LOCUS       NZ_CP019021             1459 bp    DNA     circular CON 13-JUN-2024
DEFINITION  Escherichia coli strain Ecol_881 plasmid pEC881_8, complete
            sequence.
ACCESSION   NZ_CP019021
VERSION     NZ_CP019021.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05511150
            Assembly: GCF_002012225.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1459)
  AUTHORS   Stoesser et al,N.
  TITLE     Unpublished
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1459)
  AUTHORS   Stoesser et al,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2016) Microbiology (Research), University of
            Oxford, Headley Way, Oxford OX3 9DU, United Kingdom (Great Britain)
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. unspecified
            Genome Coverage                   :: XX
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002012225.1-RS_2024_06_13
            Annotation Date                   :: 06/13/2024 03:39:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,524
            CDSs (total)                      :: 5,400
            Genes (coding)                    :: 5,174
            CDSs (with protein)               :: 5,174
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 97
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 226
            CDSs (without protein)            :: 226
            Pseudo Genes (ambiguous residues) :: 0 of 226
            Pseudo Genes (frameshifted)       :: 83 of 226
            Pseudo Genes (incomplete)         :: 157 of 226
            Pseudo Genes (internal stop)      :: 44 of 226
            Pseudo Genes (multiple problems)  :: 51 of 226
            Pseudo Genes (short protein)      :: 1 of 226
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019021.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1459
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Ecol_881"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pEC881_8"
                     /geo_loc_name="Colombia: Cali"
                     /lat_lon="3.45 N 76.54 W"
                     /collection_date="2013"
                     /collected_by="Merck Study for Monitoring of Antimicrobial
                     Resistance Trends (SMART)"
     gene            complement(join(1367..1459,1..348))
                     /locus_tag="BE930_RS00005"
                     /old_locus_tag="BE930_00005"
     CDS             complement(join(1367..1459,1..348))
                     /locus_tag="BE930_RS00005"
                     /old_locus_tag="BE930_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     Typing          complement(678..758)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.902"
                     /coverage="87.0"
                     /evalue="4.46e-26"
     Typing          873..1133
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.13"
                     /coverage="100.0"
                     /evalue="1.84e-104"
ORIGIN
        1 ccggtatgtt tttgatctgc cgactttagg tccctcaaag atcaccccaa catccagtag
       61 cgcgcgaacg gcgcgactaa cattcgtttt ctgcatccct aaagtttcag caatatctgc
      121 ttgggcgatc tgaatgaagt tttcgtaatc cagatctgca agcatcagca ttaagacctt
      181 gaattgctcc ccggttaatt ccttagccaa gatccgtaat gcgtcttgat tcatggtgaa
      241 atgcctctga aatgctgatt tttgtttagg gcggataacg gcaacgaagc cgccgataat
      301 ctcaccctgg tcatttatct gagtgattct ctcgacatcc ttactcatct ttgaacccta
      361 tttgagttat caataatgat aacagtgtta tcattattga taactatgtc aactgtaacc
      421 cttagatttt attaatgttt ttattctcct ttctgtatct ttatattagg cgtctaacgc
      481 attgattcca ttagatattt atcctagctg ctctttgggg tgtcggggcg aagccctgac
      541 ccagtcacgt agcgatagcg gagtgtatac tggcttactc ctctgcaagc ctcgtcagcc
      601 atgatttttg tccgatttct cgctctccac gttcaacagc tccatcatgt ttttgccgtc
      661 cgttcaccgt taaaacgcct cagaaatcag gacaggatgt gcaaatgtaa taccgtcacc
      721 cgcgacgata ttccgtttgc catctggtca gagcttcgcc ccgacacccc gtatcagtgc
      781 gtacgtgctc aatgtggttt cctgttctct tccgcttcct cgcccactcg ctcactaacg
      841 ttcggtcgct ggggctgcgg cgagcggtgc cacctctcgc atgctgtcgg tgattccgct
      901 gttgttcttt cggggatgag tcgtcagata gcccttcaaa cgcgctcaga agctctcaga
      961 cgcacgaggc ggggtttaaa tgcccgtcag ggcatggaag gcgcgaaaaa cgcttacaga
     1021 gcgtttcagg aggtcaggcg cgccgatacc cctagccagg ggctttcagg tcgccaggaa
     1081 ccgcgccagc cccctgcaaa gcccatttgc acggtacaag cagccactcg gttggtaggt
     1141 ggtcgtagac cgtcggtgtt acagcgatgg ggggtctggg ggtctcccca gacggtttcc
     1201 ggttgcgctc aaggcgctgc cggaaccgtg gcggctcggt cgttctggag atcggggagc
     1261 aaaaacacgc aagggatttt gaggcggcaa aagagcaatg caggatagac aatccactag
     1321 aaattgcatg caatgttctg tggattgtcc gcctgccgct ggctctttaa atccggccgc
     1381 cctgaatgac actaaagccg tttttgagtg cctttttgtg gttggttacg gtgcctttcc
     1441 aaccaaattg ttcattcag
//
