LOCUS       NZ_CP011945             2096 bp    DNA     circular CON 05-MAR-2024
DEFINITION  Salmonella enterica subsp. enterica serovar Enteritidis strain
            OLF-00D989 87-1 plasmid small, complete sequence.
ACCESSION   NZ_CP011945
VERSION     NZ_CP011945.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03328998
            Assembly: GCF_001647045.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Enteritidis (Salmonella
            enteritidis)
  ORGANISM  Salmonella enterica subsp. enterica serovar Enteritidis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ogunremi,D., Belanger,S., Dupras,A.A. and Omidi,K.
  TITLE     Whole genome analysis of the three isolates of Salmonella
            Enteritidis with phage types 8, 10 and 23 obtained from a common
            source
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Ogunremi,D., Belanger,S., Dupras,A.A. and Omidi,K.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-JUN-2015) Ottawa Laboratory Fallowfield, Canadian Food
            Inspection Agency, 3851 Fallowfield Road, Ottawa, Ontario K2H 8P9,
            Canada
COMMENT     ##Assembly-Data-START##
            Assembly Method                   :: CLC Genomics v. Workbench 7
            Sequencing Technology             :: Illumina
            ##Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 03/04/2024 12:00:54
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,627
            CDSs (total)                      :: 4,507
            Genes (coding)                    :: 4,341
            CDSs (with protein)               :: 4,341
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 15
            Pseudo Genes (total)              :: 166
            CDSs (without protein)            :: 166
            Pseudo Genes (ambiguous residues) :: 0 of 166
            Pseudo Genes (frameshifted)       :: 78 of 166
            Pseudo Genes (incomplete)         :: 111 of 166
            Pseudo Genes (internal stop)      :: 33 of 166
            Pseudo Genes (multiple problems)  :: 48 of 166
            Pseudo Genes (short protein)      :: 1 of 166
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP011945.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Salmonella enterica subsp. enterica serovar
                     Enteritidis"
                     /mol_type="genomic DNA"
                     /strain="OLF-00D989 87-1"
                     /serovar="Enteritidis"
                     /isolation_source="Poultry environment"
                     /sub_species="enterica"
                     /db_xref="taxon:149539"
                     /plasmid="small"
                     /note="phage type 10"
     gene            88..1077
                     /locus_tag="TV13_RS23025"
                     /old_locus_tag="TV13_23025"
     CDS             88..1077
                     /locus_tag="TV13_RS23025"
                     /old_locus_tag="TV13_23025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_064079801.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVTETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1080..1161
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(804..995)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 ttcgaattgg tgatacgact aacacaacag gtgatatggc aatgataaca cgtcagatga
       61 gccatcgccc actatcgggt ggtgcgcatg aaaaaccctg atctccagaa cctcacggac
      121 tattccccct cagatgcgcc ctgggacgct cacagaagcg tttctgatga cgtgggaggg
      181 atttacctgc ttgcagccga atatgagcgc tacggggcgc gtatggccct ctgtggtggt
      241 ttactgcgtt tcgggtggtc taccctcaag gaaaccggag aaacgcgtct gaggctgcgt
      301 gaggcgcatt tctgccgtgt ccggcattgt cctgtctgcc agtggaggcg ctccctgatg
      361 tggcaagccc gtttctacca gtccctgccg cgtatcgtgg cggattatcc cgatgcccgc
      421 tggatgttcc tgactctgac cgtgcgcaac tgtgcgatcg gggagctggg cgagatgctg
      481 aaccggatga atgcagcttt tcagcgcatg aaggttcgca aggagttccg gcctgtgcag
      541 ggctggatac gtaccacgga agtcacccgc gggagcgacg gcagcgcaca cccgcacttc
      601 cacaccctga tgatggtgcc gcctggcatg ctaaatggga aaagttacgt caggcatgaa
      661 cgctgggttg aactctggcg ggagtgtctg cgggtcgatt atgacccgaa tgttgatgtc
      721 cgggcagtga aacctcgtaa gccgaagggc ggcgaatcgc tggcctgcgc gaccgccgaa
      781 ctggtgcgcg gtgcggtgac cgaaaccctg aaatattcca cgaagccggc tgacatggtg
      841 gccgatcctg aatggttcct cgaactgacc cgccagacgc acaagcgccg ctttgtggcg
      901 accggcggcg cactcaaaga cgtgctgaaa ctcgatcagg aaactgacgc cgacatggtg
      961 atcggtgatg atatttccga gggcgacgat gacggttcac gaatcgcgtt cgagtggaaa
     1021 accgaggtca gaaagtaccg tcgctcaccg acgaaagata aaactgaatc aggctagcgg
     1081 ggtgtcgggg tgcacccctg accagatggc aattgtgata gcgtcgcgtg tgacggtatt
     1141 acaattacac atcctgtccc gaaaattccc gccgtttctc ggttttttga gcgtcgcaga
     1201 ccgcacgaca aacgaaccta aggtgagttt gtataagtgc gcacttcgtg agattccctg
     1261 actgccagtt tgtcgattgc gcggaacggc tgcggcacga aaacggcaaa atgatttact
     1321 cgccgtttgt gtgggttgtt ttgtggggtg tcaatggggt tgtggtcttt tttgtgggtt
     1381 aaagtgtggg tgattgtgtg ggctgtgtgt tttgagttgt gggtgattat gtgggtcatt
     1441 gtgtgggctg tatgcacggc atttttttgt tctcctaaaa cacaggcacg ataagcggcg
     1501 tacacaaaac ggggcgtttc gctccgtcgc ttgtgccaaa ggggacaccc ctttgcaacc
     1561 ctgtgcggtt ctacgaacct ggtcaggact gcgccccgac accccgccaa cgcctcacgg
     1621 aacgcgaaaa aattccgcgt accgttcacc gttccctgat tcgtcaaaca gaaaatcgcg
     1681 ggggcccgcg cctccggcgt gggttccgat tttgtgattg acgacggcac gggaaaaaca
     1741 ctggggatgg tggttggtgt cacgcagtga ggccaaccac ctgcaagacg gttttttttg
     1801 ttgttcacaa aatcggggtg aaagtctgtg gatgagacgg gtgtaagtgg gtggggttgg
     1861 gtgttttggg tgactgaaaa tcccgctcaa aattcaagcg aatctcgcgc gcgatccttg
     1921 tatttatact taagggataa ctctaggatt caaattcgcc tccagccctt gtgccgcaag
     1981 gcctgaaggg ggatttgtcg gaaaatggtt ttggagttat tctgtcggga gtggtcgcat
     2041 taaaagcgac ccccgcaacg agggcaatcg ttcgggggtg tgaccacctg taggaa
//
