LOCUS       NZ_CP018317             4249 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Klebsiella pneumoniae strain Kp_Goe_822579 plasmid pKp_Goe_579-5,
            complete sequence.
ACCESSION   NZ_CP018317
VERSION     NZ_CP018317.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05412444
            Assembly: GCF_001885255.2
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 4249)
  AUTHORS   Bohne,W., Bunk,B., Overmann,J., Gross,U. and Zautner,A.E.
  TITLE     A nosocomial outbreak of oxa48-expressing Klebsialla pneumoniae in
            Lower Saxony
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4249)
  AUTHORS   Bohne,W., Bunk,B., Overmann,J., Gross,U. and Zautner,A.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-DEC-2016) Department for Medical Microbiology,
            University Medical Center Goettingen, Kreuzbergring 57, Goettingen,
            Niedersachsen 37075, Germany
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2016
            Assembly Method                   :: SMRT Analysis Software v. 2.3.0
            Genome Coverage                   :: 112.0x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/05/2024 02:08:06
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,857
            CDSs (total)                      :: 5,733
            Genes (coding)                    :: 5,599
            CDSs (with protein)               :: 5,599
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 88
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 134
            CDSs (without protein)            :: 134
            Pseudo Genes (ambiguous residues) :: 0 of 134
            Pseudo Genes (frameshifted)       :: 53 of 134
            Pseudo Genes (incomplete)         :: 80 of 134
            Pseudo Genes (internal stop)      :: 19 of 134
            Pseudo Genes (multiple problems)  :: 15 of 134
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP018317.1.
            Bacteria and source DNA available from Leibniz Institute
            DSMZ-German Collection of Microorganisms and Cell Cultures,
            Inhoffenstrasze 7B, D-38124 Braunschweig, Germany.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            This genome has a base modification file available.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4249
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="Kp_Goe_822579"
                     /isolation_source="nose"
                     /host="Homo sapiens"
                     /culture_collection="DSM:103701"
                     /db_xref="taxon:573"
                     /plasmid="pKp_Goe_579-5"
                     /geo_loc_name="Germany: Goettingen"
                     /lat_lon="51.5392 N 9.9116 E"
                     /collection_date="2013-03-12"
                     /collected_by="Andreas Erich Zautner"
                     /genotype="ST147"
     gene            38..151
                     /locus_tag="BB744_RS33705"
     CDS             38..151
                     /locus_tag="BB744_RS33705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071789001.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPVRHAKAPLAAATGN"
                     /name="replication initiation protein"
     gene            complement(532..1068)
                     /locus_tag="BB744_RS30220"
                     /old_locus_tag="BB744_05672"
     CDS             complement(532..1068)
                     /locus_tag="BB744_RS30220"
                     /old_locus_tag="BB744_05672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002069891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_076978332.1"
                     /translation="MKKVYTAIILIVLLCGGVLSANYIFLQRHMNEVLKEDPRNDGISV
                     WVYYKWFVNSSEINYDLRSVSAENSSLDVSRVMLQFAEKVKDYDFSKVYLSYRGKDKFY
                     LKGEYFKTLGQEYGIQNPVYTLRTIPENVYMLNGERAYSVWEGGLLGVMGKQMEDLSGF
                     SKAWYLDDFIKSMSD"
                     /name="hypothetical protein"
     gene            complement(1357..1593)
                     /locus_tag="BB744_RS30225"
                     /old_locus_tag="BB744_05673"
     CDS             complement(1357..1593)
                     /locus_tag="BB744_RS30225"
                     /old_locus_tag="BB744_05673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001676031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016947370.1"
                     /translation="MKRLINLTPAEKRFLDDAVAAAERASGKKLNQPNRHIVLNRARAQ
                     IESQRQAERQRSAREEERQQAEFTWSRPRAPRR"
                     /name="hypothetical protein"
     gene            2669..3655
                     /locus_tag="BB744_RS30235"
                     /old_locus_tag="BB744_05674"
     CDS             2669..3655
                     /locus_tag="BB744_RS30235"
                     /old_locus_tag="BB744_05674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_016245711.1"
                     /translation="MQNPKLQNLTDYSPSDAPWDAHKSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGETLNRMNMAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPSMFTRDYVKHDRWVELWRECLRVNYDPNVDVRAVKPRKPKDGE
                     SLASATAELVRGAVAETLKYSTKPADMVADPEWFLELTKQTHKRRFVATGGALKDILKL
                     DQETDADMVIGDDIPEGDDDGSRIAFEWKTESKKYRRSPSKDKAESD"
                     /name="protein rep"
     Typing          complement(3757..3935)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="84.066"
                     /coverage="83.0"
                     /evalue="3.53e-41"
     Typing          2..151
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.675"
                     /coverage="87.0"
                     /evalue="3.17e-69"
     Typing          complement(3382..3570)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.947"
                     /coverage="98.0"
                     /evalue="1.39e-59"
     Typing          3912..4248
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="87.826"
                     /coverage="94.0"
                     /evalue="8.33e-106"
ORIGIN
        1 cagttccggg taggcagttc gctccaagct ggactgtatg cacgaacccc ccgttcagtc
       61 cgactgctgc gccttatccg gtaactatcg tcttgagtcc aacccggtaa gacatgcaaa
      121 agcgccactg gcagcagcca ctggtaactg atttagagga gatagtcttg aagtcatgcg
      181 ccagttaagg ctaaactaaa cgaacagttt tggtgactgc gctcctctaa ctagccagtt
      241 acctcggttc aaagagttgc tgctctgaga accttcgaga aaaccgcctt gctgggcggt
      301 tttttcgttt acagagcaag atattacgac gcaacagaaa ggatctcaag aagttccttg
      361 ctgtattgct actatcctag agatctgacc cattaggggc attatcagat gacggccttg
      421 taatccacgg ggagcaggtc acacatctaa agcatctacg agtaaaaaca ccccagtgac
      481 caatgagcga tttgcgtgag ctaatcgtca atgtatactg atcgcttcaa attaatcgct
      541 catgctttta atgaaatcat ctaagtacca agccttagag aaaccactaa gatcttccat
      601 ctgttttccc attacaccca gaagcccacc ctcccaaaca ctataagctc tctctccatt
      661 taacatatac acgttttccg gaattgttct taatgtatat acggggtttt gaataccata
      721 ttcctgccca agagttttaa aatactctcc ttttaagtaa aacttatctt tccctctgta
      781 actaagataa accttactaa aatcataatc tttcactttt tcagcaaatt gcagcatcac
      841 cctactaaca tccagtgaac tattttctgc agaaacagaa cgaaggtcat aattaatctc
      901 ggaagagttt acaaaccact tataataaac ccaaacgcta ataccatcat tccttggatc
      961 ttctttcaga acctcattca tgtgcctttg aagaaaaatg tagttggcag ataaaacacc
     1021 accacataag agtactatta atatgattgc tgtatatact tttttcattt ctataatcca
     1081 tctcaactgc tctaaagttt accctgagat ttttaagcta aggtgccata agttagcaag
     1141 gaattaagca tcgatttacc ataacgtctt cttacgcgca ccgcgaaaac ggcctcaggg
     1201 cgtttctgcg ccttcagcca caaaagagca cgtcttaccc ccagaaaacc gcccggaatc
     1261 gctctggtga gttttacggt ggcgaatgac tatgcaccgg agtgaatacc acgctgtttc
     1321 gccctgaact ccccacaaaa ccgacgaaag tggcaatcag cgacgcggcg cccgcggacg
     1381 cgaccaggta aattccgcct gctgccgctc ctcctcacgc gcagatcgct gccgttctgc
     1441 ctggcgctgc gattcgatct gtgcacgagc cctgttaagg acaatgtgcc tgttgggctg
     1501 attcagcttc ttgcctgacg ctctctcagc ggcggcaaca gcatcgtcga gaaatctttt
     1561 ctcggcaggc gtcaggttta tcagtcgttt catggcgttc tccggtcaga ataactctgc
     1621 acagtctgcc agacacggcg aacctcatga agaacctgca gccgggaacg gccctgagaa
     1681 acggtgaacg ggaacggatt ttaatccggt gccgtgaagc gttggcgggg tatcggggcg
     1741 cagccctgag atatcgtttt ggtgccgaca tcgtgatggc ggtactccaa aaacacatct
     1801 tgtcctattg gttctactcc gatgcaggat agggctaacg ccgcaaagtg acgtcactca
     1861 attactgagt tcggtttccg aactcagttg ggacaagatg tgtttttggt acaccgccat
     1921 cacgatgtcg gtgccaaaac gattcgtcag ggctgcgccc cgacaccctg ccaacacctc
     1981 acgcagtcag attaaaatct gccagcgctc gctgtttccg aaatcgtcaa actctaaatc
     2041 gtggggtccc gctggcttgc cagtgggttc cgatttagtg attgacgaca ttgctgattg
     2101 aaaaattggc tgaggtggtt ggattcacga agtgaggcca accacctgga agacggtttt
     2161 taattgtctg gtaccggata caaccagaac gaatggagtt ggttctgtcg tgatgcgaaa
     2221 aagtatgggt tcgcaaatca cagactaaat agatttaccc aattccattc gagtgaggtt
     2281 gttatgtttt ttgaggttct taatcatgtt gatagtgcgt tgagcgttgc tgtttcgctc
     2341 ctggcgttgt ggcagttttt ggtggcgggt gggcgttgaa tggctggttc gatccgcgcg
     2401 cgatccttgt atttatactt aagggataac tctggcgata aaaaatggca tcaagccttg
     2461 cgtaccaagg cttcggggct tatttgcgtt gtagaaggtt ttggaagtat tctgttggga
     2521 gtggtcgcct taaaagcgac ccccgcaacg acggccatcg ttcgggggtg tgaccacctg
     2581 cagaaattcg attcgaagcg acaaccaaca ggtgatacgg caatgataac acgtcaaatg
     2641 agccatcgcc cagcatggga cggtgtgcat gcaaaaccct aaactccaga acctcacgga
     2701 ttactccccc tcagacgcgc cctgggacgc tcacaaaagc gtttctgacg acgtaggtgg
     2761 gatttacctt ctcgcagccg aatatgagcg ctacggggcg cgtatggctt cctgtggcgg
     2821 tttactgagg tttggttggt ctaccctcaa agaaactgga gaaactcgcc ttaggctacg
     2881 tgaggcgcat ttctgtcgtg tccggcactg tcctgtctgc cagtggaggc gatccctgat
     2941 gtggcaagcc cgtttttatc agtccctgcc gcgtattgtt gcggattatc cagatgcacg
     3001 ctggatgttc ctgaccctca cagtgcgaaa ctgcgcgatc ggggaattgg gtgagacact
     3061 taaccgaatg aacatggcct tccagcgact taaggatcgc aaagagtttc gacctgttca
     3121 gggctggatc cgcaccacgg aagttacacg tggaagtgac ggtagtgcgc acccgcactt
     3181 tcacactctg atgatggttc ctccctcaat gttcacgcga gattacgtta aacatgaccg
     3241 ctgggtagag ctttggcgag agtgtttgcg tgtgaattac gatccgaatg ttgatgttcg
     3301 agcagtaaaa ccccgcaagc ctaaggacgg agaatcattg gcttctgcaa ctgcggaact
     3361 tgtacggggc gcagtggctg aaaccctgaa atattccacg aagccggctg acatggttgc
     3421 tgatcctgaa tggttcctcg aattgactaa gcagacacat aagcgccgat ttgtggctac
     3481 cggtggcgca ctcaaagaca tactgaaact cgatcaggaa actgatgccg atatggtaat
     3541 cggggatgat attcccgaag gcgatgatga tggttcacgc attgcttttg agtggaaaac
     3601 cgaatccaaa aagtaccgtc gctcaccgtc aaaagataaa gctgaatcag actgacaggg
     3661 tgtcggggcg cagccctgac cacgacgttt ttgagaggac gccgcttgtc ggcggtactc
     3721 caaaaacaca tcttgtcccg ctttcagttt ctgaatttgc gggttccggg cgcagcgccg
     3781 gaccagtcac gtagcgctag cggagtgtat actggcttaa tatgttagtt gggcgtggtg
     3841 gctcagggaa gtgcttcatg tggcagggga aaaatgcggc tgcggtgcgt aagtgcaaaa
     3901 tgctgatgat ggtgaaatga cgcctcctcg ctcactcggt cgctacgctc ctgccgtgag
     3961 actgcggcgg gcgttacctg ctcacgaatg acgaggtaac gaaatgaagc tgaggtcaag
     4021 aagggcccga aaaaggatgc ggcgctgccg tttttccata ggctccgccc ccctgacaag
     4081 catcacaaaa tctgacgctc aaatcagtgg cggcgaaacc cgacaggact taaagatccc
     4141 aggcgtttcc ccctggtggc tccctcgtgc gcttctgttc ctgcctttcg gtttaccggt
     4201 gtcattccgc tgttatggcc agcgatttat ctcttccacg ctgacactt
//
