LOCUS       NZ_CP012017             2895 bp    DNA     circular CON 03-MAR-2024
DEFINITION  Staphylococcus aureus strain Gv88 plasmid pGv88, complete sequence.
ACCESSION   NZ_CP012017
VERSION     NZ_CP012017.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03835488
            Assembly: GCF_001515705.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2895)
  AUTHORS   Botelho,A.M.N., Costa,M.O., Beltrame,C.O., Ferreira,F.A.,
            Lima,N.C.B., Souza,R.C., de Almeida,L.G.P., Vasconcelos,A.T.R.,
            Nicolas,M.F. and Figueiredo,A.M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2015) Labinfo, LNCC - Laboratorio Nacional de
            Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ
            25651070, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Newbler v. 2.5
            Genome Coverage                   :: 32x
            Sequencing Technology             :: 454
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/03/2024 08:28:45
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,024
            CDSs (total)                      :: 2,947
            Genes (coding)                    :: 2,817
            CDSs (with protein)               :: 2,817
            Genes (RNA)                       :: 77
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 83 of 130
            Pseudo Genes (incomplete)         :: 40 of 130
            Pseudo Genes (internal stop)      :: 24 of 130
            Pseudo Genes (multiple problems)  :: 17 of 130
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP012017.1.
            Source bacteria available from the CMRVS public collection at
            Fundacao Oswaldo Cruz.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2895
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Gv88"
                     /isolation_source="From patient with wound infection"
                     /db_xref="taxon:1280"
                     /plasmid="pGv88"
                     /geo_loc_name="Brazil: Teresina, PI"
                     /collection_date="1997"
     gene            47..970
                     /locus_tag="SAGV88_RS00005"
                     /old_locus_tag="SAGV88_03146"
     CDS             47..970
                     /locus_tag="SAGV88_RS00005"
                     /old_locus_tag="SAGV88_03146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000417606.1"
                     /translation="MEKYTEKKQRNQVFQKFIKRHIGENQMDLVEDCNTFLSFVADKTL
                     EKQKLYKANSCKNRFCPVCAWRKARKDALGLSLMMQYIKQQEKKEFIFLTLTTPNVMSD
                     ELENEIKRYNNSFRKLIKRKKVGSVIKGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYF
                     TDKRYYISQQEWLDLWRDVTGISEITQVQVQKIRQNNNKELYEMAKYSGKDSDYLINQK
                     VFDAFYKSLKGKQVLVYSGLFKEAKKKLKNGDLDYLKEIDPTEYIYQIFYIWKQKEYLA
                     SELYDLTEQEKREINHKMIDEIEEEQ"
                     /name="protein rep"
     gene            complement(1766..2485)
                     /gene="catA"
                     /locus_tag="SAGV88_RS00010"
                     /old_locus_tag="SAGV88_03144"
                     /pseudo=""
     ARG             complement(1839..2485)
                     /name="catA"
                     /gene="catA"
                     /gene_name="type A-9 chloramphenicol O-acetyltransferase"
                     /tool="amrfinderplus"
                     /drug_class="PHENICOL"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(1836..2485)
                     /name="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene_name="chloramphenicol acetyltransferase (CAT)"
                     /tool="rgi"
                     /drug_class="phenicol antibiotic"
                     /identity="94.91"
                     /coverage="100.0"
     Typing          36..970
                     /name="rep_cluster_1230"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tattgtcata gtttgtgaaa actaagttgt ttttatgtgt tataacatgg aaaagtatac
       61 tgagaaaaaa caaagaaatc aagtatttca gaaatttatt aaacgtcata ttggagagaa
      121 tcaaatggat ttagttgaag attgcaatac atttctgtct tttgtagctg ataaaacttt
      181 agaaaaacag aaattatata aagctaattc ttgtaaaaat cgattttgtc ctgtctgtgc
      241 ttggagaaaa gctagaaaag atgcattggg tttatctttg atgatgcaat atattaagca
      301 gcaagagaaa aaggagttta tctttttaac tttgactaca cctaatgtaa tgagtgatga
      361 attagaaaat gaaataaaac gttataataa ttcttttaga aaacttataa agagaaaaaa
      421 agtaggtagt gttataaagg gatatgttcg taagttagag attacatata ataaaaaaag
      481 agatgattat aatcctcatt ttcatgtgtt aattgcagta aataaatcgt atttcacaga
      541 taaaagatat tatattagcc aacaagaatg gttagattta tggcgtgatg taacgggcat
      601 ttcagaaata acacaagttc aagttcaaaa aataagacaa aataataata aagaattata
      661 tgaaatggct aagtattctg gtaaagatag tgattattta ataaatcaaa aagtctttga
      721 tgcattttat aaatcactta aaggtaaaca ggtattagtt tattcaggat tatttaaaga
      781 ggctaaaaag aaattaaaaa atggggattt agattactta aaagaaattg atccaaccga
      841 atatatctat caaatttttt atatttggaa acaaaaagag tatttagcta gtgaacttta
      901 tgacttaaca gaacaagaaa aaagagaaat taatcacaaa atgatagacg aaatcgagga
      961 agaacaataa caaaatataa gtgctaacag ctgacctccc gataacacca tgtagttatt
     1021 gggaggtcag ctgttgaatt atgcacgagt attttaaaag ttattgtgat gacgacgata
     1081 aacgattatc aaaagtataa tgttaaaatg ctttattata ctaacgttat ataaacatta
     1141 tactttcgtt atacaaattt taaccctgtt aggaactata aaaaatcatg aaaattttaa
     1201 tttgcatgta actgggcagt gtcttaaaaa atcgacactg aatttgctca aatttttgtt
     1261 tgtagaatta gaatatattt atttggctca tatttgcttt ttaaaagctt ctgtaggttt
     1321 ttaggcataa aactatatga tttaccccta aatctttaaa atgcccctta aaattcaaaa
     1381 taaaggcatt taaaatttaa atatttcttg tgataaagtt tgttaaaaag gagtggtttt
     1441 atgactgtta tgtggttatc gattataggt atgtggtttt gtattggaat ggcatttttt
     1501 gctatcaagg ttattaaaaa taaaaattag accacgcatt tatgccgaga aaatttattg
     1561 tgcgttgaga agaaccctta actaaacttg cagacgaatg tcggcatagc gtgagctatt
     1621 aagccgacca ttcgacaagt tttgggattg ttaagggttc cgaggctcaa cgtcaataaa
     1681 gcaattggaa taaagaagcg aaaaaggaga agtcggttca gaaaaagaag gatatggatc
     1741 tggagctgta atataaaaac cttcttcaac taacggggca ggttagtgac attagaaaac
     1801 cgactgtaaa aagtacagtc ggcattatct catattataa aagccagtca ttaggcctat
     1861 ctgacaattc ctgaatagag ttcataaaca atcctgcatg ataaccatca caaacagaat
     1921 gatgtacctg taaagatagc ggtaaatata ttgaattacc tttattaatg aattttcctg
     1981 ctgtaataat gggtagaagg taattactat tattattgat atttaagtta aacccagtaa
     2041 atgaagtcca tggaataata gaaagagaaa aagcattttc aggtataggt gttttgggaa
     2101 acaatttccc cgaaccatta tatttctcta catcagaaag gtataaatca taaaactctt
     2161 tgaagtcatt ctttacagga gtccaaatac cagagaatgt tttagataca ccatcaaaaa
     2221 ttgtataaag tggctctaac ttatcccaat aacctaactc tccgtcgcta ttgtaaccag
     2281 ttctaaaagc tgtatttgag tttatcaccc ttgtcactaa gaaaataaat gcagggtaaa
     2341 atttatatcc ttcttgtttt atgtttcggt ataaaacact aatatcaatt tctgtggtta
     2401 tactaaaagt cgtttgttgg ttcaaataat gattaaatat ctcttttctc ttccaattgt
     2461 ctaaatcaat tttattaaag ttcatttgat atgcctccta aatttttatc taaagtgaat
     2521 ttaggaggct tacttgtctg ctttcttcat tagaatcaat ccttttttaa aagtcaatat
     2581 tactgtaaca taaatatata ttttaaaaat atcccacttt atccaatttt cgtttgttga
     2641 actaatgggt gctttagttg aagaataaaa gaccacatta aaaaatgtgg tcttttgtgt
     2701 ttttttaaag gatttgagcg tagcgaaaaa tccttttctt tcttatcttg ataataaggg
     2761 taactattgc cggcgaggct agttaccctt aagttattgg tatgactggt tttaagcgca
     2821 aaaaaagttg cttttcgtac ctattaatgt atcgttttaa atgactagta aaaacataca
     2881 tagaaagggg aaaaa
//
