LOCUS       NZ_CP013620             1442 bp    DNA     circular CON 03-MAR-2024
DEFINITION  Staphylococcus aureus strain RIVM1607 plasmid pRIVM1607, complete
            sequence.
ACCESSION   NZ_CP013620
VERSION     NZ_CP013620.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04325938
            Assembly: GCF_001465675.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 1442)
  AUTHORS   Bosch,T., Witteveen,S., Haenen,A., Landman,F. and Schouls,L.M.
  TITLE     Next-Generation Sequencing Confirms Presumed Nosocomial Transmission
            of Livestock-Associated Methicillin-Resistant Staphylococcus aureus
            in the Netherlands
  JOURNAL   Appl Environ Microbiol 82 (14), 4081-4089 (2016)
   PUBMED   27129960
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1442)
  AUTHORS   Witteveen,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-DEC-2015) Laboratory for Infectious Diseases &
            Screening, National Institute for Public Health & the Environment
            (RIVM), Antonie van Leeuwenhoeklaan 9, Bilthoven 3721 MA, The
            Netherlands
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: CLC Genomics Workbench v. version 8.5.1
            Sequencing Technology             :: 454; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/03/2024 07:57:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,708
            CDSs (total)                      :: 2,626
            Genes (coding)                    :: 2,542
            CDSs (with protein)               :: 2,542
            Genes (RNA)                       :: 82
            rRNAs                             :: 7, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 59
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 84
            CDSs (without protein)            :: 84
            Pseudo Genes (ambiguous residues) :: 0 of 84
            Pseudo Genes (frameshifted)       :: 40 of 84
            Pseudo Genes (incomplete)         :: 39 of 84
            Pseudo Genes (internal stop)      :: 25 of 84
            Pseudo Genes (multiple problems)  :: 17 of 84
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP013620.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1442
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="RIVM1607"
                     /isolation_source="unavailable"
                     /host="Homo sapiens"
                     /db_xref="taxon:1280"
                     /plasmid="pRIVM1607"
                     /geo_loc_name="Netherlands: Bilthoven"
                     /lat_lon="52.13 N 5.210 E"
                     /collection_date="2008-04-24"
                     /collected_by="Dutch National Institute for Public Health
                     and the Environment (RIVM)"
     gene            288..1184
                     /locus_tag="AUC49_RS13730"
                     /old_locus_tag="AUC49_13715"
     CDS             288..1184
                     /locus_tag="AUC49_RS13730"
                     /old_locus_tag="AUC49_13715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000532202.1"
                     /translation="MGRDKMIYLEDEKTVLDFHKNLTGGKLVVYLTYDQLNAQNLPLSD
                     SYDLKVKRYNNGVYKVCWYKNLRKKSNTNPYQKFNLEKRLKMSKEELEKLEEEQRRSHI
                     FEVKNLIKDYVLSNHFDMFWTLTFDPKKYDGEVSDELAYDLMRKWLHKMRNTHKRKSDE
                     PFNYIAIPERHKSGQIHWHMLTGYIEPNLIDSGKTFRNQKVYNCMDWKHGFTNVQKMRS
                     KSKVSSYMTKYITKDLLYSPVRKHKRKYWCSKGLALPEVYAGNYSEVADVLPLYDENGQ
                     LNPTHSNDVCDIWLFKV"
                     /name="hypothetical protein"
ORIGIN
        1 agcaagcacc aacagcaata catatagcct aaaggttcca tgtccaaaag gaaattggaa
       61 taaataaaaa agggcgtgcg cagtctgtat tagaccgtac acgctcttaa tgctattata
      121 tagctaaaat aaataaaaaa gagttacagc accctccgac caaagattgt gttgtaacga
      181 gtacttttgt taacttgtat gttactgtat tcggtttgta aaatcaagtt gataaatttg
      241 gaagtgttgt gactcttttt cagtgattgg aaaggagatt ttttattatg ggtcgagata
      301 aaatgattta tttggaagac gaaaaaactg ttttggattt ccacaaaaat ttgacgggag
      361 ggaagttggt cgtctacttg acatacgacc aacttaacgc acaaaattta cccctttctg
      421 actcttatga tttgaaggtt aaacgttata acaacggcgt ttataaagtt tgttggtaca
      481 aaaatttacg caaaaaatct aacactaatc cctaccaaaa atttaacctc gaaaaacgct
      541 taaaaatgtc taaagaagag ctggaaaaat tagaggaaga acaacgaaga agtcatattt
      601 ttgaagtaaa aaatttaatt aaggactatg tattgtctaa tcactttgat atgttttgga
      661 cgttgacgtt tgatccaaaa aaatatgacg gtgaggttag tgatgaatta gcttatgatt
      721 tgatgcgtaa gtggcttcat aaaatgagaa atactcataa gcgtaaaagt gatgagccgt
      781 ttaattatat agcgatacca gagcgtcata aaagtggcca aattcactgg catatgttga
      841 ctggttacat tgagccgaat ttgattgata gtggcaagac gtttagaaat cagaaagtat
      901 ataattgcat ggactggaag catggattta cgaacgttca aaaaatgcgg tcgaaatcaa
      961 aagtgagtag ctatatgact aaatacatca cgaaagattt actatatagt cctgttagaa
     1021 agcataagcg taagtattgg tgtagcaagg gcttagcatt gcccgaggtg tatgcaggca
     1081 attattctga agtagctgat gttttgccgc tatacgatga aaatgggcag ttaaacccga
     1141 cgcatagcaa tgatgtttgt gatatttggt tattcaaagt gtaaacgtat atgtgcttgc
     1201 gaggcgctga cggagtccat gcgctagtgg aacgtttagc aagcacatat acgcgcgata
     1261 gcgtttatat ttatatataa atatatattt atatgcctga ctgtttatat ttgctttcta
     1321 agcgttgtat aagctctttg tgttgattgt ttatgccgag aaaacttttg atatggaaaa
     1381 tggctatatg ttattacagc tagctgtaaa tgttggtgag tgattgaatg gggattagac
     1441 ca
//
