LOCUS       NZ_CP018446             3559 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Klebsiella pneumoniae strain Kp_Goe_822917 plasmid pKp_Goe_917-7,
            complete sequence.
ACCESSION   NZ_CP018446
VERSION     NZ_CP018446.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05412453
            Assembly: GCF_001902415.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 3559)
  AUTHORS   Bohne,W., Bunk,B., Overmann,J., Gross,U. and Zautner,A.E.
  TITLE     A nosocomial outbreak of oxa48-expressing Klebsialla pneumoniae in
            Lower Saxony
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3559)
  AUTHORS   Bohne,W., Bunk,B., Overmann,J., Gross,U. and Zautner,A.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2016) Department for Medical Microbiology,
            University Medical Center Goettingen, Kreuzbergring 57, Goettingen,
            Niedersachsen 37075, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2016
            Assembly Method                   :: SMRT Analysis Software v. 2.3.0
            Genome Coverage                   :: 117.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/04/2024 14:52:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,540
            CDSs (total)                      :: 5,416
            Genes (coding)                    :: 5,303
            CDSs (with protein)               :: 5,303
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 113
            CDSs (without protein)            :: 113
            Pseudo Genes (ambiguous residues) :: 0 of 113
            Pseudo Genes (frameshifted)       :: 44 of 113
            Pseudo Genes (incomplete)         :: 69 of 113
            Pseudo Genes (internal stop)      :: 15 of 113
            Pseudo Genes (multiple problems)  :: 15 of 113
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP018446.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3559
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Kp_Goe_822917"
                     /isolation_source="skin swab"
                     /host="Homo sapiens"
                     /culture_collection="DSM:103702"
                     /db_xref="taxon:573"
                     /plasmid="pKp_Goe_917-7"
                     /geo_loc_name="Germany: Goettingen"
                     /lat_lon="51.53919016 N 9.91156249 E"
                     /collection_date="2013-03-12"
                     /collected_by="Andreas Erich Zautner"
                     /genotype="MLST ST11"
     gene            complement(61..537)
                     /locus_tag="BB746_RS29565"
                     /old_locus_tag="BB746_29370"
     CDS             complement(61..537)
                     /locus_tag="BB746_RS29565"
                     /old_locus_tag="BB746_29370"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_077861907.1"
                     /translation="MTVLSTLNNLKSIPCINAFTGRANNSYLWRYVMEDHKDEFGATTI
                     KCFYLREEISEDYVSIYHSNKDYYEGMVRDVHKRIPVGKTKPAIYLSFDAAEVIEQVNK
                     PDKCIDIKDEGYPHLGLWYLFDINDEFTLIEVTTTILELSSFFQRNEGGVVVPL"
                     /name="hypothetical protein"
     gene            complement(537..1181)
                     /locus_tag="BB746_RS29570"
                     /old_locus_tag="BB746_29375"
     CDS             complement(537..1181)
                     /locus_tag="BB746_RS29570"
                     /old_locus_tag="BB746_29375"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_044816498.1"
                     /translation="MKYINHCDSEDYYITNDSIDLGVRYDVSDYNKLELNDLRDPDLFK
                     VLGRAFVVVENSVWESWNDDVKTLDCSGDGYESILKHYESLELSGEFLLFFKKIRSAIS
                     VYNREYEFCTGDLEPSLQAIVQLIRYAPELAAKKDAQIYFDKKSECFGLIYKQTKKSKG
                     TLNLIVKTNNEIIFSFVRKVSGVVKVTGRAYIGDSLDNSIAIKSLFKMMEW"
                     /name="hypothetical protein"
     gene            complement(1183..1407)
                     /locus_tag="BB746_RS30640"
                     /old_locus_tag="BB746_29380"
     CDS             complement(1183..1407)
                     /locus_tag="BB746_RS30640"
                     /old_locus_tag="BB746_29380"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_071653266.1"
                     /translation="MSNKDSLERKVTPRKNEPVFPMALRVGIAEDICFLELVDFPEKES
                     GRVFYSIALTKKHAKNLIDGLNKFVESGD"
                     /name="hypothetical protein"
     gene            complement(2271..2693)
                     /locus_tag="BB746_RS29580"
                     /old_locus_tag="BB746_29385"
     CDS             complement(2271..2693)
                     /locus_tag="BB746_RS29580"
                     /old_locus_tag="BB746_29385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_044816494.1"
                     /translation="MARVSISEAARLVKVSRPTIYKMINSGKLSYTSVVKHGKNTKVVD
                     TSELIRVFGSLYGGGDTVKHDVKGDAGATGVNISGLHDLQHKIALLEAENDGLKGAVKA
                     RDEHIDSLRQAMQLLEHKLEPSPQVHSPWWKFWKKS"
                     /name="helix-turn-helix domain-containing protein"
     gene            complement(2693..2884)
                     /locus_tag="BB746_RS29585"
                     /old_locus_tag="BB746_29390"
     CDS             complement(2693..2884)
                     /locus_tag="BB746_RS29585"
                     /old_locus_tag="BB746_29390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_044816495.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSGLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            3300..3413
                     /locus_tag="BB746_RS31545"
                     /old_locus_tag="BB746_29400"
     CDS             3300..3413
                     /locus_tag="BB746_RS31545"
                     /old_locus_tag="BB746_29400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071653267.1"
                     /translation="MHEPPVQSDCCAFSGNYQLESNPERHDEAPLAAATGN"
                     /name="replication initiation protein"
     Typing          3006..3413
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.39"
                     /coverage="99.0"
                     /evalue="1.26e-177"
ORIGIN
        1 cggtttttct ttttcaagaa gagtactagg tcacacttga tgacgtcaag acggttttcg
       61 ctaaagagga acaaccacgc caccttcatt tctttgaaaa aaagaggata attccaaaat
      121 agttgtagtc acctcaatca aagtaaattc atcattaata tcaaataaat accacaaacc
      181 caagtgaggg taaccttcgt cctttatatc aatacattta tctggtttgt taacttgctc
      241 gatcacttcc gctgcatcaa atgagagata tatggcaggt ttggttttcc ctacagggat
      301 tcttttatgt acatccctta ccattccttc ataataatct ttatttgaat gataaataga
      361 cacataatcc tctgaaattt cctccctaag ataaaaacac ttaatagttg tagcgccaaa
      421 ctcatcttta tgatcttcca taacataacg ccataaatat gaattatttg ctctgcccgt
      481 aaatgcatta atacaaggga ttgatttgag gttatttaaa gttgataaca cagtcatcac
      541 cactccatca ttttaaataa tgatttgata gcaatggagt tatcaaggct atcgccaata
      601 tatgccctac ctgtaacctt aaccactcca gaaacttttc taacaaagga aaaaataatc
      661 tcgttatttg ttttcactat taaatttagc gtgcctttgc ttttcttagt ttgtttatat
      721 ataagcccaa aacactctga ttttttatca aagtaaatct gagcgtcttt ttttgcagca
      781 agttcagggg catacctaat caactgaaca atagcctgca aagatggttc taggtcacca
      841 gtgcagaact cgtattctct attataaaca gaaatggcac ttcttatttt tttaaaaaac
      901 aataagaatt cacctgataa ttctaatgat tcgtaatgtt ttaaaattga ctcataaccg
      961 tcaccagagc aatctaatgt tttaacatca tcattccaag actcccaaac agaattctca
     1021 acaacaacaa atgctcgacc caaaacttta aacaaatccg gatctcttaa atcatttagc
     1081 tctaacttat tataatcaga aacatcataa cgaacaccga gatcaatgct atcattagta
     1141 atataataat cttcactatc gcagtggtta atgtatttca tactaatcac ctgactcaac
     1201 gaatttattc aatccatcga taaggttctt tgcatgtttt ttggttagag ctatggaata
     1261 aaaaaccctt cctgattctt tttcaggaaa gtccactaac tctaaaaaac aaatatcttc
     1321 agctatccca actcttagag ccatcgggaa tacaggttca ttttttcttg gtgttacttt
     1381 tctttctaaa gaatctttat tgctcattat aataccccga tagaaataaa tttaagttta
     1441 gaacataaaa aataatacca taaaacaaca tctttcatcc acaatgctca tttaacatta
     1501 cattggtcac tttatggaat tttgtggcca tgatttaaca taacaccaaa attgtacgca
     1561 ccgctaaaac ggcctcaggg cgtttctgac gggaaaccgg taaaataggc aacaaaccac
     1621 ccgaaaaccc gccagaaacg cgcaggctct gtttttacgg catgcatgag tatgcacgca
     1681 agtgcatagc gcgaaaattc acgccattca gccagggtaa gtcctgtttc cggcgttctt
     1741 cccatccgaa aacggtgaac ggggacgcaa tttattgcgt ggccgtgaag cgttgccggc
     1801 gcagccggaa aaccggtttt cagcacgttc aggaatcggg ttcgtcgacg gccggcaatc
     1861 acgttatggc aagtcgccgg acgactcacc acacgattca ccggcgactc ttcactagag
     1921 tcgtacccag agtcgtcacg tctaaaaaac aaccaaacgg ggagtcgggt ctagagtcgg
     1981 gtcgttgtta acttattgtt tttatagtcc tgagtcgtta ccgactctat gacgactcgc
     2041 cggggactct atgacgagtc gtcatagagt cggatctgta taaataaaat taaaaaaacg
     2101 aaatttatag aacgtaaact actgatataa aatacaaatc tgcaaaattt taattttgcg
     2161 tggggtgtgg atatttttag tggtgaggag cgttcagaga tctggcgatt tttgggaagg
     2221 ttcaggaact ccccggaatg gccggagagg aaaactgaag catgacgggg tcaggatttc
     2281 ttccagaatt tccaccacgg agaatgaacc tgtggagagg gttcgagctt gtgttccaga
     2341 agctgcatag cctggcgaag agaatcgata tgttcatcac gagctttaac agccccttta
     2401 agaccatcgt tttcagcttc aagcaaagca attttatgct gtaaatcatg taaaccagag
     2461 atgttaaccc ctgtagcgcc tgcgtcacct tttacatcat gttttacagt gtcgccccca
     2521 ccataaagcg agccaaaaac cctaataagc tctgatgtat caacaacttt agtatttttc
     2581 ccatgcttta caacagaggt gtaacttagt ttcccactgt taatcatctt gtaaattgtg
     2641 gggcgactaa ccttaacaag ccgagccgct tcactaatag acactctggc catcagtttc
     2701 catcctgtaa ttcatccagt cccgaagaca gtgtacggaa aagatgctcc gcatcatcgt
     2761 ggagtttctc acaaaggtcg gcctctacat caagatcaag ctcgttaagc ttctccagca
     2821 ggagcagaga ctgattctgg atgaatttag ccatgttcag cgctgttttc tgttgtttcg
     2881 tcataagagg cctcagagcg tcagtgctca gtgtagggat gttctctttt ccgcttcctc
     2941 gctcactcag tcgctacgct cctgccgttc ggctgcggcg agcggcagga gcatgcgtat
     3001 aaaagctcga gaaaaccgag cgatcgcgtg atggggagaa ggagaggccg cacagcggcc
     3061 gtttttccat aggctccgcc cccctgacaa gcatcacgaa atctgacgct caaatcagtg
     3121 gtggcgaaac ccgacaggac tataaagata ccaggcgttt ccccctggtg gctccctcgt
     3181 gcgctctcct gttcctgcct ttcggtttac cggtgtcatt ccgctgttat ggccgcgttt
     3241 atctcattcc acgcctgaca ctcagttccg ggtaggcagt tcgctccaag ctggactgta
     3301 tgcacgaacc ccccgttcag tccgactgct gcgccttttc cggtaactat caacttgagt
     3361 ccaacccgga aagacacgac gaagcgccac tggcagcagc cactggtaac tgatttagag
     3421 gagttagtct tgaagttatg tgccagttaa ggctaaactg aaagaacgat tttggttact
     3481 gcgctcctct aactagccag ttaccttggt tcatagagcc gcaaactctt agaacctaag
     3541 aaaaaccgcc ccgcaaagg
//
