LOCUS       NZ_CP016528             4096 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            09-036813-1A plasmid p09-036813-1A_4, complete sequence.
ACCESSION   NZ_CP016528
VERSION     NZ_CP016528.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05263546
            Sequence Read Archive: SRR3707411
            Assembly: GCF_001690135.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 4096)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2016) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: MIRA v. 4.9.3
            Genome Coverage                   :: 34x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 12:20:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,960
            CDSs (total)                      :: 4,838
            Genes (coding)                    :: 4,714
            CDSs (with protein)               :: 4,714
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 51 of 124
            Pseudo Genes (incomplete)         :: 84 of 124
            Pseudo Genes (internal stop)      :: 25 of 124
            Pseudo Genes (multiple problems)  :: 30 of 124
            Pseudo Genes (short protein)      :: 1 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP016528.1.
            Source DNA available from Roger P. Johnson, Research Scientist and
            Chief of Reference Laboratiries, National Microbiology Laboratory
            at Guelph.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="09-036813-1A"
                     /serovar="Heidelberg"
                     /isolation_source="Equine Body Fluid/Excretion"
                     /host="Equus ferus caballus"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="p09-036813-1A_4"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2009"
                     /collected_by="University of Guelph - Animal Health
                     Laboratory"
                     /serogroup="B"
     gene            complement(95..322)
                     /locus_tag="BAT93_RS24370"
                     /old_locus_tag="BAT93_22970"
     CDS             complement(95..322)
                     /locus_tag="BAT93_RS24370"
                     /old_locus_tag="BAT93_22970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010615788.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_000719360.1"
                     /translation="MKKIFVSVFAAAVALSALTGCTRTSYAIHTNDGRTIVSDGKPTES
                     DSGLLGYKDANGVKQQINKADVKEVSEIPH"
                     /name="YgdI/YgdR family lipoprotein"
     gene            complement(344..577)
                     /locus_tag="BAT93_RS24375"
                     /old_locus_tag="BAT93_22975"
     CDS             complement(344..577)
                     /locus_tag="BAT93_RS24375"
                     /old_locus_tag="BAT93_22975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461706.1"
                     /GO_component="GO:0005886 - plasma membrane [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="WP_001036746.1"
                     /translation="MNKKTLLAAMMVALVTFAAAGCSSNQEIKTTDDRTIVTDGKPKVD
                     SDTGLVSYKDAHTGRTEQINRDKITNMSELDN"
                     /name="YgdI/YgdR family lipoprotein"
     gene            659..928
                     /locus_tag="BAT93_RS26880"
                     /old_locus_tag="BAT93_22980"
     CDS             659..928
                     /locus_tag="BAT93_RS26880"
                     /old_locus_tag="BAT93_22980"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_079839079.1"
                     /translation="MNGQEFRLLLTEHGEKEAVLLFGKKSFVAVPDTQNLYGGCYYLYL
                     EDAHKNELLIELNESDLYPGGAIELQHNGGRKIHCEILKVRWSR"
                     /name="hypothetical protein"
     gene            complement(1165..1323)
                     /locus_tag="BAT93_RS27490"
     CDS             complement(1165..1323)
                     /locus_tag="BAT93_RS27490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_032670878.1"
                     /translation="MHEPPVQSDCCALSGNYRLESNPERHEKSLLAAAISNWRYTRDKL
                     RGLEVWA"
                     /name="hypothetical protein"
     gene            1962..2285
                     /locus_tag="BAT93_RS24380"
                     /old_locus_tag="BAT93_22985"
     CDS             1962..2285
                     /locus_tag="BAT93_RS24380"
                     /old_locus_tag="BAT93_22985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_001555769.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGSSGLDRVQVVAALMAIDAGLERLRHAVLEKGAD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2494..>2928
                     /locus_tag="BAT93_RS27375"
                     /pseudo=""
     CDS             2494..>2928
                     /locus_tag="BAT93_RS27375"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2963..3448
                     /locus_tag="BAT93_RS26890"
     CDS             2963..3448
                     /locus_tag="BAT93_RS26890"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_012782630.1"
                     /translation="MNSLLTLAKDLEQKSKVQQQTTGEMLKAAFSEHEKSVRAELNESE
                     KRISAAIHDHDRMLSSAMSQRTKGMLRMVSQTWLTIVLVSVLLIASSAGILWWQGQQIL
                     DNYTTIREQKSTQAMLSERNSGVQLTTCGEERRRCVRVNPDAGRFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            3452..3661
                     /locus_tag="BAT93_RS26895"
     CDS             3452..3661
                     /locus_tag="BAT93_RS26895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014538403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_001632067.1"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWESAFAEWRTMCGLMQRENA
                     ALSERVTDLSTQVLSLSEQLRRLS"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          1776..1854
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="5.8899999999999995e-34"
     Typing          complement(1212..1700)
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.747"
                     /coverage="94.0"
                     /evalue="7.82e-151"
     Typing          2276..3771
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.998"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtatttggcc cccagcgggg gctttttttg cctgttgttg gggcagataa agaaaagggc
       61 cgcattagcg gcccttttcg gagagagcga tgcctcaatg cggaatttca gagacttctt
      121 taacgtcggc tttattgatc tgctgtttga caccatttgc gtctttatag cccagcaggc
      181 ctgagtctga ttctgtaggc ttgccgtcgc tgacaattgt acgcccgtcg ttggtgtgga
      241 tggcatagct tgtgcgcgtg cagccggtta gggctgaaag cgcaactgcc gctgcgaaca
      301 ctgaaacaaa aatctttttc aaagccagct ccttttatcc gtatcagttg tctagttcac
      361 tcatgttggt aattttgtca cggttgatct gttcggttcg gcctgtatgg gcatctttgt
      421 aggatactaa tcccgtatca ctgtcaactt tgggtttgcc gtctgtaacg atagtgcgat
      481 catctgtggt ttttatttct tggtttgaag aacatccagc agcggcaaag gtcaccaacg
      541 cgaccatcat ggccgccaac agcgtttttt tattcataat aggttccctg cttaaaggta
      601 aagtggatat ggtcactaac catctaagta taggtcgttt tttcatgcga aaagaggatt
      661 gaatggacaa gaatttcgat tattgctgac agagcatgga gaaaaagagg ctgttttact
      721 gttcggaaag aaatcttttg ttgccgtgcc agatacgcag aacctttatg gtgggtgtta
      781 ttacctttat ttagaggatg ctcacaagaa cgagctttta attgagttaa acgaaagtga
      841 tttatacccc ggtggcgcaa tagaacttca acacaacggc ggtcggaaga ttcattgcga
      901 gatactaaaa gtaaggtgga gtcgttaact caagtaatgt ttcctaagta tgttgatagg
      961 caaacatagt ggtagttagt ctctctgagt aaatgatctt cttgtgatcc tgtcgttaca
     1021 gtcgtaatct cttgctctga aaacgaaaaa accacctggg gaggtggttt gatcgaaggt
     1081 taagtcagtt ggggaactgc ttaaccaggt aactgggtat acgagaccgc agaaaccaaa
     1141 actgttcttt cagtgtagcc tctctcaggc ccatacttca agacctctta atttgtctct
     1201 cgtatacctc cagttactaa tggctgctgc cagtagcgat ttttcgtgtc tttccgggtt
     1261 ggactcaaga cgatagttac cggataaggc gcagcagtcg gactgaacgg ggggttcgtg
     1321 catacagtca atcctggagc gaactgcctt cgcggaactg agtgtcaggc gtggaatgag
     1381 aaaccgcggc cataacagcg gaatgacacc ggtaaaccga aaggcaggaa tgcgggggag
     1441 cacgagggag ccatcagggg gaaacgcctg gtatctttaa gccgcatcgg gtttcgccac
     1501 cactgatttg agcgtcagat tctgtgatgc ttgtcagggg ggcggagcct atggaaaacc
     1561 ggcagcggcg catcctttct tcccctcctg cattcacgta tttccccgcc acgtctttat
     1621 ccgtgagtcc gtaccgctcg ccgcagccga acgaccgagc gtagcgagtc agtgagcgag
     1681 gaagcggaat atccaccggg acaggcatca gcctcttacg cacctgagcc tcatctcaca
     1741 gttttcatga ctgactattt catcccgatt cccgtcgtgc caccatagta agccagtata
     1801 cactccgcta gcgctacgtg actggttcag ggctgcgccc cgaaacccgc taaatgccac
     1861 tgacgcgcct gcggcttgcc caacaccgcg ccgaccggga aaagatttcc cgcccgtccc
     1921 ggcgttatca ggaggccgga ttggcagaca aacgcagcaa aatgctcacg atgtgggtaa
     1981 cagaagatga gcaccgccgt ctgctggaac gctgcgacgg taaacagctc gcggcctgga
     2041 tgcggcagac gtgcctggac gagaagcccg cccgggccgg caaacttccc tcgatctcgc
     2101 cggcgctgct tcgtcagctt gccggcatgg ggaacaacct caaccagatt gcccgccagg
     2161 ttaacgccgg tggcagtagc ggtctcgacc gcgtgcaggt cgtcgccgcg ctgatggcca
     2221 tcgatgccgg actcgagcgg ctgcggcatg ccgtactgga aaagggggct gacgatgatc
     2281 gttaagtttc atccccgggg acgcggaggc ggtgccggcc cggttgatta tctgctgggg
     2341 aaagaccgcc agcgcgacgg tgccagcgtt cttcagggga agccggagga agtccgggag
     2401 cttatcgacg cctcgcccta cgccaaaaag tacacctccg gggtgctgtc ctttgccgaa
     2461 caggacttac cgcccgggca gcgtgaaacg ctgatggcga gcttcgagcg ggttctgatg
     2521 cccggactcg ataaagacca gtacagcgtg ctgtgggttg agcaccggga caaggggcgg
     2581 ctggagctga acttcctgat cccgaacacg gagctgctga ccggcaaacg gctccagcca
     2641 tactatgacc gcgccgaccg tcctcgcatt gatgcctggc agaccatcgt gaacggcagt
     2701 ctggggctgc acgacccgaa cgcgccggaa aaccggcggg cactggtcac gccgtccgcg
     2761 ctgccggaaa cgaagcagga agccgctcag gcgattacgc ggggtttact ggccttagcc
     2821 tcgtccgggg agctgaaaac gcgtcaggac gtcactgagg cgctggaaag cgcaggtttt
     2881 gaggtggttc gcaccacaaa aagcagcatc agcattgccg acccggacgg ggggcgaaac
     2941 atccgactga agggagccat ctatgaacag tcttttaacg ctggcgaagg acttagagca
     3001 gaaatcgaaa gtgcagcagc agactaccgg cgagatgctg aaagccgcat tcagcgagca
     3061 cgagaagtct gtcagagcgg aactgaacga aagcgagaag agaatcagcg ccgccatcca
     3121 cgaccacgac cggatgctgt cctcagccat gagccagcgt acgaaaggga tgctgcgcat
     3181 ggtcagccag acgtggctga ccatcgtcct ggtctccgtg ctgctgatag cctcaagtgc
     3241 gggcattcta tggtggcagg ggcagcagat actcgacaat tacacgacca tccgggagca
     3301 gaagagcacg caggccatgc tgtccgagag gaacagcggc gtgcagctca cgacctgcgg
     3361 agaggaacga cgccgctgcg tgagggtgaa cccggacgcg ggacggttcg gagaggattc
     3421 gagctggatg atactggcgg ggaaatagca catgacggaa ctggaaaaac agttgctgag
     3481 cgcattagag cagctacagc aggactactc gaaaaggctg gacgagtggg agagcgcctt
     3541 cgcggaatgg cggacgatgt gtggtcttat gcaacgggag aacgcagcgc tgagcgagcg
     3601 cgtcacggac ttgagcacgc aggtgctgag tttaagcgag cagctgcgcc ggttgtcgta
     3661 aggctgaacg acatcgaggc acaccgggag caggagcgcg cagcgcagca ccagaaagcg
     3721 ctggagctgg aacgatcgca gcgtcagcag gagtatgacg gtccgtcgct gtgataaccg
     3781 gataaaacgg ggctttcatt gaggatctgc gccgaaaccc ggtgccattc acccggctgc
     3841 atggctatgc agtcgggtga gatttatcag gcgcagaatg cacggtttgc ggggtggttt
     3901 actgtcggtt ttgcaggact gacgccgcat tcgcgctgaa cccgtccgga gaggtgcggg
     3961 caagggatgt tatggtaaaa gcatgatgcc tggcgggtac ggaaaaattg tggcgaccga
     4021 gcctgcagac gcaaaaatcc ggcccatact tattcgtctc cttcatcagg aatgcagtac
     4081 tatccagcca ctgcag
//
