgcgctttt taagccattc gacgttactg atccgcatcg tttaacttcc
     1981 ccatcccgat atttccgacg gggaaagtat ataacttgcg gttagaagtc gcatgactta
     2041 tctttactct aattctttaa attagagtaa agcgcactta tatgtttctc cctgcgggca
     2101 gaaacagtgc gccctgccgg gggctgacac aacatggcaa cgtatcatct cagtgtgaaa
     2161 tttggcggca agggtaaagc ccttgctcat gccagttaca tcacgcggga agataagttc
     2221 agccagcgcc aggatctcga gcacaccgaa cacggcaaca tgccggaatg ggcgagagat
     2281 gaacccgccc atttctggca ggctgcggat gcgttcgaac gtgccaacgg ttcaacgtac
     2341 agggaaattg agatcgccct cccccgcgag ctgaatgaag cgcagcggct ggcgcttgtc
     2401 cgggattttg tgaagcagga aacgggcgac aaacatgcat ggacgtttgc gatccacaat
     2461 ccgaaagcca gcattgacgg cggcgaacag ccgcacgccc atatcatgat gagccagcgc
     2521 gtcaatgacg gtattgagcg cagtcccgaa cagtatttca ggcgctataa cgccaaattt
     2581 ccggcgcgtg gcggcgcgcg caaggactca gggcataatt taacccctac agaacaaaaa
     2641 caggcactga aagccctgcg ggagcgctgg gagcgtacgc acaacgcgca tatgaaacga
     2701 tatggctttg agcagggttt tattgatagc cggtcactga aagcacaggg tatcgaccgg
     2761 aaaccggaac agcatctcgg ttttgaagca gccggacgac tggacgacag ccagaggcag
     2821 gatattaaag acagccggac gttttcagtc gtggatgtgc ctgaacaggc gaagcatatc
     2881 gaccacagcg accgtagctg gatgaatgcc agcggtatcg aggtaaaccg gaaggaactg
     2941 gtcagatctc tgacgcatga tatctcgcag cagtacgggc gggagatggc tgcacgggtc
     3001 acaaaacagg gaaatgttga aatagagcgc gtgaaatccc tgtcacgcgg attttccata
     3061 agcaggtaac tatggcgagc accgaagaaa aacttctcac gctcctgctg tcggcggagc
     3121 atctgaaaga ggccgcaaaa gagcagcaga aagccgtggc ggattcgctg gcggtggcaa
     3181 gggaaaccct gaaaggctac cgggaaatat cggacagtgt ggcgcagcag gttcgggatg
     3241 aagtccggca ggaagtgcag aaaatggata ttgcggggct gatcggcgag cgtatcagcg
     3301 ctga
//
