LOCUS       NZ_CP018738             5259 bp    DNA     linear   CON 05-MAR-2024
DEFINITION  Klebsiella pneumoniae strain Kp_Goe_121641 plasmid pKp_Goe_641-3.
ACCESSION   NZ_CP018738
VERSION     NZ_CP018738.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05412452
            Assembly: GCF_001913175.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 5259)
  AUTHORS   Bohne,W., Bunk,B., Overmann,J., Gross,U. and Zautner,A.E.
  TITLE     A nosocomial outbreak of oxa48-expressing Klebsialla pneumoniae in
            Lower Saxony
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5259)
  AUTHORS   Bohne,W., Bunk,B., Overmann,J., Gross,U. and Zautner,A.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-DEC-2016) Department for Medical Microbiology,
            University Medical Center Goettingen, Kreuzbergring 57, Goettingen,
            Niedersachsen 37075, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2016
            Assembly Method                   :: SMRT Analysis Software v. 2.3.0
            Genome Coverage                   :: 308.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/04/2024 14:58:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,592
            CDSs (total)                      :: 5,471
            Genes (coding)                    :: 5,333
            CDSs (with protein)               :: 5,333
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 138
            CDSs (without protein)            :: 138
            Pseudo Genes (ambiguous residues) :: 0 of 138
            Pseudo Genes (frameshifted)       :: 55 of 138
            Pseudo Genes (incomplete)         :: 78 of 138
            Pseudo Genes (internal stop)      :: 24 of 138
            Pseudo Genes (multiple problems)  :: 15 of 138
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP018738.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
FEATURES             Location/Qualifiers
     source          1..5259
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Kp_Goe_121641"
                     /isolation_source="urine sample"
                     /host="Homo sapiens"
                     /culture_collection="DSM:103707"
                     /db_xref="taxon:573"
                     /plasmid="pKp_Goe_641-3"
                     /geo_loc_name="Germany: Goettingen"
                     /lat_lon="51.53919016 N 9.91156249 E"
                     /collection_date="2013-03-12"
                     /collected_by="Andreas Erich Zautner"
                     /genotype="MLST ST101"
     gene            <1..303
                     /locus_tag="BB745_RS29475"
                     /old_locus_tag="BB745_05512"
                     /pseudo=""
     CDS             <1..303
                     /locus_tag="BB745_RS29475"
                     /old_locus_tag="BB745_05512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="incomplete; too short partial abutting assembly gap;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /name="mobilization protein"
     gene            307..519
                     /locus_tag="BB745_RS29480"
                     /old_locus_tag="BB745_05513"
     CDS             307..519
                     /locus_tag="BB745_RS29480"
                     /old_locus_tag="BB745_05513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1069..1332)
                     /locus_tag="BB745_RS29485"
                     /old_locus_tag="BB745_05515"
     CDS             complement(1069..1332)
                     /locus_tag="BB745_RS29485"
                     /old_locus_tag="BB745_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010891192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_054175658.1"
                     /translation="MAAYTSETEKFLQSVSSDQTWWKSRYNPGDSVPHSGIYRCTVCGK
                     EITSNGSDPFPPQNHHQHSQQQAIKWQLIVRTDTKGDRFGIK"
                     /name="hypothetical protein"
     gene            complement(1750..2166)
                     /locus_tag="BB745_RS29490"
     CDS             complement(1750..2166)
                     /locus_tag="BB745_RS29490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283459.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_032419562.1"
                     /translation="MSDQKNNLDIQKQTLESKWGKEALSMGWSAIPTSLFFLQGALNMT
                     PTTFNVLLHLIIHWWKPYDWPHPSQESIAVRMGVSSRTVQRSLQELENYGLLTKIRTSK
                     DNPKYKGRNIYDMSLLVKSLNILTPDLNAKLNEK"
                     /name="helix-turn-helix domain-containing protein"
     gene            2514..3188
                     /locus_tag="BB745_RS29495"
                     /old_locus_tag="BB745_05516"
     CDS             2514..3188
                     /locus_tag="BB745_RS29495"
                     /old_locus_tag="BB745_05516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001259273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="WP_032419561.1"
                     /translation="MRTIVYVDGFNFYHGLVKRSGYKWLDLYKLFEEQLLPIRARESQL
                     IQVKFFTAEIKAKFASRGELAHQAQQAYHRALVQIYGDKLQIIKGYYSERQECAMTFNE
                     GHPPSKTDRTTVWKLEEKQTDVRMALEMYRDAIRGEVEQLVLCTNDSDMIPPIEMIKAD
                     RPELKIGIVVPREQDTSRVISNLASLGDWSLPYVSYEALRLALLPDKVPTRRKPILKPN
                     HW"
                     /name="NYN domain-containing protein"
     gene            4179..4499
                     /locus_tag="BB745_RS29510"
                     /old_locus_tag="BB745_05518"
     CDS             4179..4499
                     /locus_tag="BB745_RS29510"
                     /old_locus_tag="BB745_05518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_042863636.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARAGRLPSI
                     SPALLRQLAGMGNNLNQIARKVNAGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGDD
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4708..>5139
                     /locus_tag="BB745_RS31555"
                     /pseudo=""
     CDS             4708..>5139
                     /locus_tag="BB745_RS31555"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            5177..>5259
                     /locus_tag="BB745_RS31515"
     CDS             5177..>5259
                     /locus_tag="BB745_RS31515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_272481998.1"
                     /translation="MSSLLALAKDLEQQSKAQQQSTGEMLKA"
                     /name="MbeB family mobilization protein"
     Typing          3891..4071
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.978"
                     /coverage="83.0"
                     /evalue="2.08e-53"
     Typing          complement(3431..3941)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.359"
                     /coverage="98.0"
                     /evalue="0.0"
     Typing          4..635
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.156"
                     /coverage="93.0"
                     /evalue="7.150000000000001e-122"
     Typing          4463..5256
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.566"
                     /coverage="95.0"
                     /evalue="2.28e-153"
ORIGIN
        1 gcgatgcagt cgaaccgcct gagcgtgctg cgtatggtcg gccggacgtg gctgaccatc
       61 accctggtct cggtactgct gatcgccacg agcgggagca ttctgtggtg gcaggggcag
      121 cagatcaccg ggaattaccg gactatccgg gcgcaggagc ggacgcaggc catgctgtcg
      181 gagaagaacc acggcgtgca gctgtcgctc tgcggggaga agaaactgtc ctgcgtcaaa
      241 gtgaacccga aagcgggagc ttacggggag gacgggaact ggatggtact ggagaggaaa
      301 tagcccatga cggaactgga aaaacagttg ctgaccgcat tagagcagct acatcaggac
      361 tactcgcaaa ggctggacga gtgggagagc gccttcgcgg aatggcagaa gatgtctggg
      421 cttatgcaac gggagaacgc ggcactgaac gagcgcgtga cgcgcttgag tcagcaggtg
      481 gcgaacttga gcaggcagtt acagcgtttg agccagtagt gcagcggcat gaaatggcgg
      541 tggccgccga acgggcatac gagcagcgac agcacgaaaa agagctggcg gaagcccgtt
      601 cccgtcagcg gagttatgac ggtccgacac tgggctgaac agtatcatcc ggtgacaggc
      661 cgcacgaaga agggctctta tttctcccgc taaataggtt cgtgatcaaa aagagcacgg
      721 cctataccta gggggaatta tgaaattgct taacgtcatt gaagctgtac ttaactgcct
      781 gtatctggcg accgagctgt gggactggct ggagaagcat tttcctgttt ttaaggcgtt
      841 catccggatt ctggcctgaa atcagactgt atgcatctgg ctgcatgacc atgcagccgg
      901 ggaaaattta tctgtcacga acggggcggt gtatcgggtg gtttgttgcc ggttttacct
      961 gactgccgtc ccgtttgtgg cgaacctgtc cggagcggtg cgggcaaggg atgttatggt
     1021 aaatatcttc gagcttcagg tacaaaaaaa gccccggagg gctctcaatc atttgattcc
     1081 gaaacggtca cctttagtgt ccgttctgac aatcaattgc catttgattg cttgttgctg
     1141 actgtgctga tgatggtttt gcggcgggaa cgggtcgctg ccgttactgg tgatctcttt
     1201 tccgcagacg gtacatcgat aaattccaga atggggaacg ctgtctcctg gattatatcg
     1261 tgacttccac catgtttgat cgctactgac gctttgtaaa aacttctctg tttcgctggt
     1321 atatgcagcc atttagcttt ccttttctga atttataggg cagagataga aaagccgccc
     1381 gctggggcgg cttttcgttg ccagtctaaa tatcaagcat attgggttaa catccaggtt
     1441 acagcctttc ctgcgtacgg aggcattaca ttaccttttg ctatcggggc tgtagtggaa
     1501 ggggttccta cgactttcca gacaccactt tcaggacact tttgtccggt agaagcagtc
     1561 gtaccaattg gtgctttaga catgctaatt cctctttttg tgttttgtcc gtattgctgt
     1621 ttgtgtagcg atactgatgt ttagtttaga aattagcttt caatagggag ctgttgtcat
     1681 tttctagaaa tgtgatgctg aacacctttt gtacagtgat gtgcgcgctt tggctgtcgg
     1741 aatttttggt tacttttcgt ttagtttggc gttgaggtct ggcgtaagaa tgtttagtga
     1801 cttaactaaa agagacatat cgtaaatgtt tcgccctttg tacttagggt tgtccttgct
     1861 tgtacgaatt tttgtaagca atccgtaatt ttcaagttct tggagtgagc gttgaactgt
     1921 tcttgatgaa actcccattc taaccgcgat gctctcttga gatggatgtg gccaatcata
     1981 gggtttccac cagtggataa ttagatgaag tagcacattg aatgttgtgg gggtcatatt
     2041 gagtgcgccc tgcaggaaga aaagggatgt aggaatggct gaccatccca tgcttaacgc
     2101 ttccttcccc catttagact caagtgtctg tttttgaatg tctaaattat ttttttgatc
     2161 tgacatatac caacctgcta agctgaagtc ttcttagaag acttcagctt agcaggttgg
     2221 taaattaatt catataatta gtacgacacc agtgcgctta taatatcatt atatttaact
     2281 atacttaatc tacactcacc tcttggtagc gcgattaagt tacgcagctc ccttgaggct
     2341 ctaaacctcc ctttaggtgg gcagcgatta agttacgcgt cttccttcag gagcttgaaa
     2401 ccgccctctc ggttagtttt aaccctgagg tactacaact taaactgttt gctaacgtta
     2461 gtttttgttg ttaaaaccgc ccttagaggc ggttttttta tgcgcgaaat aaaatgagaa
     2521 caatagttta cgtagatggg ttcaattttt atcacggatt ggttaagcgt tcgggatata
     2581 agtggttaga cctttataag ctctttgaag aacaactgct tccgataaga gcacgagaat
     2641 cacagttgat tcaggtgaag ttctttactg ctgagatcaa ggcaaagttt gcttctcggg
     2701 gtgaattggc gcaccaagct cagcaagcct accatcgagc attagtacag atctatggcg
     2761 ataagctaca gataataaaa ggttattact cagagcgtca ggaatgtgca atgaccttta
     2821 atgaggggca tcctccatca aaaacggata gaacaacggt ctggaagtta gaagaaaagc
     2881 agacagacgt tagaatggct ttagaaatgt atcgcgatgc gattcgtggt gaagtagaac
     2941 aattggttct ctgcactaac gactcagata tgataccgcc aatagaaatg ataaaagctg
     3001 atcggcctga gttaaaaata ggaatcgtag tgccaaggga acaggatact agtcgagtga
     3061 ttagtaatct ggctagttta ggggattgga gcttgccata tgtatcctat gaagccttaa
     3121 gattagcttt attgccagat aaagtcccca ctaggcggaa gccaatactg aagccaaatc
     3181 actggtaaac agccggatct tcttgtgatc cttttactct cgtcgtaatc tcatgccctg
     3241 caaacaaaaa aaccaccgct accaacggtg gttcgtttgc cggaatcaag agctaccaac
     3301 tctttttccc gaaggtaact ggctttcacg gagcgcagat accaaaactg tccttccagt
     3361 gtagccgcag tcaggccacc acttcaagaa ctctgtagaa gcactctact actctgctcc
     3421 gtgaatcctg ttaccagtgg ctgctgccag tggcgttttt gcgtgtcttt ccggattgga
     3481 ctcaagacga tagttaccgg aaaaggcgca gcggtcggac tgaacggggg gttcgtgcat
     3541 acagtccagc ttggagcgaa ctgcctaccc ggaactgagt gtcaggcgtg gaatgagaca
     3601 aacgcggcca taacagcgga atgacaccgg taaaccgaaa ggcaggaaca ggagagcgca
     3661 cgagggagcc accaggggga aacgcctggt atctttatag tcctgtcggg tttcgccacc
     3721 actgatttga gcgtcagatt tcgtgatgct tgtcaggggg gcggagccta tggaaaaacg
     3781 gcagcgccgc atccttttcc cgccctgctt gtcatgtcat atgcctttgc tcttatccgt
     3841 gtgtgcgtaa cgcccgccgc agccgaacgg caggagcgga agcgaccgag tgagcgagga
     3901 ggcgtcatat caccgtaacc tccattttct cctgtacgcc ctgtagctgc attttccccc
     3961 tgtcacatga agcactttca taaagtgtta ctcctccgta acatattgag ccagtataca
     4021 ctccgctagc gctacgtgac tggttcaggg ctgcgccccg aaacccgcta aaagccactg
     4081 acgcgcctgc ggcttgtcca acaccgtgcc gaccgggaaa catttcccgc ccgtcccggt
     4141 gttatcagga ggctactctg gcagacaaac gcaacaagat gctcacgatg tgggtgacgg
     4201 aagacgaaca ccggcggctg ctcgagcggt gcgacggcag gcagctggcg gcgtggatgc
     4261 gtcagacctg cctcgatgag aagccggcgc gtgccggcag actgccgtcg atatcgccgg
     4321 cgctgctgcg ccagcttgcc ggtatgggga acaacctgaa ccagatcgcc cggaaagtga
     4381 atgccggtgg tgccggtcat gaccgggtgc agattgtggc cgccctgatg gcaatcgacg
     4441 cgggactgga gcggctgcgg catgcggtgc tggaaaaagg gggggatgat gatcgttaaa
     4501 tttcaccccc gggggcgcgg tggtggtgcc ggtccggtgg attacctgct gggaaaagac
     4561 cggcagcgcg agggggcgac cgtgctgcag ggaaaaccgg aggaagtccg ggagcttatc
     4621 gatgcctcgc cgtatgcgaa aaagtacacc tccggcgtgc tgtcgttcgc ggaggctgaa
     4681 ctgccgcccg ggcagcggga gcagatcatg gccagctttg agcgggttct gatgcccggg
     4741 ctcgataaag accagtacag cattctgtgg gtggagcata ccgacaaggg gaggctggag
     4801 ctgaatttcc tgatccccaa cactgaactg ctgaccggga aacgcctgca gccgtactac
     4861 gatcgcgccg accggccgcg catcgatgcc tggcagaccg tggtgaacgg cagactgggg
     4921 ctgcatgatc caaacgcccc ggagaaccgg cggttactgg tcacgccgtc cgcactgccg
     4981 gaaacgaagc tggaagccgc tcaggcgatt acacgggggt tgctggcctt agcctcatcc
     5041 ggggagctca aaacgcgcga ggacgtcaca ggggcgctca cagcggcagg ttttgaggtg
     5101 gtccgcacca caaaaaacag tatcagcatt gccgacccgg acggggggcg aaacatccga
     5161 ctgaagggag ccatttatga gcagtctttt agcgctggcg aaggacttgg agcagcaatc
     5221 gaaagcgcag cagcagagta ccggcgagat gctgaaagc
//
