LOCUS       NZ_CP012016             2903 bp    DNA     circular CON 03-MAR-2024
DEFINITION  Staphylococcus aureus strain Gv51 plasmid pGv51, complete sequence.
ACCESSION   NZ_CP012016
VERSION     NZ_CP012016.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03835466
            Assembly: GCF_001515665.1
KEYWORDS    RefSeq.
SOURCE      Staphylococcus aureus
  ORGANISM  Staphylococcus aureus
            Bacteria; Bacillota; Bacilli; Bacillales; Staphylococcaceae;
            Staphylococcus.
REFERENCE   1  (bases 1 to 2903)
  AUTHORS   Botelho,A.M.N., Costa,M.O., Beltrame,C.O., Ferreira,F.A.,
            Lima,N.C.B., Souza,R.C., de Almeida,L.G.P., Vasconcelos,A.T.R.,
            Nicolas,M.F. and Figueiredo,A.M.S.
  TITLE     Direct Submission
  JOURNAL   Submitted (02-JUL-2015) Labinfo, LNCC - Laboratorio Nacional de
            Computacao Cientifica, Rua Getulio Vargas 333, Petropolis, RJ
            25651070, Brazil
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Newbler v. 2.5
            Genome Coverage                   :: 22x
            Sequencing Technology             :: 454
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/03/2024 08:34:17
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,027
            CDSs (total)                      :: 2,947
            Genes (coding)                    :: 2,806
            CDSs (with protein)               :: 2,806
            Genes (RNA)                       :: 80
            rRNAs                             :: 6, 5, 5 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 5, 5 (5S, 16S, 23S)
            tRNAs                             :: 60
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 141
            CDSs (without protein)            :: 141
            Pseudo Genes (ambiguous residues) :: 0 of 141
            Pseudo Genes (frameshifted)       :: 96 of 141
            Pseudo Genes (incomplete)         :: 39 of 141
            Pseudo Genes (internal stop)      :: 24 of 141
            Pseudo Genes (multiple problems)  :: 17 of 141
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP012016.1.
            Source bacteria available from the CMRVS public collection at
            Fundacao Oswaldo Cruz.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2903
                     /organism="Staphylococcus aureus"
                     /mol_type="genomic DNA"
                     /strain="Gv51"
                     /isolation_source="From patient with pneumonia"
                     /db_xref="taxon:1280"
                     /plasmid="pGv51"
                     /geo_loc_name="Brazil: Teresina, PI"
                     /collection_date="1997"
     gene            34..957
                     /locus_tag="SAGV51_RS15420"
                     /old_locus_tag="SAGV51_04017"
     CDS             34..957
                     /locus_tag="SAGV51_RS15420"
                     /old_locus_tag="SAGV51_04017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002499696.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000417606.1"
                     /translation="MEKYTEKKQRNQVFQKFIKRHIGENQMDLVEDCNTFLSFVADKTL
                     EKQKLYKANSCKNRFCPVCAWRKARKDALGLSLMMQYIKQQEKKEFIFLTLTTPNVMSD
                     ELENEIKRYNNSFRKLIKRKKVGSVIKGYVRKLEITYNKKRDDYNPHFHVLIAVNKSYF
                     TDKRYYISQQEWLDLWRDVTGISEITQVQVQKIRQNNNKELYEMAKYSGKDSDYLINQK
                     VFDAFYKSLKGKQVLVYSGLFKEAKKKLKNGDLDYLKEIDPTEYIYQIFYIWKQKEYLA
                     SELYDLTEQEKREINHKMIDEIEEEQ"
                     /name="protein rep"
     gene            complement(1753..2472)
                     /gene="catA"
                     /locus_tag="SAGV51_RS15425"
                     /old_locus_tag="SAGV51_04018"
                     /pseudo=""
     ARG             complement(1826..2472)
                     /name="catA"
                     /gene="catA"
                     /gene_name="type A-9 chloramphenicol O-acetyltransferase"
                     /tool="amrfinderplus"
                     /drug_class="PHENICOL"
                     /identity="100.0"
                     /coverage="100.0"
     ARG             complement(1823..2472)
                     /name="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene="Streptococcus suis chloramphenicol
                     acetyltransferase"
                     /gene_name="chloramphenicol acetyltransferase (CAT)"
                     /tool="rgi"
                     /drug_class="phenicol antibiotic"
                     /identity="94.91"
                     /coverage="100.0"
     Typing          23..957
                     /name="rep_cluster_1230"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgtgaaaact aagttgtttt tatgtgttat aacatggaaa agtatactga gaaaaaacaa
       61 agaaatcaag tatttcagaa atttattaaa cgtcatattg gagagaatca aatggattta
      121 gttgaagatt gcaatacatt tctgtctttt gtagctgata aaactttaga aaaacagaaa
      181 ttatataaag ctaattcttg taaaaatcga ttttgtcctg tctgtgcttg gagaaaagct
      241 agaaaagatg cattgggttt atctttgatg atgcaatata ttaagcagca agagaaaaag
      301 gagtttatct ttttaacttt gactacacct aatgtaatga gtgatgaatt agaaaatgaa
      361 ataaaacgtt ataataattc ttttagaaaa cttataaaga gaaaaaaagt aggtagtgtt
      421 ataaagggat atgttcgtaa gttagagatt acatataata aaaaaagaga tgattataat
      481 cctcattttc atgtgttaat tgcagtaaat aaatcgtatt tcacagataa aagatattat
      541 attagccaac aagaatggtt agatttatgg cgtgatgtaa cgggcatttc agaaataaca
      601 caagttcaag ttcaaaaaat aagacaaaat aataataaag aattatatga aatggctaag
      661 tattctggta aagatagtga ttatttaata aatcaaaaag tctttgatgc attttataaa
      721 tcacttaaag gtaaacaggt attagtttat tcaggattat ttaaagaggc taaaaagaaa
      781 ttaaaaaatg gggatttaga ttacttaaaa gaaattgatc caaccgaata tatctatcaa
      841 attttttata tttggaaaca aaaagagtat ttagctagtg aactttatga cttaacagaa
      901 caagaaaaaa gagaaattaa tcacaaaatg atagacgaaa tcgaggaaga acaataacaa
      961 aatataagtg ctaacagctg acctcccgat aacaccatgt agttattggg aggtcagctg
     1021 ttgaattatg cacgagtatt ttaaaagtta ttgtgatgac gacgataaac gattatcaaa
     1081 agtataatgt taaaatgctt tattatacta acgttatata aacattatac tttcgttata
     1141 caaattttaa ccctgttagg aactataaaa aatcatgaaa attttaattt gcatgtaact
     1201 gggcagtgtc ttaaaaaatc gacactgaat ttgctcaaat ttttgtttgt agaattagaa
     1261 tatatttatt tggctcatat ttgcttttta aaagcttctg taggttttta ggcataaaac
     1321 tatatgattt acccctaaat ctttaaaatg ccccttaaaa ttcaaaataa aggcatttaa
     1381 aatttaaata tttcttgtga taaagtttgt taaaaaggag tggttttatg actgttatgt
     1441 ggttatcgat tataggtatg tggttttgta ttggaatggc attttttgct atcaaggtta
     1501 ttaaaaataa aaattagacc acgcatttat gccgagaaaa tttattgtgc gttgagaaga
     1561 acccttaact aaacttgcag acgaatgtcg gcatagcgtg agctattaag ccgaccattc
     1621 gacaagtttt gggattgtta agggttccga ggctcaacgt caataaagca attggaataa
     1681 agaagcgaaa aaggagaagt cggttcagaa aaagaaggat atggatctgg agctgtaata
     1741 taaaaacctt cttcaactaa cggggcaggt tagtgacatt agaaaaccga ctgtaaaaag
     1801 tacagtcggc attatctcat attataaaag ccagtcatta ggcctatctg acaattcctg
     1861 aatagagttc ataaacaatc ctgcatgata accatcacaa acagaatgat gtacctgtaa
     1921 agatagcggt aaatatattg aattaccttt attaatgaat tttcctgctg taataatggg
     1981 tagaaggtaa ttactattat tattgatatt taagttaaac ccagtaaatg aagtccatgg
     2041 aataatagaa agagaaaaag cattttcagg tataggtgtt ttgggaaaca atttccccga
     2101 accattatat ttctctacat cagaaaggta taaatcataa aactctttga agtcattctt
     2161 tacaggagtc caaataccag agaatgtttt agatacacca tcaaaaattg tataaagtgg
     2221 ctctaactta tcccaataac ctaactctcc gtcgctattg taaccagttc taaaagctgt
     2281 atttgagttt atcacccttg tcactaagaa aataaatgca gggtaaaatt tatatccttc
     2341 ttgttttatg tttcggtata aaacactaat atcaatttct gtggttatac taaaagtcgt
     2401 ttgttggttc aaataatgat taaatatctc ttttctcttc caattgtcta aatcaatttt
     2461 attaaagttc atttgatatg cctcctaaat ttttatctaa agtgaattta ggaggcttac
     2521 ttgtctgctt tcttcattag aatcaatcct tttttaaaag tcaatattac tgtaacataa
     2581 atatatattt taaaaatatc ccactttatc caattttcgt ttgttgaact aatgggtgct
     2641 ttagttgaag aataaaagac cacattaaaa aatgtggtct tttgtgtttt tttaaaggat
     2701 ttgagcgtag cgaaaaatcc ttttctttct tatcttgata ataagggtaa ctattgccgg
     2761 cgaggctagt tacccttaag ttattggtat gactggtttt aagcgcaaaa aaagttgctt
     2821 tttcgtacct attaatgtat cgttttaaat gactagtaaa aacatacata gaaaggggaa
     2881 aagcaacttt tattgtcata gtt
//
