LOCUS       NZ_CP019997             4018 bp    DNA     circular CON 14-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Anatum str.
            USDA-ARS-USMARC-1765 plasmid pSAN2-06-0624, complete sequence.
ACCESSION   NZ_CP019997
VERSION     NZ_CP019997.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716855
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Anatum str.
            USDA-ARS-USMARC-1765
  ORGANISM  Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS...
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4018)
  AUTHORS   Nguyen,S.V., Harhay,D.M., Bono,J.L., Smith,T.P., Fields,P.I.,
            Dinsmore,B.A., Santovenia,M., Kelley,C.M., Wang,R., Bosilevac,J.M.
            and Harhay,G.P.
  TITLE     Complete and Closed Genome Sequences of 10 Salmonella enterica
            subsp. enterica Serovar Anatum Isolates from Human and Bovine
            Sources
  JOURNAL   Genome Announc 4 (3), e00447-16 (2016)
   PUBMED   27257192
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4018)
  AUTHORS   Nguyen,S.V., Harhay,D.M., Bono,J.L., Smith,T.P.L., Fields,P.I.,
            Dinsmore,B.A., Santovenia,M., Kelley,C.M., Wang,R., Bosilevac,J.M.
            and Harhay,G.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAR-2017) USDA-ARS-U.S. Meat Animal Research Center,
            State Spur 18D, Clay Center, NE 68933, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 3
            Genome Coverage                   :: 265.95
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_009949325.1-RS_2024_03_14
            Annotation Date                   :: 03/14/2024 02:44:33
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 7
            CDSs (total)                      :: 7
            Genes (coding)                    :: 6
            CDSs (with protein)               :: 6
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 1
            CDSs (without protein)            :: 1
            Pseudo Genes (ambiguous residues) :: 0 of 1
            Pseudo Genes (frameshifted)       :: 0 of 1
            Pseudo Genes (incomplete)         :: 1 of 1
            Pseudo Genes (internal stop)      :: 0 of 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019997.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4018
                     /organism="Salmonella enterica subsp. enterica serovar
                     Anatum str. USDA-ARS-USMARC-1765"
                     /mol_type="genomic DNA"
                     /strain="USDA-ARS-USMARC-1765"
                     /serovar="Anatum"
                     /isolation_source="stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:1454593"
                     /plasmid="pSAN2-06-0624"
                     /geo_loc_name="USA: BIFSCo Region 5"
                     /collection_date="2006-07"
                     /collected_by="CDC"
     gene            complement(126..239)
                     /locus_tag="AW58_RS00050"
                     /old_locus_tag="AW58_25915"
     CDS             complement(126..239)
                     /locus_tag="AW58_RS00050"
                     /old_locus_tag="AW58_25915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_072035093.1"
                     /translation="MHEPPVQSDRCALSGNYRLESNPERHDKTPLAAATGN"
                     /name="replication initiation protein"
     gene            887..1210
                     /locus_tag="AW58_RS00015"
                     /old_locus_tag="AW58_25925"
     CDS             887..1210
                     /locus_tag="AW58_RS00015"
                     /old_locus_tag="AW58_25925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024191642.1"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQICLDEKPSRAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGTGHDRVQVVAVLMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1419..>1853
                     /locus_tag="AW58_RS00045"
                     /pseudo=""
     CDS             1419..>1853
                     /locus_tag="AW58_RS00045"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1888..2373
                     /locus_tag="AW58_RS00025"
     CDS             1888..2373
                     /locus_tag="AW58_RS00025"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_061390563.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMISQTWLTIVLVSALLIASSAGILWWQGQQIL
                     DNYTTIQEQKSTQAMLSEKNNGVQLTTCGEERRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2377..2592
                     /locus_tag="AW58_RS00030"
     CDS             2377..2592
                     /locus_tag="AW58_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_072048928.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSQG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2763..3248
                     /locus_tag="AW58_RS00035"
                     /old_locus_tag="AW58_25935"
     CDS             2763..3248
                     /locus_tag="AW58_RS00035"
                     /old_locus_tag="AW58_25935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004883515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_208484249.1"
                     /translation="MSFTVAAAENNDNVTYTKPSAGRDLYLTCKGYQVKGASVINVEKP
                     SYLEGTGEQVEFAIITPVGASDGLKVFFDSWGFSSFGLIESHVMHEHWSLVHVGGRASV
                     KGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCMNSDKRPSWVEKIYTRTGVFRGGIED"
                     /name="hypothetical protein"
     gene            3503..3715
                     /locus_tag="AW58_RS00040"
                     /old_locus_tag="AW58_25940"
     CDS             3503..3715
                     /locus_tag="AW58_RS00040"
                     /old_locus_tag="AW58_25940"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_034169353.1"
                     /translation="MGDFERTFGAGADFDRIIDENNSEYFREDRRKTKNSKKKFSSFQD
                     ALVWAKANPGKTIIRSPDGVGFIEK"
                     /name="hypothetical protein"
     Typing          597..774
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.222"
                     /coverage="83.0"
                     /evalue="4.5e-50"
     Typing          complement(127..647)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="89.564"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          1201..2684
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.717"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcgaaggttc tcagagcagc aactctttga accgaggtaa ctggcttgga ggagcacagt
       61 caccaaaact tgtcctttca gtttagcctt aaccggcgca taacttcaag actaactcct
      121 ctaaatcagt taccagtggc tgctgccagt ggcgttttgt cgtgtctttc cgggttggac
      181 tcaagtcgat agttaccgga taaggcgcag cggtcggact gaacgggggg ttcgtgcata
      241 cagtccagct tggagcgaac tgcctacccg gaactgagtg tcaggcgtgg aattagataa
      301 acgcggccat aacagcggaa tgacaccggt aaaccgaaag gcaggaacag gagagcgcac
      361 gagggagcta ccagggggaa acgcctggga tctttatagt cctgtcgggt ttcgccacca
      421 ctgatttgag cgtcagattt cgtgatgctt gtcagggggg cggagcctat ggaaaaacgg
      481 caacgccgca tcctttttcc gccctttctg attgatttcc gcttagtctc tttatccagc
      541 cattcgtaag ctggcaacgc ccgccgcagt ctcacggcag gagcgcagcg accgagtgag
      601 cgaggaggcg tcatttcacc gggatctgca tttcgcactt acgccccaca gcagcatttt
      661 ctccctgcca catgaagcac tttcctgaat ccccactccg atttaccatg ttaagccagt
      721 atacactccg ctagcgctac gtgactggtt cagggctgcg ccccgaaacc cgctgaaaag
      781 tactgccgcg ccctgcgggc ttgcccaaca ccgctccgga caggaaaaaa tttcccgccc
      841 gaaccggtgt tatccggagg atggtttggc agaaaagcgc aacaaaatgc tcactatgtg
      901 ggtgacagaa gacgagcacc gccgacttct ggagcgctgt gagggtaaac aactcgcggc
      961 ctggatgcgc cagatatgcc tggacgaaaa gccctcgcgt gctggcaaac ttccatccat
     1021 ctcgccggcg ctgcttcgtc agcttgccgg catgggtaac aacctcaacc agattgcccg
     1081 gcaggttaac gccggtggcg gtactgggca cgatcgcgtg caggttgtcg ccgtgctgat
     1141 ggccattgat gccggactcg agcggctgcg gcacgccgtg ctggaaaagg gggcagacga
     1201 tgatcgttaa gtttcatccc agaggccgcg gcggtggcgg cggtccggtg gattatctgc
     1261 tggggaaaga ccggcagcgc gacggcgcca gcgttctgca gggtaagccg gaggaagtgc
     1321 gggagcttat tgacgcctcg ccttacgcca agaaatacac ctccggcgtg ctgtcttttg
     1381 ccgaacagga tttgccgccc ggccagcgtg aaaagctgat ggcgagcttt gagcgggttc
     1441 tgatgcccgg actcgataaa gaccagtaca gcgtactgtg ggttgagcac cgggacaaag
     1501 ggcggctgga gctgaacttc ctgatcccga acacggagct gctgaccggc agacgtctcc
     1561 agccgtatta cgaccgcgcc gaccgtccgc gcattgatgc ctggcagacc atagtgaacg
     1621 gcagactggg gctgcacgac ccgaacgcgc cggaaaaccg gcgggcgctg gttacaccgt
     1681 ccgcgctgcc ggaagcgaag caggaagccg cccaggcgat tacgcgcggc ctactttccc
     1741 ttgcctcatc cggggagctg aaaacccgtc aggacgtcac tgaggcgctg gaaagtgcgg
     1801 gttttgaggt ggtgcgcacc acgaaaagca gcatcagcat tgccgaccct gacggggggc
     1861 gaaacatccg actgaaggga gccatctatg aacagtcttt taacgctggc gaaggactta
     1921 gagcagaaat cgaaagcgca gcagcagact accggcgaga tgctgaaagc cgcattcagc
     1981 gagcacgaga agtctgtcag agcggaactg agcgaaagcg agaagagaat cagcgccgcc
     2041 atcctcgacc acgaccggaa gctgtcctca gccatgagcc aacgcacgaa agggatgctg
     2101 cgtatgatca gccagacgtg gctgaccata gtcctggtct ccgcgctact gatcgcctcg
     2161 agcgcgggca ttctgtggtg gcaggggcaa cagatactcg acaactacac gaccatccag
     2221 gaacagaaga gcacgcaggc catgctttca gagaagaaca acggcgtcca gctcacgacc
     2281 tgcggggagg agagacgccg ctgcgtgagg gtgaacccgg aagcgggaag attcggagag
     2341 gattcgagct ggatgatact ggcggggaaa tagcacatga cggaactgga aaaacagttg
     2401 ctgagcgcat tagagcagct acagcaggac tactcgaaaa ggctggacga gtgggagaac
     2461 gccttcgcgg aatggcggac gatgtctggg cttatgcaac gggagaacgc ggcgctgagc
     2521 gagcgcgtca cgggcttgag caggcaggtg cagagtttga gcgatcagct gcgccgattg
     2581 tcgcaaggct gaatggcatc gaggcgcacc gggagcagga gcgcgcggcg cagcaccaga
     2641 aagcgctgga gctggaacga tcgcagcggc agaaaggttt tgagcttgga atgtagttaa
     2701 tcaatgaaaa gggatgcgtt atgaaatgtt tctgggcttg ctcagtctcg gtggttttgg
     2761 ctatgtcatt tacagtcgct gctgcggaga ataacgacaa cgttacatat acaaaaccgt
     2821 cagccgggag ggacttatat cttacctgta aaggttatca ggtgaagggg gcatctgtaa
     2881 ttaacgtcga gaaaccttct taccttgaag gtactggtga gcaggttgaa tttgcaatca
     2941 ttactcctgt tggtgcgtct gacggactca aggtcttttt tgattcatgg ggtttttctt
     3001 catttggatt gattgaaagc catgtgatgc atgagcactg gtctttagtt catgttgggg
     3061 ggcgtgcttc agtcaaaggt gaaaagattg attattcatt tgtagataac cagccacagg
     3121 agggggggag ctataaaccc aaaacaggtg tgttcctgta cggctgcatg aactcggata
     3181 aaagaccatc ttgggtcgaa aagatctaca caagaacagg tgtgtttcga gggggcatag
     3241 aagactaaaa tactgcttac agcatgaaaa tccattgaac agagtgtcag ttcatttccg
     3301 tgcataacta tgcataccgt aagaacttac ggggggcatt tatcggcgtt tttacgtggt
     3361 aagaggtgct cttttgcggt tcatggcgca gaacggtgct gaggctgtct gcggcggtgc
     3421 gaacaaggga tgttatggta aataagagtg tcttttggat attttaaatc tgttttttta
     3481 ttaaatttaa tgggggcaga aaatggggga ttttgagcgt acctttggag ctggtgctga
     3541 ttttgatcgg ataattgatg agaataacag cgaatatttt cgagaagatc gccgaaaaac
     3601 taaaaattca aaaaaaaaat tctcttcttt tcaagatgct ttggtttggg cgaaagctaa
     3661 tcctggcaaa acgataataa gatctccaga cggtgtgggg tttattgaaa aatgaaagag
     3721 tggattcact gtaaaacaac agtcattttt tggacaacac tgtctatata cgtactcata
     3781 tgtttcacag tgtcgtatgt tggagtctat gttacgtacg ttgcagggcc tattttgtta
     3841 gttacaggca ttcttgcatg gcttacgaaa cctagctgta atccaaagtg actgggctag
     3901 acgaacttta tccccccata aaacccgctt ttttaaacgg atcttcttga gatcattcat
     3961 ggagaatcgt aatctcttag cactgtaaac gaaaaaaccg ccttgctggg cggttttt
//
