LOCUS       NZ_CP019566             2622 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Staphylococcus aureus strain SR434 plasmid pSR03, complete sequence.
ACCESSION   NZ_CP019566
VERSION     NZ_CP019566.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06277866
            Assembly: GCF_001986135.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2622)
  AUTHORS   Chen,Y.
  TITLE     Complete Genome Sequence of a Community-Associated
            Methicillin-Resistant Staphylococcus aureus Strain of Sequence type
            88 from China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2622)
  AUTHORS   Chen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2017) Infectious Diseases, Zhejiang University, 3
            East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: DEC-2016
            Assembly Method                   :: HGAP v. Dec-2016
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/05/2024 01:39:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,860
            CDSs (total)                      :: 2,778
            Genes (coding)                    :: 2,699
            CDSs (with protein)               :: 2,699
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 39 of 79
            Pseudo Genes (incomplete)         :: 39 of 79
            Pseudo Genes (internal stop)      :: 18 of 79
            Pseudo Genes (multiple problems)  :: 15 of 79
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019566.1.
            Bacteria and source DNA available from Yunsong Yu.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2622
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SR434"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pSR03"
                     /geo_loc_name="China: Hangzhou"
                     /lat_lon="30.26 N 120.20 E"
                     /collection_date="2015-11-26"
                     /collected_by="Yan Chen"
     gene            complement(959..1957)
                     /locus_tag="BZP34_RS14835"
                     /old_locus_tag="BZP34_14835"
     CDS             complement(959..1957)
                     /locus_tag="BZP34_RS14835"
                     /old_locus_tag="BZP34_14835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_077156143.1"
                     /translation="MQYNTTKYIDENQDNETLKDMSKNGKRRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLYKTWFCKSKLCPVCNWRRSMKNSYQAQKVI
                     EEVVKEKPKARWLFLTLSTKNAIDGETLEQSLKHLTKAFDRLSRYKKVKQNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVENAYFRKKENYITQEEWINLWQKALQVDYKPVANIKAI
                     KPNKKGDKDIQAAIKETSKYSVKSSDYLTGNHEKDAEIVQDLEQGLYRKRMLSYGGLLK
                     QKHKLLNLDDAEEGNLIQTSDEEKTTEEEQKAHSITAIWNFEKQNYFLKNL"
                     /name="protein rep"
     gene            complement(2203..2622)
                     /gene="fosB"
                     /locus_tag="BZP34_RS14845"
                     /old_locus_tag="BZP34_14845"
     ARG             complement(2207..2622)
                     /name="fosB"
                     /gene="fosB"
                     /gene_name="FosB1/FosB3 family fosfomycin resistance
                     bacillithiol transferase"
                     /tool="amrfinderplus"
                     /drug_class="FOSFOMYCIN"
                     /identity="99.28"
                     /coverage="100.0"
     ARG             complement(2204..2622)
                     /name="FosB4"
                     /gene="FosB4"
                     /gene_name="fosfomycin thiol transferase"
                     /tool="rgi"
                     /drug_class="phosphonic acid antibiotic"
                     /identity="99.28"
                     /coverage="100.0"
     Typing          complement(960..1957)
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.695"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 attctccctc ccttttttta aaattttaac ctaattgctt tattccaatt gctttattga
       61 cgttgagcct cggaaccctt aacaatccca aaacttgtcg aatggtcggc ttaatagctc
      121 acgctatgcc gacattcgtc tccaagttta gttaagggtt cttctcaacg cacaataaat
      181 tttctcggca taaatgcgtg ttctattttt tatttttact cctcttgata gcaaaaaacg
      241 ccattccaat acaaaaccac atacctataa tcgatatcca aatagcagtc ataaaatcgc
      301 tcctttttaa caaactttat cacaatagtt atcgctttac aggtctgatt ttcgtcgtta
      361 taatctagtt aaatcccgta agggcgcact tatgcgttct aaaaagaacg catgcaaaaa
      421 ccataatcga cctccgtcga tttttatatc aaatacaaaa gaatcggtgt tgtagcacag
      481 atataaaaat taatactaca tacttaagaa tcggcgttgt agcgcagata taaaaattaa
      541 tgctacacac ttaagaatcg gtgtcgtggc acagatataa aaattaattc cacgataaaa
      601 gaatagctct ttaaaagtca gttcgtttta tacggattgg cttttttatt ttgtctaatt
      661 ttaaatacct ttatttttaa ttttaaaggg gtattttgaa gaattagggg ttatttatat
      721 agttttatac ctaaaaacct atattagctc ttaaaacgca aatgagagcc aaataaaaat
      781 aattgttttt cacaaacaaa aattggagca aaaccagtgt cgaatttttg agatactggc
      841 ccatttacat gcaaatttaa aaattggcat aaaaaatggg caaccatgcc ggttgaacac
      901 tatagttcct gcaggggcaa aaaagcataa aaaaaacgct agctttgata agctaacgtt
      961 acaaattttt taagaaataa ttttgttttt cgaaattcca aatagccgta attgaatggg
     1021 ctttttgttc ttcttcagtc gttttttctt catcgctcgt ttgaattaaa ttaccttctt
     1081 cggcatcgtc taaatttaaa agtttatgtt tttgtttaag taaaccaccg taacttaaca
     1141 tgcgttttct gtataaacct tgttctaaat cttgaacaat ttctgcgtct ttttcatggt
     1201 ttcctgttaa gtaatcggac gacttaaccg agtattttga tgtctcttta attgcagctt
     1261 gtatatcttt atcgcctttt ttattcggtt taattgcttt gatatttgcg actggtttgt
     1321 aatcaacttg aagtgctttt tgccataaat tgatccactc ttcttgcgtt atataattct
     1381 ctttttttct aaaataagca ttttcaacac acaataaaac gtgcatatgt tgattataac
     1441 ttccgtcatt tttgttaact gtaacttcag ttgaacgcat aaaaccaatc aaattttgtt
     1501 ttactttttt atatctactc aatctatcaa aagctttagt taaatgtttt aaactctgct
     1561 ctaaagtttc gccgtcaatc gcattttttg ttgaaagtgt taaaaacaac catcgtgctt
     1621 ttggtttttc tttaacgact tcctcaatta ctttttgggc ttgataactg tttttcattg
     1681 aacgcctcca attacaaacc ggacataatt tagacttaca aaaccatgtt ttataaagtt
     1741 ttaaataccc ttcatcagtc ggcttaaatt ctaagacgtt accacattgt tttacgttaa
     1801 aagccttttt aatttttaaa atttccagta tatctgcata acttacattg tcgattttct
     1861 tctctctcca tgggcgtcgt ttcccgtttt tagacatatc tttcaatgtt tcattatctt
     1921 gattttcgtc tatatatttt gtagtattat attgcatata aaaagacctc cagtagtttt
     1981 ttattgagta gacgctttaa tcatactact ggggtttttt tatgtcaaaa attcttttca
     2041 cgcataaaaa acgctctaaa ccctttcatt tcaaggataa tgagcgtttt cataaaatcg
     2101 agttatttct atatagtatc aagacaagaa gaaactcgtt tcactcgttt caaaacaaag
     2161 cacataactt tgttttaaat ataaaaattc atatgaggtg ttttaaatat aaaaattcat
     2221 atgaggttta gcctctttat aatatctcaa tctatcttct aaacttcctg tatgcaattc
     2281 taatttatgg ccatctaaat cagtgaaata tattgatttt ttatctctaa tatctctatc
     2341 tctaccttca agaatattta cttcattttc tttcaaccag atataccaat cttcaaaatc
     2401 gttatctgaa attgtaaatg ctatatgagt atacgaatat ttaatttcgc ttctaggaat
     2461 atttttttct tcgttcaaag ctaaccatat accacctaaa ttaaaatagg ccgaggtctc
     2521 actttcaact aaaatgtcag cccctaaaat atctctgtaa aattcaattg atttagctat
     2581 attagaaacc gaataagtaa tatgatttat tcctttaatc at
//
