LOCUS       NZ_CP013223             3371 bp    DNA     circular CON 08-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Anatum strain GT-01
            plasmid PDM03, complete sequence.
ACCESSION   NZ_CP013223
VERSION     NZ_CP013223.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04274533
            Assembly: GCF_001447115.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Anatum
  ORGANISM  Salmonella enterica subsp. enterica serovar Anatum
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3371)
  AUTHORS   Marasini,D., Abo-Shama,U.H. and Fakhr,M.K.
  TITLE     Complete Genome Sequences of Salmonella enterica Serovars Anatum and
            Anatum var. 15+, Isolated from Retail Ground Turkey
  JOURNAL   Genome Announc 4 (1), e01619-15 (2016)
   PUBMED   26798111
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3371)
  AUTHORS   Marasini,D.N., Abo-Shama,U.H. and Fakhr,M.K.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-NOV-2015) Biological Science, University of Tulsa, 800
            S Tucker Dr, Tulsa, Ok 74104, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: CLC genomic workbench v. 7.5, 2014
            Reference-guided Assembly         :: CP007531.1
            Genome Coverage                   :: 121X
            Sequencing Technology             :: Illumina, Miseq
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/08/2023 15:46:24
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,905
            CDSs (total)                      :: 4,794
            Genes (coding)                    :: 4,645
            CDSs (with protein)               :: 4,645
            Genes (RNA)                       :: 111
            rRNAs                             :: 5, 8, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 8, 7 (5S, 16S, 23S)
            tRNAs                             :: 82
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 149
            CDSs (without protein)            :: 149
            Pseudo Genes (ambiguous residues) :: 0 of 149
            Pseudo Genes (frameshifted)       :: 71 of 149
            Pseudo Genes (incomplete)         :: 102 of 149
            Pseudo Genes (internal stop)      :: 15 of 149
            Pseudo Genes (multiple problems)  :: 35 of 149
            Pseudo Genes (short protein)      :: 1 of 149
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP013223.1.
            Source DNA/bacteria available from Fakhr Laboratory, University of
            Tulsa.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3371
                     /organism="Salmonella enterica subsp. enterica serovar
                     Anatum"
                     /mol_type="genomic DNA"
                     /strain="GT-01"
                     /serovar="Anatum"
                     /isolation_source="ground turkey"
                     /sub_species="enterica"
                     /db_xref="taxon:58712"
                     /plasmid="PDM03"
                     /geo_loc_name="USA: Tulsa"
                     /lat_lon="36.1314 N 95.9372 W"
                     /collection_date="2009"
                     /collected_by="Mohamed Fakhr"
     gene            complement(join(3054..3371,1..6))
                     /locus_tag="AS587_RS24305"
                     /old_locus_tag="AS587_24255"
     CDS             complement(join(3054..3371,1..6))
                     /locus_tag="AS587_RS24305"
                     /old_locus_tag="AS587_24255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            70..261
                     /locus_tag="AS587_RS24310"
                     /old_locus_tag="AS587_24260"
     CDS             70..261
                     /locus_tag="AS587_RS24310"
                     /old_locus_tag="AS587_24260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(1576..1809)
                     /locus_tag="AS587_RS26425"
                     /old_locus_tag="AS587_24265"
     CDS             complement(1576..1809)
                     /locus_tag="AS587_RS26425"
                     /old_locus_tag="AS587_24265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137389.1"
                     /translation="MTELEGHLLNALEHLQQDYMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(1816..2376)
                     /locus_tag="AS587_RS26430"
                     /old_locus_tag="AS587_24270"
     CDS             complement(1816..2376)
                     /locus_tag="AS587_RS26430"
                     /old_locus_tag="AS587_24270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     gene            complement(<2405..3064)
                     /locus_tag="AS587_RS26990"
                     /pseudo=""
     CDS             complement(<2405..3064)
                     /locus_tag="AS587_RS26990"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     Typing          complement(343..423)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(1494..3064)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="92.817"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gagcatcttc tcgcgtttca tcggtatcat tccccctaac aaatccccca tacaaggagc
       61 cttaagacca tgaccaaaca ggaaaaaaca gcccttaaca tggctcgctt tatcagaagc
      121 cagacgctaa ccctgctgga aaaactcaac gatctggacg cggacgaaca ggcagacatc
      181 tgcgaatcac ttcacgacca cgccgacgaa ctctaccgca gttgcctcgc acgcttcggc
      241 gatgacggtg aaagcaactg aaacatgcag ctcccggaga cgttcacagc ttgcctgtga
      301 gcggatgccg ggagcagaca agcccgccag ggcgcgtcag tgcgggtgtc ggggcgcagc
      361 cctgacccag ttcacagagc gatagcgatg tgtatactgg cttatctcat tttgcatcgg
      421 tgcagaatgg atgggaagtg caccatgtca ggagtaaaaa gccgcacaga tgtaaaaaca
      481 gcgcacccga taaacagcac acacgcggac actggcacag gcgcgtaagt gcacaatgct
      541 tgcatctgtg actcttccgc ttcctcgccc actcgctcac tacgttcggt cgctggggct
      601 gcggcgagcg gtgggatcac tctcgttgtg atgcagatcc gttttttttt ttgcactgga
      661 gttatcagga gttgcggtgc acatgggatc gtgcgatatg ccggatggtg aaaggttgga
      721 gggaacggca acaactcacc cctcccagtg aagggacggg tagtttgccg ctctcgatat
      781 gccggacgga gccaaggcca tcgatcacgg ggcgcgtcag tggaagaacc cgcgcctgcg
      841 tgacgtatgc gtcttcgccg caccatctca cccgtcacgc caccacatac cgggaactgc
      901 cgccaaggtc taactcaacc aatctagccg cgctacatac ggtttttgtg gcaactcatc
      961 aggtgtccgc tgtcgatgaa actctctgcg ccggtagcgg aactctcacg cgtgcggtcg
     1021 ccgtcgtcac agctccccca accgcaaacg attctcgcaa atacgcaagt atctgcaaaa
     1081 acaggttttt ttcggggttc ctgggagact gtgctgttga aaaattcttg aagaatacag
     1141 aaggctcatg caaactgaat gaactggttt ctgttgtgga tctcaacagt ttccacagga
     1201 acattgagga ggtcagagac ctcaatgaac ccgaaacagc tcgccttcct ggcgagctgt
     1261 tttcgttcta cgcccgccga cgaaagatcg caagtgcaat aacgagattt ttcacgtctt
     1321 tacgctcaaa aagtaaaaaa accatgtttt cccctggctg aatccccaaa aacgcgtgaa
     1381 atgcgttttc aggatgttgc atagctatgc acaaatacgg cacacgattt gtttcgctcg
     1441 ccccagccgt cgaactggtc aaaatggcaa gatttcgtca cttccccggt cacatctcca
     1501 ttgatggccc actccgaacc cgtgccgcgc gttcctgtac ctcatgtctg taccgggcac
     1561 gctcctgttc atcccttagc tgttgttcgc gataaataac cgactcaagc gatccacttg
     1621 cccggctaat ctctgcacct gctgactcaa tatcacgacg cgctcgttca gtatcgcgtt
     1681 gttccgttgc gtaacctcgt gcatcttctg caattccgcg aaggcgctct cccactcgtt
     1741 cagccgccgc atatagtcct gttgcaaatg ctctaaggcg ttcagcaaat gcccttccag
     1801 ttccgtcata ctcgtttact ccctgaccag cctcacggcg ttcttgtcgc ccaccgtcca
     1861 ggtgttttcc cctttcaccc cgtccggcaa caccagaaat ttcccgttct cgccattgac
     1921 gaacgtcacc ccccaggttt ttgcctcgag tttcgccagc gtgttttcct gctctctgat
     1981 agtcaggata tttttcgcaa tcttgctttc ctgccactcc atcagccccc agcaccccag
     2041 gaaaatgccg cccgtgacgc tgagcgcggt cagcgccgga aacagtatcc gccctttgat
     2101 cacccgccag agcagttttt tctgctgccg ggacagttcg gcctctgtgg tgctgaactg
     2161 catgctcacg gtggtgctca gcgtatccag ttgctttttc acggatgttg tatgttcgct
     2221 gatagcgtct ctgattttct gcctgtttaa gctcaatgcc ttgtctacag actcttcgag
     2281 cttcctgaac tcgctgttca gcatgttctc ggtagaagcg gctcgctctt tcagtttctt
     2341 ctcgaagtct gttcccattt gtaaaagatt gctcatacag cgcccccttt agcctgagat
     2401 tccgcccccc ctccgggtcg gcaatactga tgctgctttt ggttgtcctc accacctcaa
     2461 aacctgccgc tgtaagcgcc tctgtgacat cctgacgcgt ttttattgct ccggcatggt
     2521 aaagagcctc aagaccccgt gtaatcgctt ctgcggcctc ctgtttcgct tttggcagat
     2581 tatttggcgt gacaagcgtc cgtctgttct ccggtgcgtt cgggtcacgc agcccgtaat
     2641 gatgattaac cagcgtctgc caggcattta tcctcggcct gtccgcgcgg tcgtagtacg
     2701 gctggaggcg cttaccgctc tgtagctcca tgttcgggat gacaaaattc agttcgagcc
     2761 gccccttatc ctggtgttcc acccagagaa tgctgtactg gtctttttcg agaccgggca
     2821 taagaacacg ctcaaagctc gtcatcactc tttcgcgttc acccggcggt aactccttct
     2881 ccgcgaacga cagaacgcct gaagtgtatt tcttcgagaa tggcgtggaa tcaatgagtt
     2941 cccgcacttc ttccgggtta ccccggagca ccgttgcgcc ttcgcggtta cgctcccgcc
     3001 ccagcaggta atcgaccggg ccacttccac cgcctttccc cctggcatga aatttaacta
     3061 tcatcccgta ccccctgttc cctgacagcc tgccgcaact ggcgcaattc accctcgatg
     3121 gccatcagtg cggccaccac atgaacccgg tcaatcgaag accactggcc gctgttcacc
     3181 ttccgggctg tctggttcag gttgttcccg atggcagcca gatgccgcag caatggcggc
     3241 gatagtgtcg gcagttttcc tgtgcgtgca accggctccc ccagacagac ccgccgcatc
     3301 cattccgcca gtcgtttacc ctcgcagcgt tccagtaacc gggcgtgctc ctcatcggta
     3361 acccgtatcg t
//
