LOCUS       NZ_CP016566             2246 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            AMR588-04-00318 plasmid pAMR588-04-00318_2, complete sequence.
ACCESSION   NZ_CP016566
VERSION     NZ_CP016566.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05263514
            Sequence Read Archive: SRR3028751, SRR3711296
            Assembly: GCF_001692595.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2246)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Complete Genome Sequences of 17 Canadian Isolates of Salmonella
            enterica subsp. enterica Serovar Heidelberg from Human, Animal and
            Food Sources
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2246)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-JUL-2016) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: MIRA v. 4.9.3
            Assembly Name                     :: SHAMR588-04-00318
            Long Assembly Name :: Salmonella Heidelberg strain AMR588-04-00318
            Genome Coverage                   :: 127x
            Sequencing Technology             :: Illumina HiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/04/2024 12:45:38
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,776
            CDSs (total)                      :: 4,654
            Genes (coding)                    :: 4,539
            CDSs (with protein)               :: 4,539
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 115
            CDSs (without protein)            :: 115
            Pseudo Genes (ambiguous residues) :: 0 of 115
            Pseudo Genes (frameshifted)       :: 48 of 115
            Pseudo Genes (incomplete)         :: 76 of 115
            Pseudo Genes (internal stop)      :: 26 of 115
            Pseudo Genes (multiple problems)  :: 29 of 115
            Pseudo Genes (short protein)      :: 1 of 115
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP016566.1.
            Source DNA available from Roger P. Johnson, Research Scientist and
            Chief of Reference Laboratiries, National Microbiology Laboratory
            at Guelph.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2246
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="AMR588-04-00318"
                     /serovar="Heidelberg"
                     /isolation_source="Chicken feces"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pAMR588-04-00318_2"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2013-09-09"
                     /collected_by="CIPARS"
                     /serogroup="B"
     gene            1..990
                     /locus_tag="BAT62_RS22950"
                     /old_locus_tag="BAT62_23690"
     CDS             1..990
                     /locus_tag="BAT62_RS22950"
                     /old_locus_tag="BAT62_23690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_065664479.1"
                     /translation="MKNPELQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MASCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMLLTLTVRNCAIGELGETLNRMNAAFQRLKDRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHECWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDVSEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     gene            1737..1940
                     /locus_tag="BAT62_RS22955"
                     /old_locus_tag="BAT62_23695"
     CDS             1737..1940
                     /locus_tag="BAT62_RS22955"
                     /old_locus_tag="BAT62_23695"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_065696617.1"
                     /translation="MDMFLAHEIKFAVMRKRKHGCENNKPEIYKNLLEVRVFFEVLERI
                     DAVLSVAIPLLVLLRFLVVKRR"
                     /name="hypothetical protein"
     Typing          993..1074
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.386"
                     /coverage="90.0"
                     /evalue="1.57e-30"
     Typing          complement(717..908)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.891"
                     /coverage="100.0"
                     /evalue="2.88e-86"
ORIGIN
        1 atgaaaaatc ctgaactcca gaacctcacg gactattccc cctcagatgc gccctgggac
       61 gctcacagaa gcgtttctga cgatgtggga gggatttacc tgcttgcggc cgaatatgag
      121 cgctacgggg cgcgtatggc ctcctgtggc ggtttactgc ggttcgggtg gtctaccctc
      181 aaggaaaccg gagaaacgcg tctgaggctg cgtgaggcgc atttctgccg tgttcggcac
      241 tgtcctgtct gccagtggag gcgctccctg atgtggcaag cccgtttcta ccagtccctg
      301 ccgcgtatcg tggcggatta tcctgatgcc cgctggatgc tcctgaccct gaccgtgcgc
      361 aactgtgcga tcggggagtt gggcgagacg ctgaaccgga tgaacgcagc tttccagcga
      421 ctgaaggatc gcaaagagtt ccgacctgtg cagggctgga tacgtaccac tgaagtcacc
      481 cgcggcagtg atggtagcgc acacccgcac ttccacaccc tgatgatggt gccgcctggc
      541 atgctaaatg ggaaaagtta cgtcaggcat gaatgctggg ttgagttgtg gcgggagtgt
      601 ctgcgggtcg attatgaccc gaatgttgat gttcgggcag tgaaacctcg taagccgaag
      661 ggcggcgaat cgctggcctg cgcgaccgcc gaactggtgc gcggcgcggt ggccgaaacc
      721 ctgaaatatt ccacgaagcc ggctgacatg gtggccgatc ctgaatggtt cctcgaactg
      781 acccgccaga cacacaagcg ccgctttgtg gcgaccggcg gcgcactcaa agacgtactg
      841 aagctcgatc aggaaaccga cgccgatatg gtgatcgggg atgatgtttc cgagggcgat
      901 gatgacggtt cacgcatcgc gttcgagtgg aaaaccgagg tcagaaagta ccgtcgctca
      961 ccgacgaaag ataaaactga atcaggctag cggggtgtcg gggcgaagcc ctgacctgat
     1021 ggtaattgta atagcgtcgc gtgtgacggt attacaatta cacatcctgt cccgaaaatt
     1081 cccgccgttt ctcggttttt tgagcatcgc agatcgcacg acaaacgaaa cgaagtgaag
     1141 tttgtataag tgcgcacttc gtgggtgttc tgtgccgcca gtttgtcgaa tgcgtggcgg
     1201 agctgcgcga caaaaatggc aaaataattc gctgtccgtt cgccagaatt ttgcacgacc
     1261 gtggtggctg caggagcgca gaacggcaga aaaatgccag cgttccggca aaaaaaatcg
     1321 gaacaagaaa tccctgtgtt ttactccgat gcaggatagg gcaaacgccg caaagtgacg
     1381 tctctgacgc cattccgcaa cgtttgcccg gtgacctaca gtcggttcaa caaacaaaaa
     1441 aaccgctgcg gagtcgggac aagatacatc tttgtattac cgccacacgg tcggtactcc
     1501 aaacatcctg gtcagggctg cgccccgaca cccccgccaa cgcctcacgg tacgcgaaaa
     1561 attccgcgta cccctcaccg ttcccgaact cgtcaaacag aaaatcgtgg ggtcccgcgc
     1621 ctctggcgtg ggttccgatt ttgtgattga cgacggcacg ggaaaaacac tggggatggt
     1681 ggttggtgtc acggagtgcc gccaaccacc tgcgaggcgg tttgaaagat ctgcggatgg
     1741 atatgttttt agcgcatgaa attaaattcg cagtaatgcg aaaacgaaaa catgggtgcg
     1801 aaaataacaa accagagatt tataaaaact tgttggaggt gagggtgttt tttgaggttc
     1861 ttgaacgcat tgatgcggtg cttagcgttg cgatcccgct tctggtgtta ttgcgtttct
     1921 tggttgtgaa aaggcgctga tttttgcgtt tattttttgc tcaaatctcg cgcgcgatcc
     1981 ttgtatttat acttaaggga taactctggg attcaaattc gcctccagcc cttgtgccgc
     2041 aaggcctgag tggggatttg tcggaaaatg gttttggagt tattctgtcg ggagtggtcg
     2101 cattaaaagc gacccccgca acgagtggca tcgttcgggg gtgtgaccac ctgtaggaat
     2161 tcgaattggt gatacgacta acacaacagg tgatatggca atgataacac gtcaaatgag
     2221 ccatcgccca cagttgggtg gtgtgc
//
