LOCUS       NZ_CP012925             2096 bp    DNA     circular CON 15-DEC-2023
DEFINITION  Salmonella enterica subsp. enterica serovar Heidelberg strain
            12-4374 plasmid p12-4374_2, complete sequence.
ACCESSION   NZ_CP012925
VERSION     NZ_CP012925.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN04156727
            Assembly: GCF_001441225.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Heidelberg
  ORGANISM  Salmonella enterica subsp. enterica serovar Heidelberg
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Labbe,G., Edirmanasinghe,R., Ziebell,K., Nash,J.H., Bekal,S.,
            Parmley,E.J., Mulvey,M.R. and Johnson,R.P.
  TITLE     Complete Genome and Plasmid Sequences of Three Canadian Isolates of
            Salmonella enterica subsp. enterica Serovar Heidelberg from Human
            and Food Sources
  JOURNAL   Genome Announc 4 (1), e01526-15 (2016)
   PUBMED   26769926
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Labbe,G., Edirmanasinghe,R., Ziebell,K., Nash,J.H.E., Bekal,S.,
            Irwin,R., Mulvey,M.R. and Johnson,R.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-OCT-2015) Public Health Agency of Canada, Laboratory
            for Foodborne Zoonoses, 110 Stone Road West, Guelph, Ontario N1G3W4,
            Canada
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Date                     :: 2015
            Assembly Method                   :: MIRA v. 4.9.3
            Genome Representation             :: Full
            Expected Final Version            :: Yes
            Genome Coverage                   :: 133.0x
            Sequencing Technology             :: Illumina MiSeq; PacBio
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/15/2023 04:17:12
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,913
            CDSs (total)                      :: 4,789
            Genes (coding)                    :: 4,672
            CDSs (with protein)               :: 4,672
            Genes (RNA)                       :: 124
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 16
            Pseudo Genes (total)              :: 117
            CDSs (without protein)            :: 117
            Pseudo Genes (ambiguous residues) :: 0 of 117
            Pseudo Genes (frameshifted)       :: 46 of 117
            Pseudo Genes (incomplete)         :: 81 of 117
            Pseudo Genes (internal stop)      :: 26 of 117
            Pseudo Genes (multiple problems)  :: 30 of 117
            Pseudo Genes (short protein)      :: 1 of 117
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP012925.1.
            Source DNA and Bacteria are available  from Michael Mulvey, Chief
            of the Antimicrobial Resistance and Nosocomial Infections Unit,
            National Microbiology Laboratory at Winnipeg, Public Health Agency
            of Canada, 1015 Arlington St. Winnipeg, MB, Canada, R3E 3R2.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Heidelberg"
                     /mol_type="genomic DNA"
                     /strain="12-4374"
                     /serovar="Heidelberg"
                     /isolation_source="human stool"
                     /host="Homo sapiens"
                     /sub_species="enterica"
                     /db_xref="taxon:611"
                     /plasmid="p12-4374_2"
                     /geo_loc_name="Canada: Quebec"
                     /collection_date="2012"
                     /collected_by="CIPARS"
                     /serogroup="B"
     gene            88..1077
                     /locus_tag="APS45_RS23205"
                     /old_locus_tag="APS45_24245"
     CDS             88..1077
                     /locus_tag="APS45_RS23205"
                     /old_locus_tag="APS45_24245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1080..1161
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(804..995)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 ttcgaattgg tgatacgact aacacaacag gtgatatggc aatgataaca cgtcagatga
       61 gccatcgccc actatcgggt ggtgcgcatg aaaaaccctg atctccagaa cctcacggac
      121 tattccccct cagatgcgcc ctgggacgct cacagaagcg tttctgatga cgtgggaggg
      181 atttacctgc ttgcagccga atatgagcgc tacggggcgc gtatggctct ctgtggtggt
      241 ttactgcgtt tcgggtggtc taccctcaag gaaaccggag aaacgcgtct gaggctgcgt
      301 gaggcgcatt tctgccgtgt ccggcattgt cctgtctgcc agtggaggcg ctccctgatg
      361 tggcaagccc gtttctacca gtccctgccg cgtatcgtgg cggattatcc cgatgcccgc
      421 tggatgttcc tgactctgac cgtgcgcaac tgtgcgatcg gggagctggg cgagatgctg
      481 aaccggatga atgcagcttt tcagcgcatg aaggttcgca aggagttccg gcctgtgcag
      541 ggctggatac gtaccacgga agtcacccgc gggagcgacg gcagcgcaca cccgcacttc
      601 cacaccctga tgatggtgcc gcctggcatg ctaaatggga aaagttacgt caggcatgaa
      661 cgctgggttg aactctggcg ggagtgtctg cgggtcgatt atgacccgaa tgttgatgtc
      721 cgggcagtga aacctcgtaa gccgaagggc ggcgaatcgc tggcctgcgc gaccgccgaa
      781 ctggtgcgcg gtgcggtggc cgaaaccctg aaatattcca cgaagccggc tgacatggtg
      841 gccgatcctg aatggttcct cgaactgacc cgccagacgc acaagcgccg ctttgtggcg
      901 accggcggcg cactcaaaga cgtgctgaaa ctcgatcagg aaactgacgc cgacatggtg
      961 atcggtgatg atatttccga gggcgacgat gacggttcac gaatcgcgtt cgagtggaaa
     1021 accgaggtca gaaagtaccg tcgctcaccg acgaaagata aaactgaatc aggctagcgg
     1081 ggtgtcgggg tgcacccctg accagatggc aattgtgata gcgtcgcgtg tgacggtatt
     1141 acaattacac atcctgtccc gaaaattccc gccgtttctc ggttttttga gcgtcgcaga
     1201 ccgcacgaca aacgaaccta aggtgagttt gtataagtgc gcacttcgtg agattccctg
     1261 actgccagtt tgtcgattgc gcggaacggc tgcggcacga aaacggcaaa atgatttact
     1321 cgccgtttgt gtgggttgtt ttgtggggtg tcaatggggt tgtggtcttt tttgtgggtt
     1381 aaagtgtggg tgattgtgtg ggctgtgtgt tttgagttgt gggtgattat gtgggtcatt
     1441 gtgtgggctg tatgcacggc atttttttgt tctcctaaaa cacaggcacg ataagcggcg
     1501 tacacaaaac ggggcgtttc gctccgtcgc ttgtgccaaa ggggacaccc ctttgcaacc
     1561 ctgtgcggtt ctacgaacct ggtcaggact gcgccccgac accccgccaa cgcctcacgg
     1621 tacgcgaaaa aattccgcgt accgttcacc gttccctgat tcgtcaaaca gaaaatcgcg
     1681 ggggcccgcg cctccggcgt gggttccgat tttgtgattg acgacggcac gggaaaaaca
     1741 ctggggatgg tggttggtgt cacgcagtga ggccaaccac ctgcaagacg gttttttttg
     1801 ttgttcacaa aatcggggtg aaagtctgtg gatgagatgg gtgtaagtgg gtggggttgg
     1861 gtgttttggg tgactgaaaa tcccgctcaa aattcaagcg aatctcgcgc gcgatccttg
     1921 tatttatact taagggataa ctctaggatt caaattcgcc tccagccctt gtgccgcaag
     1981 gcctgaaggg ggatttgtcg gaaaatggtt ttggagttat tctgtcggga gtggtcgcat
     2041 taaaagcgac ccccgcaacg agggcaatcg ttcgggggtg tgaccacctg taggaa
//
