LOCUS       NZ_CP012953             4754 bp    DNA     circular CON 25-NOV-2023
DEFINITION  Acinetobacter baumannii strain D36 plasmid pD36-1 clone GC1,
            complete sequence.
ACCESSION   NZ_CP012953
VERSION     NZ_CP012953.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04029125
            Assembly: GCF_001399655.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 4754)
  AUTHORS   Hamidian,M., Hawkey,J., Holt,K.E. and Hall,R.M.
  TITLE     Genome Sequence of Acinetobacter baumannii Strain D36, an
            Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1
  JOURNAL   Genome Announc 3 (6), e01478-15 (2015)
   PUBMED   26679588
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4754)
  AUTHORS   Hamidian,M., Hawkey,J., Holt,K.E. and Hall,R.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2015) School of Molecular Bioscience, The
            University of Sydney, G08 Maze Cres., Bultin Ave., Darlington,
            Sydney, NSW 2006, Australia
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: SMRT Analysis Suite v. 2.3.0, RS_Assembly_HGAP3
            Assembly Name                     :: AbD36v1.0
            Genome Coverage                   :: 150x
            Sequencing Technology             :: PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/25/2023 01:24:01
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,005
            CDSs (total)                      :: 3,909
            Genes (coding)                    :: 3,820
            CDSs (with protein)               :: 3,820
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 73
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 89
            CDSs (without protein)            :: 89
            Pseudo Genes (ambiguous residues) :: 0 of 89
            Pseudo Genes (frameshifted)       :: 38 of 89
            Pseudo Genes (incomplete)         :: 52 of 89
            Pseudo Genes (internal stop)      :: 14 of 89
            Pseudo Genes (multiple problems)  :: 14 of 89
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP012953.1.
            Source DNA/bacteria available from Ruth Hall, University of Sydney
            (ruth.hall@sydney.edu.au).
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4754
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="D36"
                     /isolation_source="wound"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /clone="GC1"
                     /plasmid="pD36-1"
                     /geo_loc_name="Australia: Sydney"
                     /lat_lon="33.8650 S 151.2094 E"
                     /collection_date="2008"
                     /collected_by="Clarence Fernandez"
                     /genotype="GC1"
     gene            join(4458..4754,1..450)
                     /locus_tag="AN415_RS20985"
     CDS             join(4458..4754,1..450)
                     /locus_tag="AN415_RS20985"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="WP_047930082.1"
                     /translation="MGITVDKNKVVTFTAQTEQLVNTSIDANPNQYKLNDLVIYGIFKR
                     LYSRQGGDGNPLIYALKGQRGYSISLQECGKFNPNLSAILDHLLTQKNYEVILTMPSSH
                     KVVERFAIKINRRISKDCLLITDIFTKKTFSEVYEDLQNLPLTPQYKRDIIALRRTIER
                     DAQRNPHKVFSMKEVDTKDRMFIRPLKINPERMKTIQQIQGKSILLVDDLLASGTTLTS
                     AYNLLKDLEISDEIEAICLLGKLGNK"
                     /name="phosphoribosyltransferase"
     gene            complement(701..1156)
                     /locus_tag="AN415_RS19470"
                     /old_locus_tag="AN415_05002"
     CDS             complement(701..1156)
                     /locus_tag="AN415_RS19470"
                     /old_locus_tag="AN415_05002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005207329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000904779.1"
                     /translation="MLIGLIVAGIVLYLIVSSYLRRSKDADEKTLRPMSEWVILANSGT
                     KGHREKMSYSLIVQAAAILESQKVLPNKSLRSLMISKPELSKSNFVLLIMESTAELCPN
                     EFEFLKKSYKTEQARVHLAQCIGLILHHGGESALAQIALAACSEPID"
                     /name="hypothetical protein"
     gene            complement(1232..3046)
                     /locus_tag="AN415_RS19475"
                     /old_locus_tag="AN415_05003"
     CDS             complement(1232..3046)
                     /locus_tag="AN415_RS19475"
                     /old_locus_tag="AN415_05003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000634474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="WP_047930083.1"
                     /translation="MIVDFFRHGSGLSKGCLDYLLGEDRERDNALVLSGDVELTAQLID
                     SSPFAKKYTSGCLSFYEHDLSDHDKQKIMQNFEECLFPGLEKDQYQILWVQHQDKVNQD
                     TGETRLELNFVIPNVELSTGKRLQPFYAPVDLDRVDLFKQITNAEHGLYDPDDPNNQQL
                     LINKKNLPKDVKDFKDQLHQRICQAVIDGKFADRQELVHWLESNEIKVTRQTQKSISIE
                     NPYEGATRPIRLSGEVYEQGFRATGEYRQEVQRRIEAYRGTTSERYRANVTDYQRQLEH
                     KSQYHRDRYPTVGREISPEYTEQLTAAREAPRTVPSLATVQIEPFKANERADTDRRTAS
                     SEQKPTETPFHVEYRTDFSSSYFAYSDFLVRSRHKKQVQRNTDLEYGNQREANASGSPE
                     PIRGQFDVQHMQTAKQQSPTSVYSDQQERRGMAERLHDSNGVLSDDRIRNTVIENHRRT
                     TAAITATTRAIAAATADFKHDANQNYPRLINTIKDNRERTERLSANTKVISDNTDTISR
                     ARTKYGKLYRADQWQSQRDEPNYREQRRSSRENLNYTAFSLVRSSQSSAEFARNVRAIE
                     ANIIQMKERKKEMEQPQPKPDRGMSWGM"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3036..3437)
                     /locus_tag="AN415_RS19480"
                     /old_locus_tag="AN415_05004"
     CDS             complement(3036..3437)
                     /locus_tag="AN415_RS19480"
                     /old_locus_tag="AN415_05004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004706792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_060492355.1"
                     /translation="MEIDSVTKQKAVRERTFKVRLSESEYQLLDANNPFGSIAKLLRQS
                     AIEKATKIHNSKAEDDQKIKPTKVIESSYSKTERALILELGRIGNNVNQIAKAINTDIA
                     GTGTFDKVKLLHLLISIDQQLRELRPDDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(1236..3046)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 atgccatctt ctcataaagt ggtagaaagg tttgctataa aaataaatag aagaatttca
       61 aaagattgtc tcttaataac agatatattc acaaagaaaa ctttcagtga agtctatgaa
      121 gatcttcaga atctgcctct aacgccacaa tacaaaagag atattattgc cctacgtcgc
      181 acaatagaga gagatgccca aagaaatcct cataaagtat tttcaatgaa agaagtcgat
      241 acaaaggaca gaatgttcat tcgcccctta aaaataaacc ctgaacggat gaaaacaatc
      301 caacaaatcc aagggaaatc tatactcctt gttgatgatt tattagcgag tggtacaaca
      361 ttaacaagtg cttataactt actaaaagat ttggaaataa gtgacgaaat agaagcaatt
      421 tgtttattag gtaaactcgg taacaaataa ctgtacatca ctaaaattaa caaaagttaa
      481 tgtaaaattt tctttataga ggtatactaa atacatagac cattcatgtg ctcaatggtc
      541 tttaaagata gggtgtatgc ccagagcccg agcagcaccg tcaaacgagg tcagactata
      601 agagtcaagt atcgtttatc taggcatcgg ctagtaaagt tttataaaaa aaggaaactt
      661 agaggtttcc tttttttatt gccaatcttt tagtaaatta ttaatcaatt ggttcagaac
      721 atgcagcaag cgcaatttgc gctaaggctg attcaccgcc atgatgtaaa atcaaaccga
      781 tacattgggc tagatgtact ctagcttgtt ctgttttata cgattttttt aagaactcaa
      841 actcattcgg acaaagttca gccgtagatt ccattattaa taaaacaaaa tttgatttag
      901 ataactctgg ttttgaaatc attaaactcc ttaatgattt atttggtaaa actttctgac
      961 tctctagaat tgcggctgct tgaacaatta agctgtaaga cattttttcc ctatgtcctt
     1021 tagttccact gtttgccagt attacccatt cagacattgg tctcaaagtt ttctcatctg
     1081 catcttttga ccttcttaaa taagatgaaa ctattaaata caaaacaata ccagcaacaa
     1141 ttaaacctat tagcattact ttctagctca aaaaatttga gcaagtataa aaccaaagct
     1201 taaaagctac taattattag cctttgtgta gttacatccc ccaactcata cccctatctg
     1261 gtttaggttg gggctgttcc atttcctttt tccgttcttt catctggatg atattcgctt
     1321 caatagctcg gacgtttcga gcaaattctg ctgagctttg gctacttctg acgagactga
     1381 atgctgtgta gttgagattc tctcgagaac ttcttcgttg ttctctgtaa tttggctcat
     1441 ctctctgact ttgccattga tctgctcgat atagcttgcc gtatttcgtt ctagctcgtg
     1501 aaattgtgtc tgtgttgtcg ctaatgactt ttgtgtttgc actaagtctt tctgtacgct
     1561 ctcgattgtc tttgattgtg ttgataaggc gtggataatt ttggtttgca tcgtgtttaa
     1621 agtctgctgt tgctgctgca attgctcttg ttgttgcagt aattgctgct gttgttcttc
     1681 gatgattctc aataactgtg tttctaattc ggtcatcgct taatacccca ttggaatcat
     1741 gtaaccgttc tgccattccc ctgcgttctt gttgatctga atacacagac gttgggcttt
     1801 gctgtttggc tgtttgcatg tgctgaacgt caaactgccc cctgatcggt tcaggtgatc
     1861 cactcgcatt tgcttctcgt tgattgccat attcaaggtc tgtatttcgc tgtacttgtt
     1921 ttttgtgacg agaccgaacg agaaaatcac tataagcaaa ataactgcta ctgaaatcag
     1981 tccgatattc aacatggaaa ggtgtttcag taggcttttg ttctgaactt gctgttcttc
     2041 tgtctgtatc tgctcgttca tttgctttaa acggctcaat ttggactgta gcaaggcttg
     2101 gtactgttcg aggtgcttct cgagctgctg tgagctgttc tgtatattct gggctaattt
     2161 ctcgtccgac tgttggatag cggtcgcggt gatattggct cttgtgctca agctgtcttt
     2221 gataatctgt gacgtttgct cgataccgct cagaagttgt tcctcggtac gcttcaattc
     2281 gtcgttgtac ttcttgtcga tattcgccag tagctctaaa gccttgctca taaacctctc
     2341 cactcaaacg gataggacgt gttgcgccct cgtatgggtt ttcgattgat attgattttt
     2401 gggtttgtcg ggtgactttg atttcattag attcaagcca gtgcaccaat tcttgccgat
     2461 cggcaaattt gccatcaatt acagcttggc aaatccgttg gtgtaattga tctttaaaat
     2521 ccttcacatc tttgggtaag ttctttttat tgattaaaag ctgctgattg ttcgggtcat
     2581 cggggtcata cagcccatgc tctgcattgg tgatctgctt aaaaagatcc actcgatcga
     2641 gatccacggg ggcatagaaa ggttgtagcc gtttacctgt cgaaagctca acatttggaa
     2701 tcacaaaatt caactctagc cttgtctctc cagtgtcttg gttgaccttg tcttggtgct
     2761 gcacccataa aatttgatac tggtctttct ctagtcctgg gaataagcat tcctcaaaat
     2821 tttgcatgat tttttgttta tcatggtctg ataaatcatg ctcgtaaaag gataaacaac
     2881 ctgaggtata ttttttggca aaagggctgc tatcaataag ttgagcggtt agttcgacat
     2941 caccactgag cacaagggca ttatcacgct ctcgatcttc acctaacaaa taatcaagac
     3001 agcctttaga caaacctgaa ccatgtctga aaaaatcaac gatcatctgg acgtaactcc
     3061 ctaagttgct gatctatcga aatcaacaaa tgaagtagct ttactttgtc aaacgttcct
     3121 gtccctgcaa tatctgtatt aattgctttc gcaatttgat tcacgttatt accaattcga
     3181 ccaagttcta aaattaaagc tcgttctgtc ttgctatacg aagattcaat cacctttgtt
     3241 ggtttaattt tttggtcatc ttctgctttg gaattatgaa tctttgttgc tttctctatt
     3301 gcggactgac gtagcaactt tgcaatagaa ccaaacggat tattggcatc gagcaattga
     3361 tactctgatt ctgacagtct gactttaaaa gttcgttctc gaactgcttt ctgtttagtt
     3421 actgaatcta tttccacttg aacaatccaa ttggtatgaa accggcttaa gggaaaatct
     3481 ttgatttttc tttaagctgg ttttcggggg tatcgggggt gaagcccctg atcaaggtca
     3541 cagattatca ctgtttaacg aagttaaata ggggtatctg tgtatccttg cttatttaat
     3601 tgcaggcaca tgtctaacat caaaatttaa tcaaatgaca cggtatctaa actctaggaa
     3661 atatttgcta agttggcatg aatcttgaaa aaaataaggc actcaactca ttctcaacgc
     3721 cccacatccc tcgctttgct cgggctgatg gtgaacgttg agtgagtttc ggcaatactc
     3781 accctaaggg cgaccatctg aaaagatggc acatccccta agtattgccg acttaaccta
     3841 atgggctgac ggagccacgc atcggtcgta tccgcaccat gctttgcaca catagcagac
     3901 aaggactaaa ggtcttgcac ctctccccac gcgctccttg tcgaagtatg gcagtatctc
     3961 tgcgaggatt gctccaacat gcaacttaac cgacctatac aactactctc aacgctccgc
     4021 ttatgtgggg ttcccctgta acggttcagc tcgagctttt cagccttcac tatcgctacg
     4081 ttgcaccagt gacacttatt ccctccacat gcaacgcatg ccaaccgaaa atcgggcacg
     4141 cagaagtagg caaaacttgc tgaaaagaag cttatttgac acgcggaaat caggtaacga
     4201 aggacttttt actgatacaa tacttgccat tttttatcag tttgataaaa tctgaaaagc
     4261 ggtacaagcc gataaggtga aatcataacg gtcgccaaac cttatgatct tcgttacttg
     4321 atgcgttaac atcaaataac tgcgtaccac caaatataaa gcgaaagtcc aataagtttc
     4381 aagacttatt ggactttttc ttttttataa agataatttt accaataaat ttttaagtta
     4441 atcagtcgag aaaaaacttg ggtattaccg ttgataaaaa caaagttgta acctttacag
     4501 cacaaaccga acaactggta aatacatcta ttgatgctaa ccctaatcaa tataaactca
     4561 atgacttagt gatttacggt atttttaaac gcctatatag ccgacaaggt ggtgatggaa
     4621 accctttaat ttatgcctta aaagggcaac gagggtactc aatatcacta caagaatgtg
     4681 gtaaatttaa tcccaattta tctgcaattc ttgatcattt attaacacaa aaaaactatg
     4741 aagtaattct aacc
//
