LOCUS       NZ_CP019897             3126 bp    DNA     circular CON 22-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Anatum str.
            USDA-ARS-USMARC-1677 isolate SAN222 plasmid pSAN2-1677, complete
            sequence.
ACCESSION   NZ_CP019897
VERSION     NZ_CP019897.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716849
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Anatum str.
            USDA-ARS-USMARC-1677
  ORGANISM  Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS...
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Nguyen,S.V., Harhay,D.M., Bono,J.L., Smith,T.P.L., Fields,P.I.,
            Dinsmore,B.A., Santovenia,M., Kelley,C.M., Wang,R., Bosilevac,J.M.
            and Harhay,G.P.
  TITLE     Comparative Genomic Analysis of Salmonella Anatum and Typhimurium
            Isolated from Humans and Cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3126)
  AUTHORS   Nguyen,S.V., Harhay,D.M., Bono,J.L., Smith,T.P.L., Fields,P.I.,
            Dinsmore,B.A., Santovenia,M., Kelley,C.M., Wang,R., Bosilevac,J.M.
            and Harhay,G.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2017) USDA-ARS-U.S. Meat Animal Research Center,
            State Spur 18D, Clay Center, NE 68933, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: HGAP v. 3
            Genome Coverage              :: 113.5
            Sequencing Technology        :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_009949295.1-RS_2024_05_22
            Annotation Date              :: 05/22/2024 01:47:09
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 6
            CDSs (total)                 :: 6
            Genes (coding)               :: 6
            CDSs (with protein)          :: 6
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019897.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Salmonella enterica subsp. enterica serovar
                     Anatum str. USDA-ARS-USMARC-1677"
                     /mol_type="genomic DNA"
                     /strain="USDA-ARS-USMARC-1677"
                     /serovar="Anatum"
                     /isolate="SAN222"
                     /isolation_source="ground beef"
                     /host="Bovine"
                     /sub_species="enterica"
                     /db_xref="taxon:1454588"
                     /plasmid="pSAN2-1677"
                     /geo_loc_name="USA: BIFSCo Region 6"
                     /collection_date="2005-07"
                     /collected_by="USMARC"
     gene            1..324
                     /gene="mobA"
                     /locus_tag="AW53_RS00005"
                     /old_locus_tag="AW53_25070"
     CDS             1..324
                     /gene="mobA"
                     /locus_tag="AW53_RS00005"
                     /old_locus_tag="AW53_25070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_176703055.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITVYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            783..1535
                     /locus_tag="AW53_RS00010"
                     /old_locus_tag="AW53_25080"
     CDS             783..1535
                     /locus_tag="AW53_RS00010"
                     /old_locus_tag="AW53_25080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001127762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016249639.1"
                     /translation="MDTTSLISSISVPRLSFYETFLGCATDQEKVGAYVAYQDLSGDFF
                     CLVQMIEVALRNAINNTIKANHGPAWYDSIPQTKKSQDLVLNAKQKALDECGVRYTDDD
                     VICRLTFGFWVYMLDAPYRDTQRPCYIWTPENKAKTFPHAKNPLGGGDMKVKALFDEFH
                     KVLLFRNRLFHHEPIWKKHHCKSHSQAINNMLKEFNFLMNALSIVSNEKKELIEFIGHD
                     RRFYERCTIEYVMGIIGRIKCRELKVAG"
                     /name="hypothetical protein"
     gene            complement(1560..1709)
                     /locus_tag="AW53_RS00015"
     CDS             complement(1560..1709)
                     /locus_tag="AW53_RS00015"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_176703056.1"
                     /translation="MKMNTKVLFVKKALKSITCATLSLLPALSRAVTELRSLSAARLKA
                     GKSF"
                     /name="hypothetical protein"
     gene            complement(2065..2178)
                     /locus_tag="AW53_RS00030"
     CDS             complement(2065..2178)
                     /locus_tag="AW53_RS00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071790583.1"
                     /translation="MHEPPVQSDYCALSGNYRLESNPERHDLSPLAAATGN"
                     /name="replication initiation protein"
     gene            2364..2519
                     /locus_tag="AW53_RS00020"
     CDS             2364..2519
                     /locus_tag="AW53_RS00020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016570191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001318241.1"
                     /translation="MSVDFCDARQGGGAYGKTPAVLASSGALLFAHMFFPALSPDSVDN
                     RITAFE"
                     /name="hypothetical protein"
     gene            complement(2647..2841)
                     /locus_tag="AW53_RS00025"
                     /old_locus_tag="AW53_25090"
     CDS             complement(2647..2841)
                     /locus_tag="AW53_RS00025"
                     /old_locus_tag="AW53_25090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041643.1"
                     /translation="MNKQQQTVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEVENSTEI"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2877..3118
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.9300000000000005e-124"
     Typing          complement(2107..2618)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="85.821"
                     /coverage="97.0"
                     /evalue="1.7899999999999998e-152"
     Typing          2..321
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.09e-63"
ORIGIN
        1 atgacaaaac gaagtggaag taatacgcgc aggcgggcta tcagtcgccc tgttcgtctg
       61 acggcagaag aagaccagga aatcagaaaa agggctgctg aatgcggcaa gaccgtttcc
      121 ggttttttac gggcggcagc tctcggtaag aaagttaact cactgactga tgatcgggta
      181 ctgaaagaag ttatgagact gggggcgtta cagaaaaaac tctttatcga cggcaagcgt
      241 gtcggggaca gggagtatgc ggaggtgctg atcgctatta cggtgtatca ccgtgccctg
      301 ttatccaggc ttatggcaga ttagcttccc ggagagaaac tgtcgaaaac agacggtatg
      361 aacgccgtaa gcccccaaac cgatcgccat tcacttttat gcatagctat gcagtgagct
      421 gaaaacgatc ctgacgcatt tttccagttt tcactgggta aaacatctct ttttgcggtg
      481 tttgcggctg aatcgcgttc agcgcgtttt agcggtgcgc gtaaggggag ttatggtaaa
      541 ttggcagcaa agtattttct gatgttatgg attgtgaaga gtattcaatc cttattatga
      601 aacaataact ataactggtt gtttcatata gataaatata acaaaaaagc ccactctgta
      661 gtgggctttt ttgttatatt ttacgctcta gaggtacaca gaaaaacggt agttcgcctg
      721 ctcctcgaat gttgtaatgg tagtctgaaa aatattcata gtaaagagat aagtgagttt
      781 tcatggatac aacaagttta attagctcaa tttctgtacc aagattatct ttctatgaaa
      841 catttcttgg gtgcgctact gatcaagaaa aggttggggc atacgttgcc taccaagatc
      901 tgtctggcga ttttttttgt cttgtccaga tgattgaggt tgctctgcgt aatgcgataa
      961 acaatacaat caaagctaat catgggcctg cttggtacga ctctatacct caaacaaaga
     1021 aatctcagga tcttgtttta aatgcgaaac aaaaagcact agatgagtgt ggcgtaaggt
     1081 atacggatga tgatgttatt tgccgtctaa cctttggctt ttgggtttat atgttagatg
     1141 ccccatatag ggatacgcaa aggccgtgct acatctggac tccagagaac aaggcaaaaa
     1201 catttcctca tgcgaagaat cctttgggtg ggggggatat gaaggttaaa gcgctgtttg
     1261 acgagtttca taaagttctt ttgtttagga atcgactttt tcaccatgag cctatttgga
     1321 aaaaacacca ctgcaagtcg catagtcaag ccataaataa tatgttgaaa gagttcaatt
     1381 ttttaatgaa tgccttgagt atcgtctcta acgagaaaaa ggaacttatt gagtttattg
     1441 ggcacgatag gcgcttttat gaacgctgca cgatagagta tgttatgggg attataggga
     1501 ggattaagtg cagggagctt aaggtagccg gttgactttt aaggaaaaat gtgatacaat
     1561 caaaagctct taccggcttt aagtcgcgca gccgaaaggc tacgtaactc tgttactgcg
     1621 cgacttaaag ccggtaagag cgaaagagtt gcacaagtaa ttgatttcaa agcttttttc
     1681 acaaaaagaa ctttagtatt cattttcata atcctctatt tcttatgccg ttctaatggc
     1741 agcgttgact ttttattcca tctatttgaa tggttaatta taccatatct aacatcaaat
     1801 cttaaggata aatagctgat tcacatcagt ttttccatta attcacgaag ttttataatt
     1861 taattacgga tttccttgag ttcatatcgc gcccatcgta atcttaaaaa cgaaaaaacc
     1921 acccggcaag gtggtttttc gaaggttcag caaccggcaa gtttctgaac cgcggtaact
     1981 ggcttaagag gagcgcagtc accaaaactt gttattccag tttagcctta actggcacgt
     2041 aacttcaaga ctaactcctc taaatcagtt accagtggct gctgccaatg gcgataagtc
     2101 gtgcctttcc gggttggact caagacgata gttaccggat aaggcgcagt agtcggactg
     2161 aacggggggt tcgtgcatac agtccagctt ggagcgaact gcctacccgg aactgagtgt
     2221 caggcgtgga atgagacaaa cgcggccata acagcggaat gacaccggta aaccgaaagg
     2281 caggaacagg agagcgcacg agggagccac cagggggaaa cgcctggtat ctttaagtcc
     2341 tgtcgggttt cgccacctct gacttgagcg tcgatttttg tgatgctcgt caggggggcg
     2401 gagcctatgg aaaaacgcct gcggtgctgg cttcttccgg tgctttgctt tttgctcaca
     2461 tgttctttcc ggctttatcc cctgattctg tggataaccg tattaccgcc tttgagtgag
     2521 ctgacaccgc tcgccgcagt cgaacgaccg agcgtagcga gtcagtgagc gaggaagcgg
     2581 aagagcgcct tatgtgacat tttctcctta cgctctgttg tgccgttcgg catcctgccc
     2641 tgagcgttat atctctgtgc tattttctac ttcaaagcgt gtctgtatgc tgttctggag
     2701 ttcttccgcg agttcgtgca gcttctcaca catggcggcc tgttcgtcgg catcgagtgc
     2761 gtccagcttt tcgagcagtg tcaggctctg gctttttatg aagcccgcca tgttgagtac
     2821 agtttgctgc tgcttgttca tctttctgtt ttctccgttc tgtctgtcat ctgcgttatg
     2881 tgattatatc gcgtaccact tttcgacagt tttgccgccg gtattctgcc gtctgactct
     2941 ttgacgggca tttctgcctg acaatactgt cactgccaaa aaaactgccg tgcctttgtc
     3001 ggtaattcga acttgctgac aggacaggat gtgtaattgt tataccgcgc atacatgcac
     3061 gctattacaa ttaccctggt cagggcttcg ccccgacacc ccatgtcaga tacggagcca
     3121 tgtttt
//
