LOCUS       NZ_CP021910             6863 bp    DNA     circular CON 17-FEB-2024
DEFINITION  Salmonella enterica subsp. enterica strain ST1120 plasmid pST1120,
            complete sequence.
ACCESSION   NZ_CP021910
VERSION     NZ_CP021910.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06622672
            Assembly: GCF_002201855.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica
  ORGANISM  Salmonella enterica subsp. enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 6863)
  AUTHORS   Kim,S., Kim,E., Hahn,T.-W. and Yoon,H.
  TITLE     The complete plasmid sequence of Salmonella Typhimurium ST1120_1p
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 6863)
  AUTHORS   Kim,S., Kim,E., Hahn,T.-W. and Yoon,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JUN-2017) Department of Molecular Science and
            Technology;Department of Applied Chemistry and Biological
            Engineering, Ajou University, 206 World cup-ro, Yeongtong-gu, Suwon
            16499, Republic of Korea
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 3.0
            Genome Coverage                   :: 205
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/17/2024 05:26:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,729
            CDSs (total)                      :: 4,604
            Genes (coding)                    :: 4,512
            CDSs (with protein)               :: 4,512
            Genes (RNA)                       :: 125
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 17
            Pseudo Genes (total)              :: 92
            CDSs (without protein)            :: 92
            Pseudo Genes (ambiguous residues) :: 0 of 92
            Pseudo Genes (frameshifted)       :: 34 of 92
            Pseudo Genes (incomplete)         :: 65 of 92
            Pseudo Genes (internal stop)      :: 19 of 92
            Pseudo Genes (multiple problems)  :: 24 of 92
            Pseudo Genes (short protein)      :: 1 of 92
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP021910.1.
            Bacteria and source DNA available from Hyunjin Yoon.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6863
                     /organism="Salmonella enterica subsp. enterica"
                     /mol_type="genomic DNA"
                     /strain="ST1120"
                     /isolation_source="pig feces"
                     /sub_species="enterica"
                     /db_xref="taxon:59201"
                     /plasmid="pST1120"
                     /geo_loc_name="South Korea: Kangwon-do wonju"
                     /lat_lon="37.34 N 127.92 E"
                     /collection_date="2000-10"
                     /collected_by="Kangwon National University"
     gene            1..192
                     /locus_tag="ST1120_RS24810"
                     /old_locus_tag="ST1120_1p001"
     CDS             1..192
                     /locus_tag="ST1120_RS24810"
                     /old_locus_tag="ST1120_1p001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_048228005.1"
                     /translation="MNKQQQTALNMARFIKSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFSDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            862..975
                     /locus_tag="ST1120_RS25280"
     CDS             862..975
                     /locus_tag="ST1120_RS25280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072071404.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLLPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(1373..4009)
                     /locus_tag="ST1120_RS24825"
                     /old_locus_tag="ST1120_1p002"
     CDS             complement(1373..4009)
                     /locus_tag="ST1120_RS24825"
                     /old_locus_tag="ST1120_1p002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012443154.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA];
                     GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 -
                     hydrolase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="WP_088365282.1"
                     /translation="MAKKPKSVGSEKLLFNRLKQFDEPGLFHDNYQTPDYIQENLKDAL
                     RPYQHGALRYLHYTQRKRDDALLHYRHLLFHMATGAGKTMVMAGTILYLFKELGYQNFI
                     FFVHTDAIIQKTRENLLNPQSPKYLFSQELEIDGEKITIEPIETFPSIPERNTIYLKLS
                     TIHKMHDELNSYRENSITYEDLKEIPLVLLGDEAHHFNAGTKARGKSKTSPENEEQTWE
                     RTIENILNLRPDNRLFEFTATIDLANKDIGQKYRGKVVYQYDLKQFMSDGYSKKVMLLE
                     ANQNDSDKMLDAVLLSQYRKLTAADHGITGFKPVILFKSNKIAISKAKQEEFSQLIAAM
                     TPESVRRHLANKKLQLSSDTSIWHKVIQRYANSDLVTVTGQIQEDFNDFNLLNVNKSDL
                     LEENPVLLNTLEEVDNPVRAVFAVAKVNEGWDVLNLYDIVRISEQASSSKTSTDSEAQL
                     IGRGARYYPFIYDGQRSFTRRFDNSTKDLSVLEQLHYHTINEPAYIKTLHASLEQADID
                     VHQDGGGTIEHARLKEDFKKSAVYQAGKLYFNEVEEIESSSRNWETYSLETRFEIPYQT
                     VCEESLDNLTGTKTGITKPELLVLDERFYRKAMQRISFYALDNLQRFFPKLTGIREFIR
                     SDAYLGKLKITVIVPQSLDFTTVPAKDKLHLLETVLLRISENVRRNDQKVKGTYRFISQ
                     PVKEVIKDYSLHIDPSVVINQKITAVPTIGKKWYVYDNAILNQLEHRLIKTLEAFMPKL
                     KARYDDIYVLRNDEQSTRFKLTEFGGVRGFMPDFIMILTRHSDNTYWQVFLEPKGDDRL
                     LDDAWKERMLETLNDRERIVIDENEHVRLVGIKFFANSQMDVFVSDMQNKLNDGESLET
                     SSLSLPL"
                     /name="DEAD/DEAH box helicase family protein"
     gene            complement(4014..5996)
                     /locus_tag="ST1120_RS24830"
                     /old_locus_tag="ST1120_1p003"
     CDS             complement(4014..5996)
                     /locus_tag="ST1120_RS24830"
                     /old_locus_tag="ST1120_1p003"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966094.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0008168 - methyltransferase activity [Evidence IEA];
                     GO:1904047 - S-adenosyl-L-methionine binding [Evidence
                     IEA]"
                     /GO_process="GO:0006306 - DNA methylation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="WP_080069401.1"
                     /translation="MQTELIKELNKVLKAFPQFWNGEELQRSMVSDAISQKQPDLIKAL
                     VDNEKVRSVYGADIDGIFIFDFDKLCGLLKYKEYWANSFTKYRNKVGLTSEGKYLDYSS
                     DVVLDFPFKDCVLEGGMSKEDQGKSEVYYNEIIARDEIDNLFSPKVLKEVNRYSKEGVK
                     KERIFNRNDNLIIRGNNLIALHCIKNIYEKSVKLIYIDPPYNTDTDSFKYNDKFSHSTW
                     LTFMKNRLEVAKDLLCDDGLIAISIDDNELNYLASLADDIFGRKNRIAIFPRITKKGGK
                     SASIFAKNHDYILLYVRSLENKRMYAVSHDDDNFKYKDEYFAERGSYKLNQTLDYDSLQ
                     YSKSLDYIIEINGEKYYPGGDENLFNDRMNGKHNRADWAWRWSRKLFDFGFENGFIEIR
                     NGGQRPRIYTKTYQNAKISKDGNDYVITYFDRTKPLSTLEFTENKYSNDNATKHISSLL
                     GKNIFDYTKPETLLAKLIEITSTKNDLILDFNLGSGTTAAVAHKMGRRYIGIEQMEYIN
                     DITVPRLKKVIEGEQGGISKDVNWQGGGSFVYAELMELNAYFVHEIQKAQSTEELEKLF
                     TMMKTEAHLNYQVELENVLSAEYEVDGIFRKVAFSELELHEQKQLLIEILDKNKLYVNV
                     SDMEDSELSISESDKAFTRSFYGME"
                     /name="site-specific DNA-methyltransferase"
     Typing          complement(287..367)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.73e-35"
     Typing          complement(6731..6828)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="97.0"
                     /coverage="100.0"
                     /evalue="2.25e-39"
     Typing          387..934
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.128"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtgaacaaac agcaacaaac tgcgctgaat atggcgcgat ttatcaaaag ccagacgcta
       61 accctgctag aaaaactcaa cgagctggac gcggacgaac aggcggacat ctgcgaatca
      121 cttcacgacc acgccgacga actctaccgc agttgcctcg ctcgcttcag tgatgatggt
      181 gaaaacctct gacacataca gctcccggag acggccacag cttgcctgtg agcggatgcc
      241 gggagcagac aagcccgtca gggcgcgtca ggccgtggac cttgcgggtg tcggggcgca
      301 gccatgaccc agtcacgtag cgatagcgga gtgtatactg gcttaactgt gcggaatcag
      361 tgcgattgta agaaaacagc ggcatatgcg gtgtgaaata tcgcatagat gcgtaaggag
      421 aacatgcctg ttcaggcact cttccgcttc ctcgctcact gactcgctac gctcggccgt
      481 tcggctgcgg cgagcggtat cagcccactc aaaaacggta atgcggtgat ccacagaatc
      541 aggggataaa gccaaaagga gcatgtgagc aaaaaacaag aaccaggaaa aggccgcgcc
      601 gatggcgttt ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag
      661 tcagaggtgg cgaaacccga caggacttaa agataccagg agtttccccc tggtggctcc
      721 ctcgtgcgct ctcctgttcc gaccctgccg attaccggat acctgtccgc ctttctccct
      781 tcgggaagcg tggcgctttc tcatagctca cgctgttggt atctcagttc ggtgtaggtc
      841 gttcgctcca agctgggctg tgtgcacgaa ccccccgttc agcccgaccg ctgcgcctta
      901 tccggtaact atcgtcttga gtccaacccg gtaagacacg acttattgcc actggcagca
      961 gccactggta actgatttag aggagtttgt cttgaagtta tgcacctgtt aaggctaaac
     1021 tgaaagaaca gattttggtg actgcgctcc tccaagccag ttacccggtt agataatctg
     1081 ccaggattag ctaaccttcg aaaaaccacc tgccagggtg gttttttcgt ttacaggcag
     1141 cagattacgc gcagaaaaaa aggatcacaa gaggatcctt gaatcttttc cccctcatcc
     1201 ccctaggcat aaacatagcg aacggttttt aaccacaatt caaaactaat gattcgcaac
     1261 agcaagaaca aacaatgcaa ccattacagg agcaatcatc aactcccggg gaggtggtta
     1321 gggataacaa taaaataacg gagcgtaatg ctccgttatt tattgtcgtg atttacagtg
     1381 gtagggaaag cgaggaggtt tcgagcgatt ctccatcatt cagcttgttc tgcatgtcgc
     1441 tgacaaaaac gtccatctgg ctgttggcaa agaatttaat cccaaccagt ctgacgtgct
     1501 cattttcatc aattacaatg cgctccctat cattcagggt ttcgagcatc cgttctttcc
     1561 atgcgtcatc cagcaaacga tcatccccct tcggttcaag gaacacctgc cagtaagtgt
     1621 tgtccgaatg gcgcgtcagt atcatgatga aatctggcat aaacccgcgc acgccgccga
     1681 actccgtgag cttaaagcgc gttgactgct cgtcgttacg cagtacgtaa atatcgtcat
     1741 aacgcgcttt tagcttcggc atgaatgctt ccagcgtttt aattaggcga tgctcaagct
     1801 gattcagtat cgcattatcg tacacgtacc attttttacc aatggtgggt acagcagtga
     1861 ttttctgatt aataactacc gacgggtcaa tgtgcaaact gtaatcttta ataacctctt
     1921 tcaccggctg gctgataaag cggtacgtgc cttttacctt ctgatcattg cggcgaacgt
     1981 tctctgagat acgcagcaga acggtttcca gtaggtgcag cttatctttt gccggtacgg
     2041 tggtgaaatc cagtgactgc ggtacgatga ctgtaatttt cagcttacca agataggcgt
     2101 cactgcggat gaactcacgg atgcctgtca gtttcgggaa gaaacgctgc aggttatcaa
     2161 gtgcgtaaaa gctgatcctt tgcatcgcct tgcggtaaaa acgctcgtcc agtaccagta
     2221 gttccggttt tgtgattcca gtctttgtgc ctgtcaggtt gtccagcgac tcctcgcaga
     2281 cggtctgata cggtatctca aagcgtgttt ccagcgagta ggtttcccag tttctgctgc
     2341 tgctctcaat ctcctccact tcgttgaagt acagcttacc cgcctgatac acggcggact
     2401 ttttaaaatc ttctttcagt ctggcgtgtt caatcgtacc gccgccatcc tgatgcacat
     2461 caatgtccgc ctgctccaaa gaggcatgca gtgttttgat gtacgccggt tcattgatgg
     2521 tgtgatagtg cagttgctcc agtacgctca aatccttcgt actgttatca aaacggcggg
     2581 tgaagcttcg ttgaccgtca taaatgaacg ggtagtaacg cgcgcctcgc ccgataagct
     2641 gcgcttcgct gtccgtgctg gttttgctgc tgctcgcctg ctcgctgatg cggacaatat
     2701 cgtagaggtt gagaacgtcc cagccttcat tcaccttcgc gacggcaaag acggctctca
     2761 ccggattatc gacttcttct agtgtattca gcaggacggg attctcttcc agcagatctg
     2821 acttgttgac gttcagcagg ttaaagtcgt taaagtcctc ctgaatttgc ccagtcaccg
     2881 tcactaaatc actgttagcg taacgctgaa tcactttatg ccagatactg gtgtcagagc
     2941 tgagctggag ttttttgtta gctagatgac gtctgacgct ctcaggtgtc atggcggcta
     3001 tcagttgcga aaactcctcc tgcttcgcct ttgatatcgc aatcttattc gacttgaaca
     3061 gaatgaccgg tttgaagccg gtgatgccgt gatctgctgc cgtcagttta cggtactggc
     3121 ttaaaagtac cgcatcaagc atcttgtcgc tgtcattctg gttggcttcc agcagcatga
     3181 ctttcttcga gtaaccgtct gacatgaact gtttcaggtc atactgatac accaccttac
     3241 cacggtattt ctgcccgata tctttgttcg caagatcaat ggtggcggtg aactcgaaca
     3301 ggcggttatc cggtcgcagg ttgaggatgt tctcaatcgt gcgttcccag gtctgctcct
     3361 cgttctccgg tgaggttttc gacttgcctc tagctttagt accggcgttg aaatgatgtg
     3421 cctcgtcacc aagcagcaca agggggattt cttttaaatc ctcgtaggtg atgctgttct
     3481 cacgatagct gttcagctcg tcgtgcatct tatggatagt agagagcttg aggtaaatcg
     3541 tgttacgttc cggtatggac gggaatgttt ctatcggttc gatggtgatt ttttccccgt
     3601 cgatttccag ctcctgactg aacaggtact tcggcgattg cggattaagc aagttctctc
     3661 gcgttttctg gataatcgcg tctgtatgca cgaagaaaat gaagttctga taccctaact
     3721 ctttaaacag ataaagtatc gttcctgcca tcaccatcgt tttccctgca ccggttgcca
     3781 tgtgaaacag caggtggcga taatgcagca gcgcatcatc ccgtttacgt tgcgtgtaat
     3841 gcaggtaacg cagtgcacca tgctgatagg ggcgcagggc atctttcagg ttttcctgaa
     3901 tatagtccgg cgtctgatag ttatcgtgga acagtcctgg ttcatcgaac tgcttcagcc
     3961 tgttaaacag tagcttctca ctgccgactg acttcggttt cttcgccatg ccgtcactcc
     4021 attccgtaga agctgcgggt aaaggcttta tcgctctccg aaatgctcag ttcgctgtcc
     4081 tccatatcag agacattcac gtagagttta tttttatcga ggatttcaat cagaagctgc
     4141 ttctgctcat gcagttccag ttcactgaaa gctaccttac ggaagatgcc atccacttcg
     4201 tactcagcgg acagcacatt ttccagctct acctgatagt tgagatgggc ctctgttttc
     4261 atcatggtaa agagtttttc gagttcttcc gtggactgcg ctttctgaat ttcatgcacg
     4321 aaataggcgt tcagctccat caattctgcg tagacaaagc tgcctccccc ctgccagtta
     4381 acgtcttttg agatcccccc ctgttcacct tcgatgactt ttttcaggcg aggtaccgta
     4441 atgtcgttga tgtactccat ctgctcaata ccgatatagc gacgccccat tttgtgagca
     4501 acagcagctg tagttccact accaagatta aagtctagaa ttaggtcatt tttagtagat
     4561 gttatttcga ttagcttagc caatagggtt tctggttttg tataatcaaa tatatttttc
     4621 cctaagaggg agctaatgtg ttttgtcgca ttgtcgttag aatacttgtt ttcagtaaac
     4681 tcaagtgttg acaatggctt tgttctatca aagtaggtta tgacataatc atttccgtcc
     4741 tttgatatct ttgcattttg atatgttttt gtatatatcc ttggcctttg gccgccattt
     4801 cttatttcaa taaacccatt ttcaaaccca aaatcgaata atttcctact ccatctccaa
     4861 gcccagtccg ccctgttatg cttgccattc attctatcat taaataaatt ttcatcacca
     4921 cctgggtaat atttctcacc attgatttct attatataat caagtgattt gctgtattga
     4981 aggctatcat aatccaaggt ttggttgagt ttgtagcttc ctctctcagc aaagtactca
     5041 tctttatatt tgaaattatc gtcgtcgtgc gaaactgcat acatacgctt gttttctaaa
     5101 cttctaacat aaagcagtat gtaatcatga ttctttgcga aaatgctggc ggatttccct
     5161 cctttctttg ttattcttgg gaatatagca atcctatttt ttcggccaaa aatatcatca
     5221 gccaacgagg ccaaataatt taattcatta tcatcaatac taattgcaat taacccgtca
     5281 tcgcacaaca aatcttttgc aacttcaagt ctgttcttca tgaaagtcag ccacgtagag
     5341 tgactaaatt tatcattata tttaaagcta tctgtatcag tattatatgg tggatctata
     5401 taaattaatt taactgactt ctcgtatata ttttttatac agtgcaacgc aattaggtta
     5461 tttcctctga taattaaatt atcattacgg ttaaatattc tttctttttt tactccttct
     5521 ttagagtaac gatttacttc tttgagaact ttcggtgaga acaaattatc tatttcatct
     5581 cgtgcgatga tttcattata gtaaacctct gattttcctt gatcttcttt cgacataccg
     5641 ccttcaagaa cacaatcctt gaaaggaaaa tccagcacca catcagaact gtaatcaagg
     5701 tatttacctt cgctagttaa tcccactttg ttccggtatt tagtgaagct attagcccaa
     5761 tattctttgt attttagaag accacataat ttgtcaaagt caaagataaa aatgccatca
     5821 atatccgcac cataaacaga gcggactttt tcattatcga ccaatgcctt gataaggtct
     5881 ggctgctttt gactgatagc gtcactcacc attgaacgtt gtaattcctc tccgttccag
     5941 aattgcggga atgcttttaa aaccttgtta agttctttta ttaattcggt ctgcatgtca
     6001 tggccttatg actgttaaat attggaatga ttgtaaggta tagcgttcgg tgctggaacc
     6061 cgacagctat gagttggatg cagttgcggg gaaatgcatc agaatgggtg gtatttaaca
     6121 taaacgctct tgcgcgcacc actaaaacgc gctgaacgcg attctgacgc aaacaccgca
     6181 aaaagagatg ttttaccagt gaaaaccaga aaaatgcgtc aggatcgttt tcagctcgat
     6241 gcatagctat gcatgaaagt gaatgacgat cggtttgagt gcattcggtg ccaataaggc
     6301 acattttcag acattttcag ttcgtgaatt ccaggcatat ctgagcagac acccctaggg
     6361 gcgctgctag gggtgtcctg taaaaaaatg cgacgcgtcc ctagggacgc ccatacctta
     6421 attaactgtt ttttataaag attgtcagta ctgaccctaa gtagggtcgc catagcgtcg
     6481 ccatagggtc gtcaacgacg tgcttttgca taaatctgaa aaagaaaata catttttgaa
     6541 accataacaa catgatttca aaagcaaatc agcaaaaaat tagttttgcg tggggtgtgg
     6601 gcatttcagg catgagaaca gactcgcgtt tttccggggt atctgcggaa tttttgataa
     6661 aaaaaacctc gacgcagagc gaaattttat gcaacagcgg ctgtacagca cagggattat
     6721 ttatcagttg atatgctgtg ccatgatacc tcctaaaaaa caggacagga tgtgcaattg
     6781 taataccgtc gcgcgcaacg tcttacaatt accacctggt cagggtccac ccgacacccg
     6841 gtactgacgg agaacaaccg aag
//
