LOCUS       NZ_CP019004             1597 bp    DNA     circular CON 13-JUN-2024
DEFINITION  Escherichia coli strain Ecol_AZ155 plasmid pECAZ155_4, complete
            sequence.
ACCESSION   NZ_CP019004
VERSION     NZ_CP019004.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05511168
            Assembly: GCF_002012125.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Stoesser et al,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-DEC-2016) Microbiology (Research), University of
            Oxford, Headley Way, Oxford OX3 9DU, United Kingdom (Great Britain)
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. unspecified
            Genome Coverage                   :: XX
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_002012125.1-RS_2024_06_13
            Annotation Date                   :: 06/13/2024 03:27:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,043
            CDSs (total)                      :: 4,919
            Genes (coding)                    :: 4,686
            CDSs (with protein)               :: 4,686
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 90
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 233
            CDSs (without protein)            :: 233
            Pseudo Genes (ambiguous residues) :: 0 of 233
            Pseudo Genes (frameshifted)       :: 77 of 233
            Pseudo Genes (incomplete)         :: 149 of 233
            Pseudo Genes (internal stop)      :: 56 of 233
            Pseudo Genes (multiple problems)  :: 45 of 233
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP019004.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="Ecol_AZ155"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="pECAZ155_4"
                     /geo_loc_name="China: Beijing"
                     /lat_lon="39.90 N 116.41 E"
                     /collection_date="2013"
                     /collected_by="AstraZeneca global surveillance study of
                     antimicrobial resistance"
     gene            complement(91..531)
                     /locus_tag="BE948_RS02555"
                     /old_locus_tag="BE948_02625"
     CDS             complement(91..531)
                     /locus_tag="BE948_RS02555"
                     /old_locus_tag="BE948_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000031238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000031238.1"
                     /translation="MSKDVERITQINDQGEIIGGFVAVIRPKQKSAFQRHFTMNQDALR
                     ILAKELTGEQFKVLMLMLADLDYENFIQIAQADIAETLGMQKTNVSRAVRALLDVGVIF
                     EGPKVGRSKTYRLNEQFGWKGTVTNHKKALKNGFSVIQGGRI"
                     /name="hypothetical protein"
     gene            960..1514
                     /locus_tag="BE948_RS28055"
     CDS             960..1514
                     /locus_tag="BE948_RS28055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000264305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rep protein"
                     /protein_id="WP_249532699.1"
                     /translation="MRTCSMWFPVLFRFLAHSLTTFGRWGCGERCHLSHIACDSVVVLS
                     GMSRQIALQTRSEALRRTKRVLNARQGMEGAKNAYRGSQEVRRADTPNQGLSGRQEPRQ
                     PPAKPNCTEQAVTQLVGGRRPLILQQWGSGVLPRRFPVALKALPKPWQTMAKIRLSAFL
                     ALAANTNHPMVGLCQKRAEVF"
                     /name="rep protein"
     Typing          1055..1305
                     /name="Col(MG828)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.254"
                     /coverage="96.0"
                     /evalue="1.43e-100"
ORIGIN
        1 ttttgaggcg gcaaaagagc aatgcaggat agacaatcat ggtcaaaacg ttaacacgta
       61 gcccctgatt gtccgcctgc cgctggctct ttaaattcgg ccgccctgaa tgacactaaa
      121 gccgtttttg agtgcctttt tgtggttggt tacggtgcct ttccaaccaa attgttcatt
      181 cagccggtat gtttttgatc tgccaacttt aggtccctca aagatcaccc caacatccag
      241 tagcgcgcga acggcgcgac taacattcgt tttctgcatc cctaaagttt cagcaatatc
      301 tgcttgggcg atctgaatga agttttcgta atccagatct gcaagcatca gcattaagac
      361 cttgaattgc tccccggtta attccttagc caagatccgt aatgcgtctt gattcatggt
      421 gaaatgcctc tgaaatgctg atttttgttt agggcggata acggcaacga agccgccgat
      481 aatctcaccc tggtcattta tctgagtgat tctctcgaca tccttactca tctttgaacc
      541 ctatttgagt tatcaataat gataacagtg ttatcattat tgataactat gtcaactgta
      601 acccttagat tttattaatg tttttattct cctttctgta tctttatatt aggcatctaa
      661 cgcattgatt ccattagata tttatcctag ctgctctttg gggtgtcggg gcgcagccat
      721 gacccagtca cgtagcgata gcggagtgta tactggctta ctcctctgca agcctcgtca
      781 gctgtgattt ttgccagatt tcgtggtttt cacgttcaac agctcctgca cgttttttgc
      841 cgtccgttca ccgttaaact ccgcagaaat cgggacagga tgtgcaaatg taataccgtc
      901 acccgcgacg atattccgtt tgccatctgg tcagggcttc accccgacac cccgcatcag
      961 tgcgtacgtg ctcaatgtgg tttccggttc tcttccgctt cctcgcccac tcgctcacta
     1021 cgttcggtcg ctggggctgc ggcgagcggt gtcacctctc gcatattgcc tgtgattccg
     1081 ttgttgttct ttcggggatg agtcgtcaga tagcccttca aacgcgctca gaagctctca
     1141 gacgcacgaa acgggtttta aatgcccgtc agggcatgga aggcgcgaaa aacgcttaca
     1201 gaggctctca ggaggtcagg cgcgccgata cccctaacca ggggctttca ggtcgccagg
     1261 aaccgcgcca gccccctgca aagcccaact gcacggaaca ggcagtcact cagctggtag
     1321 gtggtcgtag accgttgata ttacagcaat gggggtctgg ggttctcccc agacggtttc
     1381 cggttgcgct caaggcgctg ccgaaaccgt ggcaaacgat ggcgaagatt agattgagcg
     1441 cgtttctggc gcttgctgct aacacaaacc atcccatggt tggtttatgc cagaaacgcg
     1501 cggaagtgtt ttagcgtatt gcccgatcaa cgtctagtca caggacctgt tcgaattgcg
     1561 tagttctgga gaacgggggt gcaaaaaatg caaggga
//
