LOCUS       NZ_CP013225             3371 bp    DNA     circular CON 08-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Anatum strain GT-38
            plasmid PDM05, complete sequence.
ACCESSION   NZ_CP013225
VERSION     NZ_CP013225.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04274532
            Assembly: GCF_001447095.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Anatum
  ORGANISM  Salmonella enterica subsp. enterica serovar Anatum
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Marasini,D., Abo-Shama,U.H. and Fakhr,M.K.
  TITLE     Complete Genome Sequences of Salmonella enterica Serovars Anatum and
            Anatum var. 15+, Isolated from Retail Ground Turkey
  JOURNAL   Genome Announc 4 (1), e01619-15 (2016)
   PUBMED   26798111
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Marasini,D.N., Abo-Shama,U.H. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2015) Biological Science, University of Tulsa, 800
            S Tucker Dr, Tulsa, Ok 74104, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: CLC genomic workbench v. 7.5
            Reference-guided Assembly         :: CP007531.1
            Genome Coverage                   :: 121X
            Sequencing Technology             :: Illumina, Miseq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/08/2023 15:14:20
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,847
            CDSs (total)                      :: 4,739
            Genes (coding)                    :: 4,586
            CDSs (with protein)               :: 4,586
            Genes (RNA)                       :: 108
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 81
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 153
            CDSs (without protein)            :: 153
            Pseudo Genes (ambiguous residues) :: 0 of 153
            Pseudo Genes (frameshifted)       :: 74 of 153
            Pseudo Genes (incomplete)         :: 104 of 153
            Pseudo Genes (internal stop)      :: 18 of 153
            Pseudo Genes (multiple problems)  :: 38 of 153
            Pseudo Genes (short protein)      :: 1 of 153
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP013225.1.
            Source DNA/bacteria available from Fakhr Laboratory, University of
            Tulsa.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Salmonella enterica subsp. enterica serovar
                     Anatum"
                     /mol_type="genomic DNA"
                     /strain="GT-38"
                     /serovar="Anatum"
                     /isolation_source="ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:58712"
                     /plasmid="PDM05"
                     /geo_loc_name="USA: Tulsa"
                     /lat_lon="36.1314 N 95.9372 W"
                     /collection_date="2009"
                     /collected_by="Mohamed Fakhr"
     gene            complement(704..937)
                     /locus_tag="AS586_RS26140"
                     /old_locus_tag="AS586_23960"
     CDS             complement(704..937)
                     /locus_tag="AS586_RS26140"
                     /old_locus_tag="AS586_23960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(944..1504)
                     /locus_tag="AS586_RS26145"
                     /old_locus_tag="AS586_23965"
     CDS             complement(944..1504)
                     /locus_tag="AS586_RS26145"
                     /old_locus_tag="AS586_23965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1533..2192)
                     /locus_tag="AS586_RS26735"
                     /pseudo=""
     CDS             complement(<1533..2192)
                     /locus_tag="AS586_RS26735"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2182..2505)
                     /locus_tag="AS586_RS00580"
                     /old_locus_tag="AS586_23970"
     CDS             complement(2182..2505)
                     /locus_tag="AS586_RS00580"
                     /old_locus_tag="AS586_23970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2569..2760
                     /locus_tag="AS586_RS00585"
                     /old_locus_tag="AS586_23975"
     CDS             2569..2760
                     /locus_tag="AS586_RS00585"
                     /old_locus_tag="AS586_23975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(2842..2922)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(622..2192)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 cgtcacgcca ccacataccg ggaactgccg ccaaggtcta actcaaccaa tctagccgcg
       61 ctacatacgg tttttgtggc aactcatcag gtgtccgctg tcgatgaaac tctctgcgcc
      121 ggtagcggaa ctctcacgcg tgcggtcgcc gtcgtcacag ctcccccaac cgcaaacgat
      181 tctcgcaaat acgcaagtat ctgcaaaaac aggttttttt cggggttcct gggagactgt
      241 gctgttgaaa aattcttgaa gaatacagaa ggctcatgca aactgaatga actggtttct
      301 gttgtggatc tcaacagttt ccacaggaac attgaggagg tcagagacct caatgaaccc
      361 gaaacagctc gccttcctgg cgagctgttt tcgttctacg cccgccgacg aaagatcgca
      421 agtgcaataa cgagattttt cacgtcttta cgctcaaaaa gtaaaaaaac catgttttcc
      481 cctggctgaa tccccaaaaa cgcgtgaaat gcgttttcag gatgttgcat agctatgcac
      541 aaatacggca cacgatttgt ttcgctcgcc ccagccgtcg aactggtcaa aatggcaaga
      601 tttcgtcact tccccggtca catctccatt gatggcccac tccgaacccg tgccgcgcgt
      661 tcctgtacct catgtctgta ccgggcacgc tcctgttcat cccttagctg ttgttcgcga
      721 taaataaccg actcaagcga tccacttgcc cggctaatct ctgcacctgc tgactcaata
      781 tcacgacgcg ctcgttcagt atcgcgttgt tccgttgcgt aacctcgtgc atcttctgca
      841 attccgcgaa ggcgctctcc cactcgttca gccgccgcat atagtcctgt tgcaaatgct
      901 ctaaggcgtt cagcaaatgc ccttccagtt ccgtcatact cgtttactcc ctgaccagcc
      961 tcacggcgtt cttgtcgccc accgtccagg tgttttcccc tttcaccccg tccggcaaca
     1021 ccagaaattt cccgttctcg ccattgacga acgtcacccc ccaggttttt gcctcgagtt
     1081 tcgccagcgt gttttcctgc tctctgatag tcaggatatt tttcgcaatc ttgctttcct
     1141 gccactccat cagcccccag caccccagga aaatgccgcc cgtgacgctg agcgcggtca
     1201 gcgccggaaa cagtatccgc cctttgatca cccgccagag cagttttttc tgctgccggg
     1261 acagttcggc ctctgtggtg ctgaactgca tgctcacggt ggtgctcagc gtatccagtt
     1321 gctttttcac ggatgttgta tgttcgctga tagcgtctct gattttctgc ctgtttaagc
     1381 tcaatgcctt gtctacagac tcttcgagct tcctgaactc gctgttcagc atgttctcgg
     1441 tagaagcggc tcgctctttc agtttcttct cgaagtctgt tcccatttgt aaaagattgc
     1501 tcatacagcg ccccctttag cctgagattc cgccccccct ccgggtcggc aatactgatg
     1561 ctgcttttgg ttgtcctcac cacctcaaaa cctgccgctg taagcgcctc tgtgacatcc
     1621 tgacgcgttt ttattgctcc ggcatggtaa agagcctcaa gaccccgtgt aatcgcttct
     1681 gcggcctcct gtttcgcttt tggcagatta tttggcgtga caagcgtccg tctgttctcc
     1741 ggtgcgttcg ggtcacgcag cccgtaatga tgattaacca gcgtctgcca ggcatttatc
     1801 ctcggcctgt ccgcgcggtc gtagtacggc tggaggcgct taccgctctg tagctccatg
     1861 ttcgggatga caaaattcag ttcgagccgc cccttatcct ggtgttccac ccagagaatg
     1921 ctgtactggt ctttttcgag accgggcata agaacacgct caaagctcgt catcactctt
     1981 tcgcgttcac ccggcggtaa ctccttctcc gcgaacgaca gaacgcctga agtgtatttc
     2041 ttcgagaatg gcgtggaatc aatgagttcc cgcacttctt ccgggttacc ccggagcacc
     2101 gttgcgcctt cgcggttacg ctcccgcccc agcaggtaat cgaccgggcc acttccaccg
     2161 cctttccccc tggcatgaaa tttaactatc atcccgtacc ccctgttccc tgacagcctg
     2221 ccgcaactgg cgcaattcac cctcgatggc catcagtgcg gccaccacat gaacccggtc
     2281 aatcgaagac cactggccgc tgttcacctt ccgggctgtc tggttcaggt tgttcccgat
     2341 ggcagccaga tgccgcagca atggcggcga tagtgtcggc agttttcctg tgcgtgcaac
     2401 cggctccccc agacagaccc gccgcatcca ttccgccagt cgtttaccct cgcagcgttc
     2461 cagtaaccgg gcgtgctcct catcggtaac ccgtatcgtg agcatcttct cgcgtttcat
     2521 cggtatcatt ccccctaaca aatcccccat acaaggagcc ttaagaccat gaccaaacag
     2581 gaaaaaacag cccttaacat ggctcgcttt atcagaagcc agacgctaac cctgctggaa
     2641 aaactcaacg atctggacgc ggacgaacag gcagacatct gcgaatcact tcacgaccac
     2701 gccgacgaac tctaccgcag ttgcctcgca cgcttcggcg atgacggtga aagcaactga
     2761 aacatgcagc tcccggagac gttcacagct tgcctgtgag cggatgccgg gagcagacaa
     2821 gcccgccagg gcgcgtcagt gcgggtgtcg gggcgcagcc ctgacccagt tcacagagcg
     2881 atagcgatgt gtatactggc ttatctcatt ttgcatcggt gcagaatgga tgggaagtgc
     2941 accatgtcag gagtaaaaag ccgcacagat gtaaaaacag cgcacccgat aaacagcaca
     3001 cacgcggaca ctggcacagg cgcgtaagtg cacaatgctt gcatctgtga ctcttccgct
     3061 tcctcgccca ctcgctcact acgttcggtc gctggggctg cggcgagcgg tgggatcact
     3121 ctcgttgtga tgcagatccg tttttttttt tgcactggag ttatcaggag ttgcggtgca
     3181 catgggatcg tgcgatatgc cggatggtga aaggttggag ggaacggcaa caactcaccc
     3241 ctcccagtga agggacgggt agtttgccgc tctcgatatg ccggacggag ccaaggccat
     3301 cgatcacggg gcgcgtcagt ggaagaaccc gcgcctgcgt gacgtatgcg tcttcgccgc
     3361 accatctcac c
//
