LOCUS       NZ_CP016532             4245 bp    DNA     circular CON 27-OCT-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            SA01AB09084001 plasmid pSA01AB09084001_4, complete sequence.
ACCESSION   NZ_CP016532
VERSION     NZ_CP016532.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05263504
            Sequence Read Archive: SRR3707415
            Assembly: GCF_001690095.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Complete Genome Sequences of 17 Canadian Isolates of Salmonella
            enterica subsp. enterica Serovar Heidelberg from Human, Animal and
            Food Sources
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2016) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: MIRA v. 4.9.3
            Assembly Name                     :: SHSA01AB09084001
            Long Assembly Name :: Salmonella Heidelberg strain SA01AB09084001
            Genome Coverage                   :: 61x
            Sequencing Technology             :: PacBio; Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/27/2023 03:52:14
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,777
            CDSs (total)                      :: 4,655
            Genes (coding)                    :: 4,539
            CDSs (with protein)               :: 4,539
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 116
            CDSs (without protein)            :: 116
            Pseudo Genes (ambiguous residues) :: 0 of 116
            Pseudo Genes (frameshifted)       :: 47 of 116
            Pseudo Genes (incomplete)         :: 78 of 116
            Pseudo Genes (internal stop)      :: 27 of 116
            Pseudo Genes (multiple problems)  :: 30 of 116
            Pseudo Genes (short protein)      :: 1 of 116
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP016532.1.
            Source DNA available from Roger P. Johnson, Research Scientist and
            Chief of Reference Laboratiries, National Microbiology Laboratory
            at Guelph.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="SA01AB09084001"
                     /serovar="Heidelberg"
                     /isolation_source="Chicken Cecal Content"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pSA01AB09084001_4"
                     /geo_loc_name="Canada"
                     /collection_date="2009"
                     /collected_by="CIPARS"
                     /serogroup="B"
     gene            <556..738
                     /locus_tag="BAT52_RS26485"
                     /pseudo=""
     CDS             <556..738
                     /locus_tag="BAT52_RS26485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001441803.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            888..1211
                     /locus_tag="BAT52_RS23155"
                     /old_locus_tag="BAT52_23645"
     CDS             888..1211
                     /locus_tag="BAT52_RS23155"
                     /old_locus_tag="BAT52_23645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001347450.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSL
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            1420..>1854
                     /locus_tag="BAT52_RS26415"
                     /pseudo=""
     CDS             1420..>1854
                     /locus_tag="BAT52_RS26415"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            1889..2374
                     /locus_tag="BAT52_RS25975"
     CDS             1889..2374
                     /locus_tag="BAT52_RS25975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_023139312.1"
                     /translation="MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMVRMVSQTWLTIVLVSALLTASGASILWWQGQQIL
                     DNYTTIREQKRTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            2378..2593
                     /locus_tag="BAT52_RS25980"
     CDS             2378..2593
                     /locus_tag="BAT52_RS25980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_058671277.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLMQRENA
                     ALSERVTGLSRQVQSLSDQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            2722..3240
                     /locus_tag="BAT52_RS23165"
                     /old_locus_tag="BAT52_23655"
     CDS             2722..3240
                     /locus_tag="BAT52_RS23165"
                     /old_locus_tag="BAT52_23655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_011017199.1"
                     /translation="MKCFWACSVSVVLVMSFTVASAENITHTKPLARSDLYLTCKGYQV
                     KGASVINVEKPSYLEGTGEQVEFAIISLGDASDGLKVFFDSWGFSPFGLIESHVMHEHW
                     SLVHVGGRVSVKGEKIDYSFVDNQPQEGGSYKPKTGVFLYGCINSDKRPSWVEKIYTRT
                     GVFRGGIED"
                     /name="hypothetical protein"
     gene            complement(3470..4057)
                     /locus_tag="BAT52_RS23170"
                     /old_locus_tag="BAT52_23660"
     CDS             complement(3470..4057)
                     /locus_tag="BAT52_RS23170"
                     /old_locus_tag="BAT52_23660"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_011017200.1"
                     /translation="MIRNIFFASAIVVAISGCTAMDKLAGMGVVSQQTSTFDNSTVIDV
                     SPNSLYDPNSTWGTQLQLGAIWSSSQPDQVGLILSYNSNVSNGSSAYLGFIGIDINIDG
                     KISSYKAQQLTNLSNSGYNTVSKTIYTSSKNTVVIPYEVLEKMVSAKNCRLRIHTTEGN
                     QDIDFSAASIPGGKATAIVSIKEFMTKVAKVK"
                     /name="hypothetical protein"
     Typing          602..774
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="94.828"
                     /coverage="100.0"
                     /evalue="9.34e-71"
     Typing          complement(132..677)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.078"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          1202..2685
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.313"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 tcgaaggttc tcagagctac caactctttg aaccgaggta actggcttgg aggagcgcag
       61 tcaccaaaac ttgtcctttc agtttagcct taaccggcgc ataacttcaa gactaactcc
      121 tctaaatcag ttatcagtgg ctgctgccag tggcgctttt gcatgtcttt ccgggttgga
      181 ctcaagatga tagttaccgg acaaggcgca gcggtcggac tgaacggggg gttcgtgcat
      241 acagtccagc ttggagcgaa ctgcctaccc ggaactgagt gtcaggcgtg gaatgagata
      301 aacgcggcca taacagcgga atgacaccgg taaaccgaaa ggcaggaaca ggagagcgca
      361 cgagggagcc accaggggga aacgcctggt atctttaagt cctgtcgggt ttcgccacca
      421 ctgatttgag cgtcagattt cgtgatgctt gtcagggggg cggagcctat ggaaaaacgg
      481 cttcgccgcg gccttctcat ttccctgtta agttccttct tggcatttac caggaaactt
      541 ccgccctatt cgtaagcccg caccgctcgc cgcagccgaa cgaccgagcg cagcgagtca
      601 gtgagcgagg aagcggaata tatcctgtct catatattct gcttacgctc cgctgctgca
      661 tttttctcct gccacatgaa gcgcttcact gattcccgca cccgtgccaa catagtaagc
      721 cagtatacac tccgctagcg ctacgtgact ggttcagggc tgcgccccga aacccgctaa
      781 aaccactgac gcgcctgcgg cttgtccaac accgcgccga ccgggaaaag atttcccgcc
      841 cgtcccggcg ttatcaggag gccggattgg cagacaaacg cagcaaaatg ctcacgatgt
      901 gggtgaccga agatgagcac cgccgtctgc tggagcgctg cgacggtaaa cagcttgcag
      961 cctggatgcg ccagacgtgc ctggacgaga aacccgcccg cgccggcaag cttccctcgc
     1021 tctcgccggc gctgcttcgt cagcttgccg gcatggggaa caacctcaac cagattgccc
     1081 ggcaggttaa cgccggtggt ggcagcgggc acgaccgcgt gcaggtcgtc gccgcgctga
     1141 tggccatcga tgccggactc gagcggctgc ggcatgccgt gctggaaaag ggtgcagacg
     1201 atgatcgtta agtttcaccc gcgagggcgc ggcggtggcg ccggtccggt ggattatctg
     1261 ctggggaaag accgacagcg cgacggcgcc accgttctgc aggggaagcc ggaagaagtc
     1321 agggagctta tcgacgcctc gccctacgca aaaaagtaca catccggcgt cctgtccttt
     1381 gccgaaaagg atttaccgcc cgggcagcgc gaaaagctga tggcgagctt tgaacgggtt
     1441 ctgatgcccg gactcgataa agaccagtac agcgtgttgt gggttgagca ccaggataag
     1501 gggcggctgg agctgaactt cctgatcccg aacacggagc tgctgaccgg caggcgtctc
     1561 cagccgtatt acgaccgcgc cgaccgtccg cgcattgatg cctggcagac catcgtgaac
     1621 ggcaggctgg ggctgcatga cccgaacgcg cctgaaaacc ggcgggcgct ggtcacgccg
     1681 tccgcgctgc cggaaacgaa gcaggaagcc gctcaggcaa ttacacgggg tttactggcc
     1741 ttagcctcgt ccggggagct gaaaacccgc caggacgtca ctgaggcgct ggaaagcgca
     1801 ggttttgagg tggtacgcac cacaaaaagc agcatcagca ttgccgaccc ggacgggggg
     1861 cgaaacatcc gactgaaggg agccatctat gaacagtctt ttaacgctgg caaaggactt
     1921 agagcagaaa tcgaaagcgc agcagcagag taccggcgag atgctgaaag ccgcattcag
     1981 cgagcacgag aagtctgtca gagcggaact gagcgaaagc gagaagagaa tcagcgccgc
     2041 catcctcgac cacgaccgga agctgtcctc agccatgagc cagcgcacga aaggcatggt
     2101 gcgtatggtc agccagacgt ggctgaccat cgtcctggtg tctgcactgc tgacagcatc
     2161 gggcgcaagc attctgtggt ggcaggggca gcagatactc gacaattaca cgactatccg
     2221 ggagcagaag cgcacgcagg ccatgctgtc cgagaggaac agcggcgtgc agctctcgac
     2281 ctgcggagag cagagacgcc gctgcgtgag ggtgaacccg gaagcgggac ggttcggaga
     2341 ggattcgagc tggatgatac tggcggggaa atagcacatg acggagctgg aaaaacagtt
     2401 gctgagcgca ttagagcagc tacagcagga ctactcgaaa aggctggacg agtgggagaa
     2461 cgccttcgcg gaatggcgga cgatgtctgg tcttatgcaa cgggagaacg cggcgctgag
     2521 cgagcgcgtc acgggcttga gcaggcaggt gcagagtttg agcgatcagc tgcgccggtt
     2581 gtcgaaaggc tgaactcgat tgaagcacac aggcagcagg agcgggcggc gcagcatcag
     2641 aaaacgctgg agctggaacg atcgcagcgg cagaaaggtt ttgagcttgg aatgtagtta
     2701 atcaatgaaa agggatgcgt tatgaagtgt ttctgggctt gctcagtctc agtagttttg
     2761 gttatgtcat ttacagtcgc ttctgcggag aacattacac acacaaaacc gttagccagg
     2821 agcgacttat atcttacctg taaaggttat caggtgaagg gggcgtctgt aattaacgtc
     2881 gagaaacctt cttaccttga aggtacaggt gagcaggttg agtttgcaat catttctctc
     2941 ggtgatgcat ctgatggact caaggttttt tttgattcat ggggtttttc tccttttgga
     3001 ttgattgaaa gtcatgtaat gcatgagcac tggtctttag ttcatgttgg ggggcgtgtt
     3061 tcagtcaagg gtgaaaagat tgattattca tttgtagata accagccaca ggagggtggg
     3121 agctataaac ccaaaacagg tgtgttcctg tatggctgca ttaactctga taaaaggcca
     3181 tcttgggtcg aaaaaatcta cacaagaaca ggcgtgtttc gagggggcat agaagactaa
     3241 aatactgcgt acagcatgaa aattcattga acagagtgtt agttcatttt cgtgcatggc
     3301 tatgcataca cgcaaaactt atcagcgcga ttccgggcgg ttttcggtga gaagacgggc
     3361 tcttttgtgg ctcaggacgg aaaaacgccc tgagcgcgtc tgagcggtgc gcccaaggga
     3421 tgttatggta aatagtgtga agtgccgcct gtaatggcgg cttagttacc tatttaactt
     3481 ttgccacttt agtcatgaat tctttaatgg aaacaatcgc agtagctttc cccccaggga
     3541 tacttgcagc tgagaaatcg atgtcttgat taccttcagt tgtatgtatg cgaaggcggc
     3601 agtttttagc cgacaccatc ttttctagca cttcatatgg gataacaacg gtatttttgc
     3661 tggatgtgta gatcgttttg gatacagtat tgtatccact gttacttaga ttagttagtt
     3721 gctgtgcttt atagctagat atcttgccat caatatttat atctattcct atgaaaccta
     3781 agtatgcgga acttccatta gatacatttg aattgtagga aaggatcagc cctacttgat
     3841 ctggttggga gctggaccat attgctccta actgaagttg tgttccccaa gtgctgttcg
     3901 ggtcgtatag cgaatttgga gagacatcta tgacagttga gttgtcaaaa gtggatgttt
     3961 gttgagaaac cacacccatt cccgccagtt tatccattgc tgtacagcca gagatggcta
     4021 ctacgatcgc agaagcaaaa aaaatattcc ttatcatttc gttatcctat ttttttcttg
     4081 ttaccagaga gtgaaaaaag catcgtatta ccgaaactat tttgcacgcg attttctttt
     4141 taagaaggat tttgaaagga tacgggcaga tcttcttgag atccttaagc gagcgtcgta
     4201 atctcttgac cacgaaacga aaaaaccgcc ttgcagggcg gtttt
//
