LOCUS       NZ_CP013625             3113 bp    DNA     circular CON 06-MAR-2024
DEFINITION  Staphylococcus aureus strain RIVM4294 plasmid pRIVM4294, complete
            sequence.
ACCESSION   NZ_CP013625
VERSION     NZ_CP013625.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04325947
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Bosch,T., Witteveen,S., Haenen,A., Landman,F. and Schouls,L.M.
  TITLE     Next-Generation Sequencing Confirms Presumed Nosocomial Transmission
            of Livestock-Associated Methicillin-Resistant Staphylococcus aureus
            in the Netherlands
  JOURNAL   Appl Environ Microbiol 82 (14), 4081-4089 (2016)
   PUBMED   27129960
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Witteveen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2015) Laboratory for Infectious Diseases &
            Screening, National Institute for Public Health & the Environment
            (RIVM), Antonie van Leeuwenhoeklaan 9, Bilthoven 3721 MA, The
            Netherlands
COMMENT     ##Assembly-Data-START##
            Assembly Method :: CLC Genomics Workbench v. version 8.5.1
            Sequencing Technology        :: 454; Illumina
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider          :: NCBI RefSeq
            Annotation Date              :: 03/06/2024 01:49:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision :: 6.6
            Features Annotated           :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                :: 2
            CDSs (total)                 :: 2
            Genes (coding)               :: 2
            CDSs (with protein)          :: 2
            Genes (RNA)                  :: 0
            tRNAs                        :: 0
            ncRNAs                       :: 0
            Pseudo Genes (total)         :: 0
            CDSs (without protein)       :: 0
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP013625.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="RIVM4294"
                     /isolation_source="unavailable"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pRIVM4294"
                     /geo_loc_name="Netherlands: Bilthoven"
                     /lat_lon="52.13 N 5.210 E"
                     /collection_date="2009-10-09"
                     /collected_by="Dutch National Institute for Public Health
                     and the Environment (RIVM)"
     gene            130..990
                     /locus_tag="AUC53_RS00005"
                     /old_locus_tag="AUC53_00005"
     CDS             130..990
                     /locus_tag="AUC53_RS00005"
                     /old_locus_tag="AUC53_00005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017001149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="WP_078099425.1"
                     /translation="MILKNLNDSIDYIDQNLTKDLNLYDIANFVGLPEQHYRNLFIFLT
                     GIGLSEYIKKRKLYFANKDLLNKESVTSVAIKYGYSIDGFTKSFKDWSGYLPSQIYEEQ
                     VLISYPKLSFAINVKGGIDMKTRIVDLPKINIVGVKKRVRMQYEGVNNEIEELANSITN
                     IQKEEMNNLQNIEPKEIVNVSYDADENFIKEEGYLTHMIGVITTENNISDQLDVINIDE
                     SKWIVFENEGKFPKVLQDTYAKIYSEWLPETEYKLANVPMFSFTKFNDSDSDNAYSEIW
                     VAVNN"
                     /name="AraC family transcriptional regulator"
     gene            1207..2211
                     /locus_tag="AUC53_RS00010"
                     /old_locus_tag="AUC53_00010"
     CDS             1207..2211
                     /locus_tag="AUC53_RS00010"
                     /old_locus_tag="AUC53_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020368559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_078099048.1"
                     /translation="MQDNHTKYIDENQDNKTLKDLTKSGKQRPWREKKIDNVSYADILE
                     ILKIKKAFNVKQCGNVLEFKPTDEGYLKLHKTWFCKSKLCPVCNWRRAMKNSYQAQRVI
                     EEVVKEKPKARWLFLTLSTRNAIDGDTLEKSLKHLTESFRRLFKYKKVSKNLIGFMRST
                     EVTVNKNDGSYNQHMHVLLCVESKYFRGSENYISQNDWINLWQKALQVNYRPVANIKAI
                     KPNQKGDKDIQAAIKETSKYSVKSSDFLTDDDERNQEIVNDLEKGLYRKRMLSYGGLLK
                     QKHKILNLDDAEDGNLINTSDEDKTTDEEEKAHSITAIWNFEKQNYYLKDLKR"
                     /name="protein rep"
     Typing          1208..2211
                     /name="rep_cluster_1017"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="92.949"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggttccgagg ctcaacgtca ataaagcaat tggaataaag caattatttt ttattcgata
       61 attgttatat ataaattatc gagtcatttc tttgattatt gattactata ggattgaaag
      121 gtgatggata tgatattaaa aaatttaaat gattctatag attatataga tcagaattta
      181 acaaaagatt taaatttata tgatatagcg aattttgttg gtttacccga gcaacattat
      241 agaaatttat ttatatttct tactggtatt ggtttatctg agtatataaa aaaaagaaaa
      301 ttgtattttg ctaacaaaga tttattaaat aaagaatcag taacgagtgt agctataaaa
      361 tatggatatt caattgatgg ttttacaaag tcttttaaag attggagtgg gtatttacca
      421 tctcaaatat atgaagaaca agttttaatt tcgtatccga aactttcatt tgctattaat
      481 gttaaaggag gaatagacat gaaaactaga attgtagatt tgccaaaaat taatatagta
      541 ggcgtaaaaa aacgcgttcg tatgcaatac gagggtgtta acaatgaaat tgaagaacta
      601 gcaaatagta ttactaatat acaaaaagaa gaaatgaaca atttacaaaa cattgaacct
      661 aaagaaattg taaatgtttc atatgatgct gatgagaatt ttattaaaga agagggttat
      721 ttaactcata tgattggtgt tataacaaca gaaaataata taagcgatca acttgatgtt
      781 ataaatattg atgaaagtaa atggatagtc tttgaaaatg aaggtaaatt tccaaaagtt
      841 ttgcaagaca catacgctaa aatttattct gaatggttgc cagaaacaga atataaatta
      901 gctaatgtac caatgttttc ttttactaaa tttaatgatt cagatagtga taatgcttat
      961 agtgaaattt gggttgcagt taataattga ttttagatat ttaaggtttt agaaacgagt
     1021 tgaaaacgag tttcttcttg tcttgatact atatagaaat aacgttcttt tttaaaatgt
     1081 tgtttcaagc ttgatgtaac agtgttttga aagattttta gtgtataaaa taaaatttga
     1141 cataaaaaaa ctccagtaat aagattaaag tgtcgagcta aaatcaaata ctggaggtct
     1201 ttttatatgc aagacaatca tacaaaatat atagatgaaa atcaagataa taaaacacta
     1261 aaagacttaa cgaaaagtgg gaaacaacgc ccgtggagag aaaagaaaat cgataatgta
     1321 agttatgcag atatactaga aatcttaaaa attaaaaagg cttttaacgt aaaacaatgt
     1381 ggtaacgtct tagagttcaa gcctactgat gaaggttatt tgaagttaca taagacatgg
     1441 ttttgtaaat caaaattgtg tccagtttgt aattggaggc gtgctatgaa aaatagttat
     1501 caagctcaaa gagtgattga agaagtggtt aaagaaaagc cgaaagcacg ttggttgttt
     1561 cttacactat caacacgaaa tgcgatagat ggagatactt tagaaaaaag tcttaaacat
     1621 ttaactgaat catttagaag attatttaaa tataaaaaag ttagtaaaaa tttaattggt
     1681 tttatgcgtt cgacagaggt tacagttaat aaaaatgacg gtagttataa tcaacatatg
     1741 catgttttat tgtgtgttga aagtaaatat tttagaggtt ctgagaatta catttctcaa
     1801 aatgattgga ttaatttatg gcaaaaagca ttacaagtta attatcggcc agtagcaaat
     1861 attaaagcga tcaaaccaaa tcaaaaaggc gataaagata ttcaagcagc aatcaaagaa
     1921 acctcgaaat attcggttaa atcatctgat tttttaactg atgatgacga aagaaatcag
     1981 gaaatcgtga atgatttaga aaaaggttta taccgaaaac gtatgttgag ttatggtgga
     2041 ttgcttaaac aaaaacataa aattttaaat ttagacgatg ccgaagatgg caatttaatt
     2101 aatacaagtg acgaagataa aacaacagac gaagaagaaa aagcacattc aattactgca
     2161 atttggaatt ttgaaaaaca aaattattac ttaaaagatt tgaaacgtta gcttaaaagc
     2221 tagcgttttt tttatgtatt tttgcccctg caggaactat agcgttcaac cggcatggtt
     2281 gaccagtttt accatgaaaa ttttaatttg catgtaaatg ggcagtgtct gaaaaattcg
     2341 ccactggtta tgtacaaaaa atgagataaa caatttaact ttttaagtta tataaatttt
     2401 agggagttcc aatcaaatta gaaaaatata tataaaagtt atatcgtttt tctggcttat
     2461 gtttaaaaag tacaagtgat tgtatttaaa atgactttag caacttaagt aatatgtctt
     2521 ttgaatacaa gttaaatgtc agaaagatgt acccttattt tgctcatatt tgcgttttaa
     2581 gaaacatata taaatataca ggtataaaaa tatataaata tagagtttgc tctaaatacc
     2641 cccttaaaat tcaaaataaa ggcatttaaa aattaagaaa ataaaaaagc tactagcaaa
     2701 aaactagtag cttaaatctt agttaaattt ctatgtagta ttaattttta tatctacgct
     2761 acaacgtcga ttctagttcg tgcagtatta atttttatat ctgcgctaca acgccgattc
     2821 cttaaaacta agataaaaat tgacgaaggt cgattatggt tttttacgcg ttctttttag
     2881 aacgcataag tgcgccctta cgggatttaa ctagattata acgacgaaaa atagacctgt
     2941 aaagcaataa cagttgggtc tactttgtct actgggcaga caagaaaaga acacgcattt
     3001 atgccgagaa aatttattga tgttgagaag aacccttaac taaacttgca gacgaatgtc
     3061 ggcatagcgt gagctattaa gccgaccatt cgacaagttt tgggattgtt aag
//
