LOCUS       NZ_CP016582             2094 bp    DNA     circular CON 21-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            SH14-009 plasmid pSH14-009_2, complete sequence.
ACCESSION   NZ_CP016582
VERSION     NZ_CP016582.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04334653
            Sequence Read Archive: SRR3028762
            Assembly: GCF_001692655.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Complete Genome Sequences of 17 Canadian Isolates of Salmonella
            enterica subsp. enterica Serovar Heidelberg from Human, Animal and
            Food Sources
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2094)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2016) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: MIRA v. 4.9.3
            Assembly Name                     :: SH14-009
            Long Assembly Name :: Salmonella Heidelberg strain SH14-009
            Genome Coverage                   :: 61x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_001692655.1-RS_2024_03_21
            Annotation Date                   :: 03/21/2024 15:11:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,788
            CDSs (total)                      :: 4,666
            Genes (coding)                    :: 4,555
            CDSs (with protein)               :: 4,555
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 111
            CDSs (without protein)            :: 111
            Pseudo Genes (ambiguous residues) :: 0 of 111
            Pseudo Genes (frameshifted)       :: 44 of 111
            Pseudo Genes (incomplete)         :: 76 of 111
            Pseudo Genes (internal stop)      :: 26 of 111
            Pseudo Genes (multiple problems)  :: 29 of 111
            Pseudo Genes (short protein)      :: 1 of 111
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP016582.1.
            Source DNA available from Dr. Sadjia Bekal, Laboratoire de Sante
            Publique du Quebec, 20045, chemin Sainte-Marie,
            Sainte-Anne-de-Bellevue, Quebec, Canada, H9X 3R5.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="SH14-009"
                     /serovar="Heidelberg"
                     /isolation_source="human"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pSH14-009_2"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2014-08"
                     /collected_by="hospital"
     gene            85..1074
                     /locus_tag="A6W14_RS22950"
                     /old_locus_tag="A6W14_23715"
     CDS             85..1074
                     /locus_tag="A6W14_RS22950"
                     /old_locus_tag="A6W14_23715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_053216289.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEILNRMNAAFQRLKDRKEFRPVQGWIRTTEVTRSS
                     DGSAHPHFHTLMMVPPSMLSGDGYVKHARWVELWRECLRVSYDPNVDVRAVKPRKPKDG
                     ESLAGATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMLIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESD"
                     /name="protein rep"
     Typing          1078..1158
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.341"
                     /coverage="89.0"
                     /evalue="5.64e-30"
     Typing          complement(801..992)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.891"
                     /coverage="100.0"
                     /evalue="2.88e-86"
ORIGIN
        1 ttcgaattgg tgatacggct aacacaggtg atatggcaat gataacacgt cagatgagcc
       61 atcgcccaca atcgggtggt gtgcatgaaa aatcctgaac tccagaacct cacggactat
      121 tccccctcag atgcgccctg ggacgctcac agaagcgttt ctgacgacgt gggagggatt
      181 tacctgcttg cggccgaata tgagcgctac ggggcgcgta tggccctctg tggcggttta
      241 ttgcgtttcg ggtggtctac cctcaaggaa accggagaaa cgcgtctgag gctgcgtgag
      301 gcgcatttct gccgtgtccg gcactgtcct gtctgccagt ggaggcgctc cctgatgtgg
      361 caagcccgtt tctaccagtc cctgccgcgt atcgtggcgg attaccctga tgcccgctgg
      421 atgttcctga ccctgaccgt gcgcaactgt gcgatcgggg agctgggcga gatactgaac
      481 cggatgaatg cagctttcca gcgactgaag gatcgcaagg agttccggcc tgtgcagggc
      541 tggatacgta ccacggaagt cacccgcagc agtgacggca gcgcacatcc ccacttccac
      601 accctgatga tggtgccgcc ctcaatgcta tctggtgacg gttacgtaaa acatgctcgc
      661 tgggttgaac tctggcggga gtgcctgcgg gtcagttacg acccgaatgt tgatgtccgg
      721 gcagtaaaac cccgtaagcc aaaggatggc gaatcgctgg ccggtgctac tgccgaactg
      781 gtgcgcggtg cggtggccga aaccctgaaa tattccacga agccggctga catggtggcc
      841 gatcctgaat ggttcctcga actgacccgc cagacgcaca agcgccgctt tgtggcgacc
      901 ggcggtgcac tcaaagacgt actgaagctc gatcaggaaa ccgatgccga catgttgatc
      961 ggggatgata tttccgaggg tgacgatgac ggttcacgca tcgcgttcga gtggaaaacc
     1021 gaggtcagaa agtaccgtcg ctcaccgacg aaagataaaa ctgaatcaga ctagcagggt
     1081 gtcggggtgc agccctgacc agatggcaat tgtgatagcg tcgcgtgtga cggtattaca
     1141 attgcacatc ctgtcccgaa aattccctcc gtttctcggt ttttttgagc gtcgcagacc
     1201 gcacgacaaa cgaaacgaag tgaagtttgt ataagtgcgc acttcgtgag attccctgac
     1261 tgccagtttg tcgattgcgc ggaacggctg cggcacgaaa acggcaaaat gatttactcg
     1321 ccgtttgtgt gggttgtttt gtggggtgtc aatggggttg tggtcttttt tgtgggttaa
     1381 agtgtgggtg attgtgtggg ctgtgtgttt tgagttgtgg gtgattatgt gggtcattgt
     1441 gtgggctgta tgcacggcat ttttttgttc tcctaaaaca caggcacgat aagcggcgta
     1501 cacaaaacgg ggcgtttcgc tccgtcgctt gtgccaaagg agacacccct ttgcaaccct
     1561 gtgcggttct acgaacctgg tcaggactgc gccccgacac cccgccaacg cctcacggaa
     1621 cgcgaaaaaa ttccgcgtac cgttcaccgt tccctgattc gtcaaacaga aaatcgcggg
     1681 ggcccgcgcc tccggcgtgg gttccgattt tgtgattgac gacggcacgg gaaaaacact
     1741 ggggatggtg gttggtgtca cgcagtgagg ccaaccacct gcaagacggt tttttttgtt
     1801 gttcacaaaa tcggggtgaa agtctgtgga tgagatgggt gtaagtgggt ggggttgggt
     1861 gttttgggtt actgaaaatc ccgctcaaaa ttcaagcgaa tctcgcgcgc gatccttgta
     1921 tttatactta agggataact ctgggattca aattggcctc cagcccttgt cccgcaaggc
     1981 ttgagggcac atttgctccg aaatgggttt agaagtattc tgtcggaagt ggtcgcgtta
     2041 aaagcgaccc ccgcaacgac gggcatcgtt cgggggcgtg accacctgta gaga
//
