LOCUS       NZ_CP021784             2343 bp    DNA     circular CON 25-FEB-2024
DEFINITION  Acinetobacter baumannii strain A85 plasmid pA85-1a, complete
            sequence.
ACCESSION   NZ_CP021784
VERSION     NZ_CP021784.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN07125723
            Assembly: GCF_002210065.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Hamidian,M., Hawkey,J., Wick,R., Holt,K.E. and Hall,R.M.
  TITLE     Evolution of a clade of Acinetobacter baumannii global clone 1,
            lineage 1 via acquisition of carbapenem- and
            aminoglycoside-resistance genes and dispersion of ISAba1
  JOURNAL   Microb Genom 5 (1) (2019)
   PUBMED   30648939
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Hamidian,M., Wick,R.R., Hawkey,J., Holt,K.E. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-JUN-2017) School of Life and Environmental Sciences,
            The University of Sydney, Cnr., Maze Cres., and Bultin Ave, Sydney,
            NSW 2006, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 27-JAN-2017
            Assembly Method                   :: Unicycler v. JAN-2017
            Assembly Name                     :: Acinetobacter A85
            Expected Final Version            :: yes
            Genome Coverage                   :: 369.0x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/25/2024 08:03:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,032
            CDSs (total)                      :: 3,936
            Genes (coding)                    :: 3,873
            CDSs (with protein)               :: 3,873
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 63
            CDSs (without protein)            :: 63
            Pseudo Genes (ambiguous residues) :: 0 of 63
            Pseudo Genes (frameshifted)       :: 28 of 63
            Pseudo Genes (incomplete)         :: 35 of 63
            Pseudo Genes (internal stop)      :: 14 of 63
            Pseudo Genes (multiple problems)  :: 12 of 63
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP021784.1.
            Bacteria and source DNA available from Ruth Hall, University of
            Sydney.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="A85"
                     /isolation_source="sputum"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="pA85-1a"
                     /geo_loc_name="Australia:Sydney"
                     /lat_lon="33.8650 S 151.2094 E"
                     /collection_date="2003"
                     /collected_by="Ian Carter"
                     /genotype="global clone 1"
     gene            7..1191
                     /locus_tag="CBI29_RS19700"
                     /old_locus_tag="CBI29_04001"
     CDS             7..1191
                     /locus_tag="CBI29_RS19700"
                     /old_locus_tag="CBI29_04001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003115284.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_032071712.1"
                     /translation="MNIFYGENPSSASSKSLENSQSLGIKTKSHVMLTPQGFQRVHDYL
                     LQDQSRKLLPKERVSKCRRLRIDKTKTRTVMYNEHREKAHYGNVQICGSIWSCPVCAKQ
                     ITQKRRNELGKGIESWKTAHNGSVYLLTLTFSHSPDQSLKSNLEGLKRAMKRFYETTRV
                     QAIFKKLSVFHKIKGLEVTYGQNGWHPHHHVLLLAEHHDLRFKDYTSELTELWIKACIK
                     SGLNAPSMRHGLDLRNGSYADQYVSKWGLEDELSKGHVKKGRNGGFTPFDLLNFSIEDN
                     EIYGKKPSKLFQEFAISMKGARQLVWSRGLKKLLGIEEKSDEELAVETDKASITLNRVE
                     DLVFELLCRYQLRHQYLEAIKHDYETGSFGSGLADQLIEQVVNYEIKQMQQVFS"
                     /name="protein rep"
     gene            1257..1412
                     /locus_tag="CBI29_RS19705"
                     /old_locus_tag="CBI29_04002"
     CDS             1257..1412
                     /locus_tag="CBI29_RS19705"
                     /old_locus_tag="CBI29_04002"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_153603842.1"
                     /translation="MATEMRQKFNCDVIFNVVEAEDTTMRMDGDLTFDEMFEPQEIFSK
                     YMEPMH"
                     /name="hypothetical protein"
     Typing          2..1191
                     /name="rep_cluster_586"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgtcgatga atatatttta tggggaaaat ccgtcctcag caagctcaaa gagcctcgaa
       61 aatagccagt cccttggtat aaagacgaaa tctcatgtaa tgcttacgcc acaaggcttt
      121 cagcgtgtgc atgattatct attacaagac caatctagaa aacttcttcc taaagaacgt
      181 gtatctaaat gtagacgtct ccggatcgat aaaactaaga ctagaactgt tatgtataac
      241 gagcatcggg agaaggctca ttatggcaat gttcaaatct gcggttctat ttggtcatgt
      301 cctgtttgtg ccaagcaaat cacacagaaa agacgtaatg aattaggtaa gggcatagag
      361 tcgtggaaaa cggctcataa tggctctgta tatctcctta cgcttacttt tagccattca
      421 cctgaccaat ccctcaaaag taatttagag ggccttaaac gcgcaatgaa gcgtttttat
      481 gagacaactc gagttcaggc tatttttaaa aaactatctg tttttcacaa aataaaaggc
      541 ctagaagtta catacggtca gaatggttgg catccccatc atcatgtact tcttttagct
      601 gaacatcatg atttacgttt taaagattac acttctgaat taacggagtt atggattaaa
      661 gcctgtatta aatcaggatt aaatgctcca tcgatgcgcc acggtttaga tcttcgaaat
      721 ggctcttatg ctgaccaata tgtgtctaag tggggccttg aagatgaact ttcgaaaggg
      781 catgtgaaaa aaggtcgcaa tggtggtttt accccttttg atcttttaaa tttttctatt
      841 gaagataatg aaatttatgg aaaaaaacct tctaaacttt ttcaagaatt tgccatttct
      901 atgaagggtg ctcgccaact agtttggtct cgaggtctta aaaaactttt aggtattgaa
      961 gaaaaaagtg acgaggaact tgcagtagaa actgacaaag cttccattac tttgaatcgt
     1021 gttgaagatc tcgtttttga acttttatgt cgttatcaat tgcgtcatca atatcttgaa
     1081 gcaattaaac atgattatga gactggctct tttggttctg gattagcaga tcaacttatt
     1141 gagcaagtag tgaattatga aattaaacaa atgcagcagg tattttcgtg attgaagcaa
     1201 tttatatttc cataggtaag attcatcgaa atgtacctaa actaatttgg gataacatgg
     1261 ccacagaaat gcgtcaaaaa tttaattgtg acgtgatttt caatgttgtt gaagctgaag
     1321 atacgactat gcgtatggat ggtgatttaa cttttgatga aatgtttgaa cctcaagaaa
     1381 tatttagtaa gtacatggaa ccaatgcatt aattattaaa tcacttaatg gcgtttggcg
     1441 tgcgatgcac gcacataacg ccattaagtg agttcttatt agcctggaat attccaggct
     1501 tttttgcgtg tacgcaaaaa tcaaaaagaa ccaaattgac aacatgacaa caagacaatt
     1561 tgacaacatg aaaacatgac aacaacttag gctatctatg caccactggt gcatgaatat
     1621 ttgggcgcaa tatcagcgtg gcgggggtcg gtgggatgtg cggagcgcgt cctgccgacc
     1681 cccgcgatgc tgatatgaga gcagatattt attttcagcc tgaaaatgaa aaaacagagc
     1741 gggtgtctac ccgcgaactg acacaaaacg atttaaaacc ttccctctct gattacaagc
     1801 tccctttagc ctaagaacgg gagttaccga gctttgctcg caggatgctt ttgtttctcg
     1861 aatgagaaac gcgtaagcgt gcattcctga aaaaacaccc taatttgcta ggtggaaaac
     1921 acacaaagaa cctgtactaa aactagggag aataaatata agaaaggaga ttcacttatg
     1981 cttgattatg attttattaa tttgattctt ttcgttttat cgaccttgta cacaattttg
     2041 gggtattaca aaaaatgata ttccaatcta ttaaaaacaa ggcgggacaa ttacgaggag
     2101 tgaggaggag ggcacgcacg acgacacgac cgaggaattg gcagagcctt gtatttactg
     2161 cgtgtatctc tcgtatatac ggggtgttgt catgaaaact tgttgtcttg cttttaggaa
     2221 tttttcagta gtaatatcaa cttgcactaa agtcctgtgc gaaagaccta gtaaaccgta
     2281 caggcataaa aatgggctga cagtgctgga acacttcaac ccagtgatca acataattaa
     2341 ggt
//
