LOCUS       NZ_CP016527             3046 bp    DNA     circular CON 26-JAN-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            09-036813-1A plasmid p09-036813-1A_3, complete sequence.
ACCESSION   NZ_CP016527
VERSION     NZ_CP016527.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN05263546
            Sequence Read Archive: SRR3707411
            Assembly: GCF_001690135.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3046)
  AUTHORS   Labbe,G., Ziebell,K., Bekal,S., MacDonald,K., Parmley,J., Agunos,A.,
            Desruisseau,A., Daignault,D., Slavic,D., Hoang,L., Ramsay,D.,
            Pollari,F., Robertson,J., Nash,J.H.E. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2016) Public Health Agency of Canada, National
            Microbiology Laboratory at Guelph, 110 Stone Road West, Guelph,
            Ontario N1G3W4, Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: MIRA v. 4.9.3
            Genome Coverage                   :: 34x
            Sequencing Technology             :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 01/24/2024 12:20:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,960
            CDSs (total)                      :: 4,838
            Genes (coding)                    :: 4,714
            CDSs (with protein)               :: 4,714
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 124
            CDSs (without protein)            :: 124
            Pseudo Genes (ambiguous residues) :: 0 of 124
            Pseudo Genes (frameshifted)       :: 51 of 124
            Pseudo Genes (incomplete)         :: 84 of 124
            Pseudo Genes (internal stop)      :: 25 of 124
            Pseudo Genes (multiple problems)  :: 30 of 124
            Pseudo Genes (short protein)      :: 1 of 124
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP016527.1.
            Source DNA available from Roger P. Johnson, Research Scientist and
            Chief of Reference Laboratiries, National Microbiology Laboratory
            at Guelph.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3046
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="09-036813-1A"
                     /serovar="Heidelberg"
                     /isolation_source="Equine Body Fluid/Excretion"
                     /host="Equus ferus caballus"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="p09-036813-1A_3"
                     /geo_loc_name="Canada: Ontario"
                     /collection_date="2009"
                     /collected_by="University of Guelph - Animal Health
                     Laboratory"
                     /serogroup="B"
     gene            1..396
                     /locus_tag="BAT93_RS24350"
                     /old_locus_tag="BAT93_22950"
     CDS             1..396
                     /locus_tag="BAT93_RS24350"
                     /old_locus_tag="BAT93_22950"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000896281.1"
                     /translation="MAFVSQVDKSRAASSRIGDSSIVVTQSYKASTKAQELSIRLKSLV
                     LSKGGMKIGDYVDVLYDKDSDRWMLRKMDGGLKITGKDDAPTGLIRYTLKDTHARFTED
                     KEHLPIRKSSIEDSLEIEDGQIVFKLD"
                     /name="hypothetical protein"
     gene            408..671
                     /locus_tag="BAT93_RS24355"
                     /old_locus_tag="BAT93_22955"
     CDS             408..671
                     /locus_tag="BAT93_RS24355"
                     /old_locus_tag="BAT93_22955"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA]; GO:0042803 - protein homodimerization
                     activity [Evidence IEA]"
                     /GO_process="GO:0030541 - plasmid partitioning [Evidence
                     IEA]; GO:0051290 - protein heterotetramerization [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_023237785.1"
                     /translation="MISKVLWADKALSDRETIFESNDKVSGLSYAKSEDAKIKRAVSTI
                     KRNNKVGRNDLDERGYVYVLPKRYKILYRLTEEHIFIERVFY"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            1585..1734
                     /locus_tag="BAT93_RS27070"
     CDS             1585..1734
                     /locus_tag="BAT93_RS27070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017880354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_023237787.1"
                     /translation="MPSEHDEQRDVADTQLPGEYDLFDLMAKVTEENLHAPVDSGPPVG
                     REAL"
                     /name="hypothetical protein"
     gene            complement(2537..2812)
                     /locus_tag="BAT93_RS24365"
                     /old_locus_tag="BAT93_22965"
     CDS             complement(2537..2812)
                     /locus_tag="BAT93_RS24365"
                     /old_locus_tag="BAT93_22965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004099076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="WP_023259899.1"
                     /translation="MQFRIESETKKMAKQALEKKGISLSDALRAFLDKLAATEKVMTKE
                     ETWLKEQIEETFSRVEKGEIRYYSEDEADERMNSFISKIEHQHETA"
                     /name="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
     Typing          1379..1548
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="88.304"
                     /coverage="98.0"
                     /evalue="9.61e-51"
     Typing          complement(990..1412)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.34"
                     /coverage="80.0"
                     /evalue="0.0"
ORIGIN
        1 atggcatttg ttagtcaggt tgataagtct agggctgctt cgagcaggat tggtgattcg
       61 tctatagtgg tcactcaatc atacaaggct tcaactaagg ctcaggagct atccattaga
      121 ttaaaatcgt tagtgttatc taagggaggt atgaaaattg gtgattacgt tgatgttctt
      181 tatgacaagg atagtgatcg ctggatgtta aggaagatgg atggaggttt aaaaattact
      241 ggtaaggatg atgcccctac ggggttgatt agatataccc tgaaggatac acatgcgaga
      301 tttaccgagg ataaagagca cctccctatt cgtaaatcct ctattgagga ttcactggag
      361 attgaggatg ggcagattgt atttaagctt gactagcggg aggtttgatg atctctaagg
      421 ttctatgggc agataaggca ttatctgatc gagagactat ctttgagtct aacgataagg
      481 tttctggttt gtcgtatgca aaatcagaag atgcaaaaat taaacgtgct gtttctacga
      541 taaaacgaaa caacaaagta ggcagaaatg acctggatga gcgaggttat gtctatgttc
      601 tacctaaaag atacaagatt ttgtatcggc tgactgagga gcatattttt attgagcgcg
      661 ttttctactg atggtttggc gacctttctt gactacgcgt ctctttagct attaatcttg
      721 ggatgaagaa aaccaccgct accaacggtg gtttcttcgt agtcctttga gctaccaact
      781 cattggactt gtggtaactg gctttcgcgg agcgcagtca ccaaaacttg ttctttcagt
      841 gtagccgtag ttcactgctc acttcaagat atccttgctt accttctttc tacgctccgc
      901 aaatcagtta ttacaggctt ccaccattgt cataatttga gtcaaacaag attggattca
      961 agagtcgagt tgcttgtttg tcgtgggggt cggactgaac ggggggttcg tgcatacagt
     1021 ccagcttgga gcgaactgcc tacccggaac tgagtgtcag gcgtggaatg agacaaacgc
     1081 ggccataaca gcggaatgac accggtaaac cgaatggcag gaacaggaga gcgcacgagg
     1141 gagccatcag ggggaaacgc ctggtatctt tatagtcctg tcgggtttcg ccaccactga
     1201 tttgagtgtc agattctgtg atgcttgtca gggggggcgg agcctatgga aaaacggctc
     1261 cgccgtggcc ttatcgcttc cctgttaagt ttcttcttgg catcttccag gaaatctccg
     1321 ccccgcctgt aagccgatac cgctcgccgc agccgaacga ccgagcgcag cgagttagtg
     1381 agcgaggaag cggaatatct tctgtatcgc atattctgct tacgctctgc tgcagcattt
     1441 ttctcctgcc acataaggcg ctttcctgat tatcgcactc atgccaacat actaagccag
     1501 tatacactcc gctagcgcta cgtgactggt ccggcgctgc gcccggaacc cgctaacaac
     1561 ctctcagcta ctggatatca ccccatgcca tctgaacatg atgaacaacg ggatgttgct
     1621 gatacgcagc ttcccggcga gtatgacctt tttgatttaa tggcgaaggt tactgaagag
     1681 aacctgcacg ccccggtgga ttccgggcca cctgtcggcc gggaagcgtt atagcttttt
     1741 cgttgggaag cgtacgtgta atacggtggt attacatctt atttctttat tttcatgtat
     1801 ttacagttga ttgtaatacc ttgcgtatta ccgtgacaaa tggagtatcc catttttttt
     1861 atgtaattca tgcagttgcg atgaaaatcg cggctgcgtt aggtgtatga ccatttaagg
     1921 gttaaaaaat catcattttg actgggccat ctgcgcaggt taagaggctg atatgacaaa
     1981 aaagcgtcct tcactactcc gttcatgctc gcatgaacgg agtagttttc ctgactacag
     2041 gtaaactaca aaaagactac aaaagctgat gtttaatcat gcctttcaga gggctaacta
     2101 cagataaact acaaatcaac tacagaatta catcactttt acatcattct tacgtcagat
     2161 ctgacctctg aactattcgt acatccgccc ccctcttcct gcacgtgctg aaaatggttt
     2221 ttccggctgt gccggcaaaa tgcctcatgg ctacgcaata aattgcgtcc ccgttcaccg
     2281 ttttcgggta agaagaacat cggaaacagg acttaccccg gctgaatggc gtgaatttcc
     2341 gcgctatgca cttgcgcgca tactcatgca tgacgtgaaa acagaactaa cgtgtttttg
     2401 gctgattttc tgatagtttg ttgtctgttt tacctgtttc ctgtcagaaa cgccctgagg
     2461 ccgttttggc ggtgcgtaca attagggtgt tatggtaaat aagggcataa aaaaagccgc
     2521 cataaggcgg ctttttttat gcggtttcgt gttgatgttc gattttagag atgaaggagt
     2581 tcatgcgttc gtcagcttca tcttctgagt aatagcggat ctctcctttt tctactcttg
     2641 agaatgtctc ttctatctgc tctttcagcc atgtctcttc tttcgtcata accttctccg
     2701 ttgctgctaa cttatcgaga aacgctctta acgcatcgct aagtgaaatg cctttttttt
     2761 caagtgcttg ctttgccatt ttctttgttt cagattcaat tctgaattgc acccttgttt
     2821 ccatagatat agatcccagc gtctattgtg agtacgtttg tgctcacaat agacgctggg
     2881 atccctacag tcaatgcctc ctttcttaga tttatgatta gaaaaagtaa ctttttttct
     2941 tcgggttctg agagaggata aagatcagat aaaaacatgg ttctgtgttg ctaagatttt
     3001 ttgccgatcg tattatgaac atgaaaataa actatcagga ggtttt
//
