LOCUS       NZ_CP012933             3319 bp    DNA     circular CON 08-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            N13-01290 plasmid pN13-01290_3-1, complete sequence.
ACCESSION   NZ_CP012933
VERSION     NZ_CP012933.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04156715
            Assembly: GCF_001441245.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 3319)
  AUTHORS   Labbe,G., Edirmanasinghe,R., Ziebell,K., Nash,J.H., Bekal,S.,
            Parmley,E.J., Mulvey,M.R. and Johnson,R.P.
  TITLE     Complete Genome and Plasmid Sequences of Three Canadian Isolates of
            Salmonella enterica subsp. enterica Serovar Heidelberg from Human
            and Food Sources
  JOURNAL   Genome Announc 4 (1), e01526-15 (2016)
   PUBMED   26769926
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3319)
  AUTHORS   Labbe,G., Edirmanasinghe,R., Ziebell,K., Nash,J.H.E., Bekal,S.,
            Irwin,R., Mulvey,M.R. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2015) Public Health Agency of Canada, Laboratory
            for Foodborne Zoonoses, 110 Stone Road West, Guelph, Ontario N1G3W4,
            Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2015
            Assembly Method                   :: MIRA v. 4.9.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 70.0x
            Sequencing Technology             :: Illumina MiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/08/2023 15:02:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,071
            CDSs (total)                      :: 4,949
            Genes (coding)                    :: 4,823
            CDSs (with protein)               :: 4,823
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 126
            CDSs (without protein)            :: 126
            Pseudo Genes (ambiguous residues) :: 0 of 126
            Pseudo Genes (frameshifted)       :: 49 of 126
            Pseudo Genes (incomplete)         :: 89 of 126
            Pseudo Genes (internal stop)      :: 25 of 126
            Pseudo Genes (multiple problems)  :: 31 of 126
            Pseudo Genes (short protein)      :: 1 of 126
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP012933.1.
            Source DNA and Bacteria are available  from Michael Mulvey, Chief
            of the Antimicrobial Resistance and Nosocomial Infections Unit,
            National Microbiology Laboratory at Winnipeg, Public Health Agency
            of Canada, 1015 Arlington St. Winnipeg, MB, Canada, R3E 3R2.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3319
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="N13-01290"
                     /serovar="Heidelberg"
                     /isolation_source="turkey meat"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="pN13-01290_3-1"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2012-01"
                     /collected_by="CIPARS"
                     /serogroup="B"
     gene            complement(join(3297..3319,1..172))
                     /locus_tag="APS44_RS24575"
                     /old_locus_tag="APS44_25080"
     CDS             complement(join(3297..3319,1..172))
                     /locus_tag="APS44_RS24575"
                     /old_locus_tag="APS44_25080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041620.1"
                     /translation="MNKQQQAVLNMAGFIKSQSLTLLEKLDALDADEQAAMCEKLHELA
                     EELQNSIQTRFEVENSTER"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            457..780
                     /gene="mobA"
                     /locus_tag="APS44_RS24580"
                     /old_locus_tag="APS44_25085"
     CDS             457..780
                     /gene="mobA"
                     /locus_tag="APS44_RS24580"
                     /old_locus_tag="APS44_25085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052604.1"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization protein MobA"
                     /protein_id="WP_000166966.1"
                     /translation="MTKRSGSNTRRRAISRPVRLTAEEDQEIRKRAAECGKTVSGFLRA
                     AALGKKVNSLTDDRVLKEVMRLGALQKKLFIDGKRVGDREYAEVLIAITEYHRALLSRL
                     MAD"
                     /name="mobA"
     gene            complement(1015..1395)
                     /gene="lsoB"
                     /locus_tag="APS44_RS24585"
                     /old_locus_tag="APS44_25090"
     CDS             complement(1015..1395)
                     /gene="lsoB"
                     /locus_tag="APS44_RS24585"
                     /old_locus_tag="APS44_25090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin LsoB"
                     /protein_id="WP_000710826.1"
                     /translation="MKKDKKYQIEAIKNKDKTLFIVYATDIYSPSEFFSKIESDLKKKK
                     SKGDVFFDLIIPNGGKKDRYVYTSFNGEKFSSYTLNKVTKTDEYNDLSELSASFFKKNF
                     DKINVNLLSKATSFALKKGIPI"
                     /name="lsoB"
     gene            complement(1392..2432)
                     /gene="lsoA"
                     /locus_tag="APS44_RS24590"
                     /old_locus_tag="APS44_25095"
     CDS             complement(1392..2432)
                     /gene="lsoA"
                     /locus_tag="APS44_RS24590"
                     /old_locus_tag="APS44_25095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA
                     endoribonuclease LsoA"
                     /protein_id="WP_000068433.1"
                     /translation="MAQNPFKALNINIDKIESALTQNGVTNYSSNVKNERETHISGTYK
                     GIDFLIKLMPSGGNTTIGRASGQNNTYFDEIALIIKENCLYSDTKNFEYTIPKFSDDDR
                     ANLFEFLSEEGITITEDNNNDPNCKHQYIMTTSNGDRVRAKIYKRGSIQFQGKYLQIAS
                     LINDFMCSILNMKEIVEQKNKEFNVDIKKETIESELHSKLPKSIDKIHEDIKKQLSCSL
                     IMKKIDVEMEDYSTYCFSALRAIEGFIYQILNDVCNPSSSKNLGEYFTENKPKYIIREI
                     HQETINGEIAEVLCECYTYWHENRHGLFHMKPGIADTKTINKLESIAIIDTVCQLIDGG
                     VARLKL"
                     /name="lsoA"
     gene            complement(2697..2810)
                     /locus_tag="APS44_RS28145"
     CDS             complement(2697..2810)
                     /locus_tag="APS44_RS28145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001459398.1"
                     /translation="MHEPPVQPDRCALSGNYRLESNPVRHDLSPLAAAIGN"
                     /name="hypothetical protein"
     Typing          208..448
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="2.12e-123"
     Typing          complement(2739..3268)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.972"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          458..777
                     /name="MOBF"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.065"
                     /coverage="100.0"
                     /evalue="1.76e-62"
ORIGIN
        1 cttcaaagcg tgtctggatg ctgttctgga gttcttctgc gagttcgtgc agcttctcac
       61 acatggcagc ctgttcgtca gcatcgagtg cgtccagctt ttcgagcagc gtcaggctct
      121 ggctttttat gaatcctgcc atgttgagta cggcttgctg ctgcttgttc atcttttcgt
      181 tttctccgtt ctgtctgtca tctgcgttgt gtgattatat cgcgtaccac ttttcgactg
      241 ttttaccgcc ggtattctgc cgtctgacgc tttgacgggt atttctgcct gacaatactg
      301 tcactgccaa aaaactgccg tgcctttgtc ggtaattcga gcttgctgac aggacaggat
      361 gtgcaattgt tataccgcgc atacatgcac gctattacaa ttaccctggt cagggcttcg
      421 ccccgacacc ccatgtcaga tacggagcca tgttttatga caaaacgaag tggaagtaat
      481 acgcgcaggc gggctatcag tcgccctgtt cgtctgacgg cagaagaaga ccaggaaatc
      541 agaaaaaggg ctgctgaatg cggcaagacc gtttctggtt ttttacgggc ggcagctctc
      601 ggtaagaaag ttaactcact gactgatgac cgggtgctga aagaagttat gcgactgggg
      661 gcgttgcaga aaaaactctt tatcgacggc aagcgtgtcg gggacagaga gtatgcggag
      721 gtgctgatcg ctattacgga gtatcaccgt gccctgttat ccaggcttat ggcagattag
      781 cttcccggag agaaactgtc gaaaacagac ggtatgaacg ccgtaagccc ccaaaccgat
      841 cgccattcac tttcatgcat agctatgcag tgagctgaaa gcgatcctga cgcatttttc
      901 cggtttaccc cggggaaaac atctcttttt gcggtgtctg cgtcagaatc gcgttcagcg
      961 cgttttggcg gtgcgcgtaa tgagacgtta tggtaaatgt cttctggctt gatattatat
     1021 tggaatgcct tttttcaaag caaatgatgt ggctttggat agaaggttta cgttgatctt
     1081 atcaaagttt tttttaaaga acgaagccga gagctcagat aaatcattat attcatcagt
     1141 tttcgtaact ttgtttaatg tgtaacttga aaacttctcg ccattaaatg acgtatagac
     1201 gtaacgatct ttttttccac cgttaggaat tattaaatca aaaaaaacat cacccttgct
     1261 tttctttttc tttaagtcgg attcgatttt tgagaaaaat tcgctcgggc tataaatatc
     1321 agtagcatag acaataaata aagttttatc tttatttttt attgcttcta tttgatattt
     1381 tttatctttt ttcataattt caacctagct acgccaccat ctattaattg gcaaacggta
     1441 tcgatgattg cgattgattc taatttgtta attgtcttcg tgtcagctat tcctggtttc
     1501 atatgaaaca aaccatgcct gttctcatgc cagtaagtgt agcattcaca caaaacttcc
     1561 gctatttcac catttatagt ttcttggtgt atttctctga ttatatattt gggtttgttt
     1621 tcagtgaagt attcgccaag gttctttgat gatgatggat tgcaaacatc attaagtatt
     1681 tgatatataa agccttctat ggctcttaat gcagagaagc agtatgttga gtaatcttcc
     1741 atttcgacat ctattttttt cattattagc gagcatgata gctgtttttt gatatcttca
     1801 tggattttat cgatgctttt tggtagtttg ctatgcaact cggactcaat agtttctttt
     1861 tttatgtcaa cattaaattc tttatttttt tgttcgacaa tctctttcat gtttagtatt
     1921 gagcacatga aatcgttaat caaactcgcg atttgaaggt attttccttg gaattgaata
     1981 gagccgcgct tgtaaatttt tgccctgacc ctgtcaccat tgctggtggt cataatatat
     2041 tggtgtttac aattaggatc gttattatta tcttctgtta ttgttatccc ctcttcagaa
     2101 agaaattcaa atagatttgc cctgtcatca tcactgaatt ttggaatggt gtattcaaag
     2161 ttctttgtgt ctgaatacaa acagttttct tttataatca aggcgatttc atcaaagtaa
     2221 gtgttatttt gcccagacgc tcttccgata gtggtatttc cgcctgatgg cattagtttt
     2281 attaagaagt ctattccttt atatgtgcca gatatgtgag tttctctttc gttttttaca
     2341 ttagaggaat agtttgtgac gccattctgc gtcagagcag actcaatctt gtcaatattg
     2401 atatttagtg ctttaaacgg gttctgtgcc attgggtcaa tccgttgttt tttttgaata
     2461 tgtacagatc ttgttttttt gtcaacggaa tagctgttcg ttgacttgat agaccgattg
     2521 attcatcatc tcataaataa agaaaaacca ccgctaccaa cggtggtttt ctcaaggttc
     2581 gctgagctac caactctttg aaccaaggta actggcttgg aggagcgcag tcaccaaaat
     2641 ctgttctttc agtttagcct taacaggtgc ataacttcaa gacaaactcc tctaaatcag
     2701 ttaccaatgg ctgctgccag tggcgataag tcgtgtctta ccgggttgga ctcaagacga
     2761 tagttaccgg ataaggcgca gcggtcgggc tgaacggggg gttcgtgcac acagcccagc
     2821 ttggagcgaa cgacctacac cgaactgaga taccaacagc gtgagctatg agaaagcgcc
     2881 acgcttcccg aagggagaaa ggcggacagg tatccggtaa gcggcagggt cggaacagga
     2941 gagcgcacga gggagcttcc agggggaaac gcctggtatc tttatagtcc tgtcgggttt
     3001 cgccacctct ggcttgagcg tcgatttttg tgatgctcgt caggggggcg gagcctatgg
     3061 aaaaacgcct gcggcgttgg cttcttccgg tgctttgctt tttgctcaca tgttctttcc
     3121 ggctttatcc cctgattctg tggataaccg tattaccgct tttgagtgag ctgacaccgc
     3181 tcgccgcagt cgaacgaccg agcgtagcga gtcagtgagc gaggaagcgg aagagcgcct
     3241 tatgtgacat tttctcctta cgctctgttg tgccgttcgg catcctgtcc tgagagttat
     3301 ctctctgtgc tattttcta
//
