LOCUS       NZ_CP019896             3904 bp    DNA     circular CON 22-MAY-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Anatum str.
            USDA-ARS-USMARC-1677 isolate SAN222 plasmid pSAN1-1677, complete
            sequence.
ACCESSION   NZ_CP019896
VERSION     NZ_CP019896.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02716849
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Anatum str.
            USDA-ARS-USMARC-1677
  ORGANISM  Salmonella enterica subsp. enterica serovar Anatum str. USDA-ARS...
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3904)
  AUTHORS   Nguyen,S.V., Harhay,D.M., Bono,J.L., Smith,T.P.L., Fields,P.I.,
            Dinsmore,B.A., Santovenia,M., Kelley,C.M., Wang,R., Bosilevac,J.M.
            and Harhay,G.P.
  TITLE     Comparative Genomic Analysis of Salmonella Anatum and Typhimurium
            Isolated from Humans and Cattle
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3904)
  AUTHORS   Nguyen,S.V., Harhay,D.M., Bono,J.L., Smith,T.P.L., Fields,P.I.,
            Dinsmore,B.A., Santovenia,M., Kelley,C.M., Wang,R., Bosilevac,J.M.
            and Harhay,G.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-FEB-2017) USDA-ARS-U.S. Meat Animal Research Center,
            State Spur 18D, Clay Center, NE 68933, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method              :: HGAP v. 3
            Genome Coverage              :: 113.5
            Sequencing Technology        :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Name              :: GCF_009949285.1-RS_2024_05_22
            Annotation Date              :: 05/22/2024 01:48:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.7
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 3
            CDSs (total)                 :: 3
            Genes (coding)               :: 3
            CDSs (with protein)          :: 3
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019896.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3904
                     /organism="Salmonella enterica subsp. enterica serovar
                     Anatum str. USDA-ARS-USMARC-1677"
                     /mol_type="genomic DNA"
                     /strain="USDA-ARS-USMARC-1677"
                     /serovar="Anatum"
                     /isolate="SAN222"
                     /isolation_source="ground beef"
                     /host="Bovine"
                     /sub_species="enterica"
                     /db_xref="taxon:1454588"
                     /plasmid="pSAN1-1677"
                     /geo_loc_name="USA: BIFSCo Region 6"
                     /collection_date="2005-07"
                     /collected_by="USMARC"
     gene            1..1020
                     /locus_tag="AW53_RS00005"
                     /old_locus_tag="AW53_25055"
     CDS             1..1020
                     /locus_tag="AW53_RS00005"
                     /old_locus_tag="AW53_25055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_011017196.1"
                     /translation="MSAALQYFEENLPRRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREEAYTLDELADYLDLSASA
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPVPLSP
                     PECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKF"
                     /name="replication initiation protein"
     gene            complement(1281..1727)
                     /locus_tag="AW53_RS00010"
                     /old_locus_tag="AW53_25060"
     CDS             complement(1281..1727)
                     /locus_tag="AW53_RS00010"
                     /old_locus_tag="AW53_25060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="WP_000184723.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKTL
                     SALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVDSK
                     TGKPKFSAAELVGALAGIAELPRNHPKWQEWERRGKELLTKDSA"
                     /name="conjugal transfer protein TraD"
     gene            1899..3449
                     /locus_tag="AW53_RS00015"
                     /old_locus_tag="AW53_25065"
     CDS             1899..3449
                     /locus_tag="AW53_RS00015"
                     /old_locus_tag="AW53_25065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_001624483.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSGN
                     MPSWAKKNPAELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGDRH
                     AYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKKASI
                     PQTAGERKAALVALRSRWADVQNEHLARYGHESRVDHRSLKEQGINRTPEVHLGPVQAA
                     SLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPELLLQYR
                     KVMKTVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARYLDKLGR
                     NVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHERNEFRNKL
                     QQAESEWDKENAAFKRTEGYKYVGDLDRYREREILAAASLENTRQKVAEEVSVARSQML
                     SLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWAREASRSNERDQDMER"
                     /name="MobA/MobL family protein"
     Typing          2..776
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.613"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          1900..3446
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.629"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgagcgccg cgcttcaata cttcgaagaa aatttacccc gccgtcccta tcacacggat
       61 gatctcgctt ttggtcttcg catctccggc aaagggcgtg cgctgcttgc gcggtacatc
      121 cagcagaacc agcctcatgc gcagttctgg ctggtttttg acgttgaccg cgagggggca
      181 gcgattgact ggagcgaccg gaacgccccc gcgccgaaca tcaccgttaa aaatcctgtg
      241 aacggacacg ctcacctgct ctatgcactc aatatcgccg tgagaaccgc gcctgatgcg
      301 tcggttaagg cgctgaaata tgccgcagcg gttgaacgtt cgctgtgtga gaaactttgt
      361 gctgatgtga actacagcgg actgatttgc aaaaatccgt tccacctgga atggcaggtg
      421 atggagtggc gcgaggaagc ctataccctc gatgaactgg ctgattatct cgatttgagc
      481 gcctcagcgc gtcgtagcat cgataaacat tacgggatgg ggcgaaactg ccacctgttc
      541 gaaatgacgc gcaaatgggc ttacagggcg attcgtcagg gctggccagc attctcacag
      601 tggcttgatg ccgtgattca gcgtgtcgaa atgtacaacg catcgcttcc cgttccgctt
      661 tctccgcctg aatgtcgggc tattggcaag agcattgcga aatacacgca caggaacttc
      721 acgccggaaa ctttcgcaca gtatgtggct gatacgcaca cgccagaaat tcaggcagca
      781 cgcggtcgca agggcgggaa ggccaattcg tcagaaaatc agtcggacaa agggaaaaaa
      841 agcgccgctg ttcggtggac tgctaacgac gacaaacgtc gtagggcgct tgatatgtat
      901 atcttgggag cgtcaacgga agatattgca gtggcggttg gtgttagcag ccggactatt
      961 cgacgctgga tggataattc tggagaatgg ttaaccaaga aacaaataat taaattttaa
     1021 ttaacagaaa aatgacaatt accccctgtt tttgttaatg ggtggttaaa ttcgcggaca
     1081 tgaacaagcc tatatcagat aacagcgcct ttcggcgtct ttttgagcag cgggctttcc
     1141 ggcggttttc tcctgtcagc ccagcaatgg tgcggcttac cgcatgattg aggtggttgt
     1201 gctcgccgca gtctcatgac cgagcgtagc gagcgaatga gcgaggaagc accagggaaa
     1261 cggaacgtga acggaggctc ttacgcactg tctttggtta gtagctcctt cccgcgtctt
     1321 tcccattcct gccattttgg gtggttgcgc ggtagctctg cgattcctgc gagtgcgcct
     1381 accagttcgg cagcactaaa ctttggtttt ccggttttgc tgtccaccag tcctgccaca
     1441 atcatgaggc ctgcggcctt gtagagttca tgatcccgcg cctttcgttc cgcccttgcg
     1501 gctgccttcc gttctgccgc tatgattgcc gttaccctgg cttttgctgc ggctgctttc
     1561 tctgcggttt tttctgcccg tatcagtgcg gacaacgttt tttcatccgt cgttgttcgg
     1621 ttttttttct ctgccagtaa cacaagtaat ctctgctgct ctgacggtga tttcagtccg
     1681 ttgatgtagg caatttttgc acttaaccac tcttcacgat ttgtcattct tacctctgca
     1741 tttttgccgt taatgtgagt tgttattgtg cataatatca ccttgtctgc ctgcgtgtga
     1801 gaccgtaaaa tcatccctga ttaattcagg gatgcgcact tagtagtttc tctccttcgt
     1861 cgagaaactg tgcgctcctg cggagggcta aaaggcagat ggcaagctac cattgcaccg
     1921 tcaaagctgg agcaaaaggc agtgccttaa aacatgctga ttacatttcc agatccggcg
     1981 aatataagag ctacaaatcg cgggaggatc tggaattttc gtcatcaggt aacatgccat
     2041 catgggcgaa gaaaaatccc gcagagctat ggaaagccgc agatgaattt gaacgaaaaa
     2101 acgggactgc ataccgtgaa attgagatcg cgttaccgcg tgaactgaca cgcgaacaac
     2161 ggatagaact tgttgaagat ttcgtgcaaa aggaacttgg cgatcgccat gcctaccagt
     2221 acgcgatcca caatccgcca ggtgcaatcg acggaaagga acagccacac gcgcatatca
     2281 tgttttgcga gcggattaat gatggtattg aacgcgatcc gcagcaattt tttaaacgtg
     2341 ccaacagcaa atcaccagaa cggggaggcg caaaaaaagc gagtattccc cagacagccg
     2401 gagagcgaaa agccgccctt gttgcgctgc gttcccgctg ggcagatgtg cagaatgagc
     2461 accttgcgcg atacggtcac gagtcgcgcg tagatcatcg ttctctgaaa gaacagggta
     2521 tcaatcgcac gccggaagtt catcttggcc ccgttcaggc cgccagtctc aatggtgagc
     2581 agattgttgc aatccaggaa cggaggaatg ccgagcggga actcaagacc gccagagatg
     2641 ccgcaaatgc cattcagcag gaacaggagc aaaagcaaaa aatcaaggca gttgagcctg
     2701 ttcgttcagc ccgttcaccg gagttattgc ttcagtaccg caaggttatg aaaacggtca
     2761 ttcagggaga agcaaggctt gctcgtttag gggatgccaa tcccaatgcg ctcaaagaac
     2821 ataagctgct tcagaatgcg aaagcaaaaa aagactctct ttccgaatgg agcaggcgaa
     2881 tatatgaagg ggcacggtat ttagacaaac tggggcgtaa tgtcgtttcc gcacaaaggg
     2941 agctgcggga gctacaggaa caacgcaatg ctttgaatgg gattcgtggc ctgtttcggg
     3001 gggctgacaa aagggagatt gatgcgcgta ttctggagca aaaaagtgtg ctggaaaccg
     3061 ctgaacatga aaggaatgaa ttcaggaaca agctacagca agccgaatcc gagtgggaca
     3121 aagaaaacgc tgcttttaag cgtaccgagg gatataagta cgttggggat ctggacaggt
     3181 acagagaacg tgagattctg gccgcggcat ctttagagaa taccaggcaa aaggttgctg
     3241 aagaagtatc cgttgcccgt agccagatgt tatctctgga gcctgaactc agtatatctg
     3301 gagatgaaaa agctcaaatg cgacatgagt tactggcaga aatggcgcag gaacggcagc
     3361 aacaggagga aaaggcactg cgtatacagc gatcctgggc cagggaggca tcacgtagta
     3421 acgaacgtga tcaagatatg gagcgttgaa aatgtagcaa tatcgggact gcgccccgaa
     3481 ccccgccaac gtttcacgga acgcgaaaaa attccgcgtc ccgttcaccg ttttctgatg
     3541 agaaagtttg ctgttttgac ccgttcgccc ttctgaacgc tcgaaacaga tcgcgcatcg
     3601 ctttcgtgca tagttatgca acgctctgaa aacgattctg acgcgttttt ctggtttggc
     3661 ctggtgtttt cctgtctttt tgcgtttttt gcgtcaggaa gcgactgagg gcgttttacg
     3721 gggtacgtac aacaggagtt atggtaaatg gatcgggttt gcgggaagac tcgacaggtt
     3781 ttgtcgttgg gggtagtgta agcgactgaa aaacaaacgc ccctgaaatt cgtgtctatc
     3841 cgccaagact gtcacgaaaa tacaggggcg atgtcggtcg ataacctgga aggaatcgta
     3901 acac
//
