LOCUS       NZ_CP019565             2473 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Staphylococcus aureus strain SR434 plasmid pSR02, complete sequence.
ACCESSION   NZ_CP019565
VERSION     NZ_CP019565.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN06277866
            Assembly: GCF_001986135.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2473)
  AUTHORS   Chen,Y.
  TITLE     Complete Genome Sequence of a Community-Associated
            Methicillin-Resistant Staphylococcus aureus Strain of Sequence type
            88 from China
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2473)
  AUTHORS   Chen,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JAN-2017) Infectious Diseases, Zhejiang University, 3
            East Qingchun Road, Hangzhou, Zhejiang 310016, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: DEC-2016
            Assembly Method                   :: HGAP v. Dec-2016
            Genome Coverage                   :: 200.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/05/2024 01:39:46
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,860
            CDSs (total)                      :: 2,778
            Genes (coding)                    :: 2,699
            CDSs (with protein)               :: 2,699
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 79
            CDSs (without protein)            :: 79
            Pseudo Genes (ambiguous residues) :: 0 of 79
            Pseudo Genes (frameshifted)       :: 39 of 79
            Pseudo Genes (incomplete)         :: 39 of 79
            Pseudo Genes (internal stop)      :: 18 of 79
            Pseudo Genes (multiple problems)  :: 15 of 79
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019565.1.
            Bacteria and source DNA available from Yunsong Yu.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2473
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="SR434"
                     /isolation_source="skin"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pSR02"
                     /geo_loc_name="China: Hangzhou"
                     /lat_lon="30.26 N 120.20 E"
                     /collection_date="2015-11-26"
                     /collected_by="Yan Chen"
     gene            111..170
                     /gene="ermCL"
                     /locus_tag="BZP34_RS15170"
     CDS             111..170
                     /gene="ermCL"
                     /locus_tag="BZP34_RS15170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002497446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA methylase leader peptide ErmCL"
                     /protein_id="WP_002497446.1"
                     /translation="MGIFSIFVISTVHYQPNKK"
                     /name="ermCL"
     gene            231..965
                     /gene="erm(C)"
                     /locus_tag="BZP34_RS14825"
                     /old_locus_tag="BZP34_14825"
     ARG             232..962
                     /name="erm(C)"
                     /gene="erm(C)"
                     /gene_name="23S rRNA (adenine(2058)-N(6))-methyltransferase
                     Erm(C)"
                     /tool="amrfinderplus"
                     /drug_class="LINCOSAMIDE/MACROLIDE/STREPTOGRAMIN"
                     /identity="100.0"
                     /coverage="100.0"
     gene            1413..1889
                     /locus_tag="BZP34_RS14830"
                     /old_locus_tag="BZP34_14830"
     CDS             1413..1889
                     /locus_tag="BZP34_RS14830"
                     /old_locus_tag="BZP34_14830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000664727.1"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA];
                     GO:0006276 - plasmid maintenance [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="WP_000664727.1"
                     /translation="MKERYGTVYKGSQRLIDEESGEVIEVDKLYRKQTSGNFVKAYIVQ
                     LISMLDMIGGKKLKIVNYILDNVHLSNNTMIATTREIAKATGTSLQTVITTLKILEEGN
                     IIKRKTGVLMLNPELLMRGDDQKQKYLLLEFGNFEQEANEKQENALSDYYSFKD"
                     /name="replication/maintenance protein RepL"
     ARG             232..965
                     /name="ErmC"
                     /gene="ErmC"
                     /gene_name="Erm 23S ribosomal RNA methyltransferase"
                     /tool="rgi"
                     /drug_class="macrolide antibiotic; lincosamide antibiotic;
                     streptogramin antibiotic; streptogramin A antibiotic;
                     streptogramin B antibiotic"
                     /identity="99.59"
                     /coverage="100.0"
     Typing          1414..1899
                     /name="rep_cluster_1947"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="99.591"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ttattcaata atcgcatcag attgcagtat aaatttaacg atcactcatc atgttcatat
       61 ttatcagagc tcgtgctata attatactaa ttttataagg aggaaaaaat atgggcattt
      121 ttagtatttt tgtaatcagc acagttcatt atcaaccaaa caaaaaataa gtggttataa
      181 tgaatcgtta ataagcaaaa ttcattataa ccaaattaaa gagggttata atgaacgaga
      241 aaaatataaa acacagtcaa aactttatta cttcaaaaca taatatagat aaaataatga
      301 caaatataag attaaatgaa catgataata tctttgaaat cggctcagga aaagggcatt
      361 ttacccttga attagtacag aggtgtaatt tcgtaactgc cattgaaata gaccataaat
      421 tatgcaaaac tacagaaaat aaacttgttg atcacgataa tttccaagtt ttaaacaagg
      481 atatattgca gtttaaattt cctaaaaacc aatcctataa aatatttggt aatatacctt
      541 ataacataag tacggatata atacgcaaaa ttgtttttga tagtatagct gatgagattt
      601 atttaatcgt ggaatacggg tttgctaaaa gattattaaa tacaaaacgc tcattggcat
      661 tatttttaat ggcagaagtt gatatttcta tattaagtat ggttccaaga gaatattttc
      721 atcctaaacc taaagtgaat agctcactta tcagattaaa tagaaaaaaa tcaagaatat
      781 cacacaaaga taaacagaag tataattatt tcgttatgaa atgggttaac aaagaataca
      841 agaaaatatt tacaaaaaat caatttaaca attccttaaa acatgcagga attgacgatt
      901 taaacaatat tagctttgaa caattcttat ctcttttcaa tagctataaa ttatttaata
      961 agtaagttaa gggatgcata aactgcatcc cttaacttgt ttttcgtgta cctatttttt
     1021 gtgaatcgat tatgtctttt gcgcattcac ttcttttcta tataaatatg agcgaagcga
     1081 ataagcgtcg gaaaagcagc aaaaaggaaa ctttttgctg ttggagcatg ggggttcagg
     1141 gggtgcagta tctgacgtca atgccgagcg aaagcgagcc gaagggtagc atttacgtta
     1201 gataaccccc tgatatgctc cgacgcttta tatagaaaag aagattcaac taggtaaaat
     1261 cttaatatag gttgagatga taaggtttat aaggaatttg tttgttctaa tttttcactc
     1321 attttgttct aatttctttt aacaaatgtt cttttttttt tagaacagtt atgatatagt
     1381 tagaatagtt taaaataagg agtgagaaaa agatgaaaga aagatatgga acagtctata
     1441 aaggctctca gaggctcata gacgaagaaa gtggagaagt catagaggta gacaagttat
     1501 accgtaaaca aacgtctggt aacttcgtaa aggcatatat agtgcaatta ataagtatgt
     1561 tagatatgat tggcggaaaa aaacttaaaa tcgttaacta tatcctagat aatgtccact
     1621 taagtaacaa tacaatgata gctacaacaa gagaaatagc aaaagctaca ggaacaagtc
     1681 tacaaacagt aataacaaca cttaaaatct tagaagaagg aaatattata aaaagaaaaa
     1741 ctggagtatt aatgttaaac cctgaactac taatgagagg cgacgaccaa aaacaaaaat
     1801 acctcttact cgaatttggg aactttgagc aagaggcaaa tgaaaaacaa gaaaatgcat
     1861 tatctgatta ttattctttc aaggactagt ataacataaa atcgtctaca aatagacaaa
     1921 aaacctgcac gcttaatgta gatcaaaagc ttaacgcaaa tgaaatagat tgacctccca
     1981 ataacaccac gtagttattg ggaggtcaat ctatgaaatg cgattaagct ttttctaatt
     2041 cacataagcg tgcaggttta aagtacataa aaaatataat gaaaaaaagc atcattatac
     2101 taacgttata ccaacattat actctcatta tactaattgc ttattccaat ttcctattgg
     2161 ttggaaccaa caggcgttag tgtgttgttg agttggtact ttcatgggat taatcccatg
     2221 aaacccccaa ccaactcgcc aaagctttgg ctaacacaca cgccattcca accaatagtt
     2281 ttctcggcat aaagccatgc tctgacgctt aaatgcacta atgccttaaa aaaacattaa
     2341 agtctaacac actagactta tttacttcgt aattaagtcg ttaaaccgtg tgctctacga
     2401 ccaaaagtat aaaaccttta agaactttct tttttcttgt aaaaaaagaa actagataaa
     2461 tctctcatat ctt
//
