LOCUS       NZ_CP010367             5413 bp    DNA     circular CON 07-FEB-2024
DEFINITION  Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid
            p34978-5.413kb, complete sequence.
ACCESSION   NZ_CP010367
VERSION     NZ_CP010367.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03067415
            Assembly: GCF_000807405.2
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei subsp. xiangfangensis (Enterobacter
            xiangfangensis)
  ORGANISM  Enterobacter hormaechei subsp. xiangfangensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 5413)
  AUTHORS   Chavda,K.D., Chen,L., Fouts,D.E., Sutton,G., Brinkac,L.,
            Jenkins,S.G., Bonomo,R.A., Adams,M.D. and Kreiswirth,B.N.
  TITLE     Comprehensive Genome Analysis of Carbapenemase-Producing
            Enterobacter spp.: New Insights into Phylogeny, Population
            Structure, and Resistance Mechanisms
  JOURNAL   mBio 7 (6), e02093-16 (2016)
   PUBMED   27965456
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5413)
  AUTHORS   McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G.,
            Kreiswirth,B. and Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2015) JCVI, 9704 Medical Center Drive, Rockville,
            MD 20850, USA
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 5413)
  AUTHORS   McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G.,
            Kreiswirth,B. and Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2014) JCVI, 9704 Medical Center Drive, Rockville,
            MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 3
            Assembly Name :: HGAP assembly of Enterobacter cloacae 34978
            Expected Final Version            :: Yes
            Genome Coverage                   :: 7.78x
            Sequencing Technology             :: Pacbio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/07/2024 01:42:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,071
            CDSs (total)                      :: 4,956
            Genes (coding)                    :: 4,848
            CDSs (with protein)               :: 4,848
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 39 of 108
            Pseudo Genes (incomplete)         :: 70 of 108
            Pseudo Genes (internal stop)      :: 20 of 108
            Pseudo Genes (multiple problems)  :: 20 of 108
            Pseudo Genes (short protein)      :: 1 of 108
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP010367.1.
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter hormaechei subsp. oharae' in June 2016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5413
                     /organism="Enterobacter hormaechei subsp. xiangfangensis"
                     /mol_type="genomic DNA"
                     /strain="34978"
                     /isolation_source="bodily fluid"
                     /host="Homo sapiens"
                     /sub_species="xiangfangensis"
                     /db_xref="taxon:1296536"
                     /plasmid="p34978-5.413kb"
                     /geo_loc_name="USA"
                     /collection_date="2011"
                     /collected_by="Barry Kreiswirth"
     gene            complement(<450..1154)
                     /locus_tag="LI63_RS27385"
                     /pseudo=""
     CDS             complement(<450..1154)
                     /locus_tag="LI63_RS27385"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(1093..1416)
                     /locus_tag="LI63_RS01325"
                     /old_locus_tag="LI63_01515"
     CDS             complement(1093..1416)
                     /locus_tag="LI63_RS01325"
                     /old_locus_tag="LI63_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000957084.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQICLDEKPARSGKLPSL
                     SPALLRQLAGMGNNLNQIARRVNAGGGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            complement(2668..2949)
                     /locus_tag="LI63_RS01340"
                     /old_locus_tag="LI63_01535"
     CDS             complement(2668..2949)
                     /locus_tag="LI63_RS01340"
                     /old_locus_tag="LI63_01535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000594459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_000594459.1"
                     /translation="MIKNIKHKGLRSFAENGNTAGIQPHLAKKLRMILTTLSTATCLQD
                     IVDVRALGCHPLKGERKGEFSVEVNGNWRVVFKVEEPNVLDVDLEDYH"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            3341..3580
                     /locus_tag="LI63_RS01345"
                     /old_locus_tag="LI63_01540"
     CDS             3341..3580
                     /locus_tag="LI63_RS01345"
                     /old_locus_tag="LI63_01540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000609270.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antitoxin"
                     /protein_id="WP_164525734.1"
                     /translation="MEPFEIPAAELADKLEVSQSALSRLLNGKTDLSYEMALRLSKVIG
                     RSAESWVNMQAQYSLSKSRKTLSETLEHLHPMFP"
                     /name="HigA family addiction module antitoxin"
     gene            complement(4752..4916)
                     /locus_tag="LI63_RS26905"
     CDS             complement(4752..4916)
                     /locus_tag="LI63_RS26905"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_164088320.1"
                     /translation="MKLLNVIEALLNCLYLAAELWDWLEKHLPVFKALALILVWLYTPC
                     IWLHGYAVG"
                     /name="hypothetical protein"
     gene            complement(5113..5330)
                     /locus_tag="LI63_RS26910"
                     /pseudo=""
     CDS             complement(5113..5330)
                     /locus_tag="LI63_RS26910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          complement(1530..1703)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.857"
                     /coverage="100.0"
                     /evalue="5.54e-83"
     Typing          1627..2214
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="91.709"
                     /coverage="97.0"
                     /evalue="0.0"
     Typing          complement(4..1103)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.185"
                     /coverage="89.0"
                     /evalue="0.0"
ORIGIN
        1 gaaacctccg gccgtcgctg ctctcctgat agcgcactcc ccacgtccgg gcggtcattt
       61 tcgccagggt atcttcctgc tgacgaagat gcgtgtaatt gtcggttatc tgctgcccct
      121 gccaccacag aatgctcccg ctcgtgccga tcagcagcgc tgacaccatc aggatggtga
      181 gccatgtccg cccggcagtc cgcagtacgc tccgccggtt tttctccatc gcctcgctca
      241 tactctgctc gtgggcgagg atggcgtcgc tgattctcct cgcgcttgcg ctcagttccg
      301 ctctgacaga ctgctcgtgc tcgctgaatg cggctttcag catctcgccg gtactctgct
      361 gctgcgcttt cgattgctgc tctaagtcct tcgccagcgt taaaagactg ctcatagatg
      421 gctcccttga gtcggatgtt tcgccccccg tccgggtcgg caatgctgat actgcttttc
      481 gtggtgcgca ccacctcaaa acctgcacct tcaagagtgt cagtgacatc ctgacggctt
      541 ttcagctccc cggacgaagc aagggtcagc agtccccggg taatggcttc tgcggcctcc
      601 tgcttcgttt tcggcagccc ggacggcgtg accagcgccc ggcggttttc cggcgcgttc
      661 gggtcgtgca gccccagtct gccgttcacg atagtctgcc aggcatcgat gcgcggccgg
      721 tcggcgcggt cgtagtaagg ctggagccgc ctgccggtca gcagctcggt attggggatc
      781 agaaagttca gctccagacg ccccttgtcc gcgtgctcca cccacagaat gctgtactga
      841 tctttatcga gtccgggcat cagaacccgc tcgaagctgg ccatcagttt ttcccgctgg
      901 ccgggaggca gatcggcctc cgcaaacgac agaacgccgg aggtgtattt cttaacgtaa
      961 ggcgacgcgt caatcagctc ccggacttct tccggcttcc cctgcaggac ggtggcgcct
     1021 tcacgctgcc ggtctttacc cagcagatag tccaccggcc cggcgccacc gccgcggccg
     1081 cgcggatgaa atttaacgat catcgtccgt tcctttctca agaacggcgt gccgcagccg
     1141 ctcaaggccg gcatcgatgg ccatcagcgc cgccacaatc tgtaccctgt catggccggt
     1201 gccgccgccg gcgttaacac ggcgggctat ctggttcagg ttattgccca tgccggcaag
     1261 ctggcgcagc agcgccggcg agagtgaggg gagctttccg gaacgtgccg gcttttcgtc
     1321 caggcagatc tgccgcatcc acgccgccag ctgcctgccg tcacagcgct cgagcagccg
     1381 ccggtgctcg tcctccgtca cccacatggt gagcatcttg ctccgtttct ctgacaaacc
     1441 ggcctcctga taacgccggg acgggcggga aagcctttcc cggtcggcgc ggggttggac
     1501 aagccgcagg cgcgtcaggc ttttggcggg tttcggggcg cagccctgaa ccagtcacgt
     1561 agcgctagcg gagtgtatac tggcttacta tgttggcacg gatgagggtg tcagtgaagt
     1621 gcttcatgtg gcaggagaaa aaaggcggca ccggtgcgtc agcagaatat gtgatacagg
     1681 atatattccg cttcctcgct cactgactcg ctgcgctcgg tcgttcggct gcggcgagcg
     1741 gaaatggctt acgaacgggg cggaaatttc ctggaggatg ccaggaagaa gcttaacagg
     1801 gaagcgagaa ggccacggca aagccgtttt tccataggct ccgcccccct gacaagcatc
     1861 acgaaatctg acgctcaaat cagtggtggc gaaacccgac aggactataa agataccagg
     1921 cgtttccccc tggtggctcc ctcgtgcgct ctcctgttcc tgcctttcgg tttaccggtg
     1981 tcactccgct gttatggccg cgtttatctc attccacgcc tgacactcag ttccgggaag
     2041 gcagttcgct ccaagctgga ctgtatgcac gaaccccccg ttcagtccga ccgcagcgtc
     2101 ttatccggta actatcgact tgagtccaac ccggaaagac acaacaaaac gccactggct
     2161 gcggccattg gtaagagggt gtacaagaga ttactgatgc agagttcttg aagtcagagc
     2221 catactgagg ctaaactgga aggacagaat ttggtttcag cggtcttgta caccctgtta
     2281 ccacggttca gaagttcccc aacttactga accctcgaaa aaaccgcctc cccaggcggt
     2341 tttttcgttt cgaacataag atacgctttg tcgatttaat cagtcaagga agaaccctga
     2401 aagcctcaat cgcttacaga attattcttg ttagagacat gtttctgcac cgtatcaaca
     2461 ccagtacaca aaacagctgc aaacaggaac catccccacc catctaggcc acgaacagca
     2521 agaaccccag caatgactac acaaagcaaa gggaacaaca aaatcataaa ggctctcata
     2581 aatcctccag aggtacttat ttttgaataa agtccctaat ccatccatat tgccactagg
     2641 atggattagt aacttactta ttgattacta atggtaatct tcaagatcaa cgtctaagac
     2701 gtttggttct tccaccttga aaaccaccct ccagtttccg ttaacctcta cggaaaactc
     2761 acctttacgt tcacctttta gggggtgaca ccccagcgcc cttacatcca caatatcttg
     2821 aagacatgtt gcggtgctta gcgtagtcaa tatcatgcga agttttttcg ctaagtgagg
     2881 ctgaattccg gcggtgttac cgttttcagc aaaactccga agccctttat gctttatgtt
     2941 ttttatcatc aatcatctcc ataaaatttt cgtcgatatc tatctctata aacagaaaac
     3001 aatttgacag cgtccatttg aaccccttgc attattaaaa taattgacgt aactttgtct
     3061 ctgaggtcga ttacctcgtt tgacttccaa gagcgctaac cgtacaatat ggcgccttga
     3121 aaaagtcggt aaagacacca tatcagcggt agctttctgc tccaccgagc atcctaaagc
     3181 ttactgcttt ttttgtcaat aacagacact tgcgtattgt gcaatgcgca acgcgaaaga
     3241 aacaaaatgt tttgtgtaat caaatacaaa accaatagag gaaggcatga taaatcttta
     3301 cgatcctgta caccccggtg aattcatcag ggaaatgttc atggaaccgt tcgaaatacc
     3361 tgccgcagag ttagctgata agcttgaagt atcacaatct gcattaagta gattgctcaa
     3421 tggaaaaact gatcttagtt atgagatggc tcttcgacta tctaaagtta taggccgctc
     3481 tgcagagtcg tgggttaata tgcaggctca gtacagcctc tcgaaaagtc gtaagacttt
     3541 atccgagacg ctagaacacc ttcatccgat gtttccataa gtaaaagccc gctcgtgcgg
     3601 gctttttgcc gtaaaacccc cgcataccta cctttagttt gatttttagt tcagttctta
     3661 gatcttgaaa tgattgttgt ttgaacacca ataagatgcc catacaaggc tctaaaaagg
     3721 agaacaaaat ggcaatttat gtaggaccac atggcaaaat aggtcgtgat ggtggctcat
     3781 tccaagaatg tgacatcaac acaaacactc atactgttac ccgcaaatat ggacgatact
     3841 gcaccattcg cgataatgag ttcgcaccac caacgagcgc acctggcagg tactggctac
     3901 agatctaccg aaccccagac aacactgagt aacagaagcg ccagtaacga caaagcccgc
     3961 ataagcgggc tttgtctctt acaaaattcc tcgtcgtcgc aattcagctt ctatcgcctc
     4021 acatgcggca tccacaatct ccgtgttgta gtacctggac atgccactgc taatgatatc
     4081 gtccattagg gcacggttat gagctaaggt acgtcgtaag tattcagggg tatgttgctc
     4141 catcggattc tccttttcat gactgagcat tattgcttac ctgtatttat ccccgtcagt
     4201 gctggtcacg ttgaaaagcc ctaaaaaacc acttttttag ctgccttaat cattgaaaaa
     4261 tggcacttaa atccacatct atcgcgctgg ggaaatcgcc cgcacacagc cactgataaa
     4321 ataaaagtga gataaaatgg atccaatgga taagatttgc gatgtttgtg ccctccctgc
     4381 cagcgcctgt acctgtggct tctgcgatga ctgcaacgag aagctggcag actgcgtctg
     4441 tgagcgctgc agcgattgtg gaaatttaga tgagcactgt agctgctcac gttgcgacga
     4501 gtgcggtgaa aaactggatg agtgcatatg tgaggagtgc gaagaatgtc tccgcagtcc
     4561 acatgattgt atctgcgaaa actgacctaa ggccgaattc tctttcaaga gcgaccggga
     4621 cggtcgctct tatttaccat aacatccgtt gcccgcaccg ccccggacag cttcgccgcg
     4681 aacggggcag cagtcagcca aaaccaacaa caacccaccc ggtaaaccac cccgatcgcg
     4741 acagataaat tttacccgac tgcatagcca tgcagccaga tgcatggcgt gtaaagccac
     4801 actaaaatca gcgccaacgc cttaaaaaca ggtaaatgct tctccagcca gtcccacagc
     4861 tcggccgcca gatacaggca gttaagtaga gcttcaatga cgttaagcaa tttcataatt
     4921 tcccccaggt ataggccgtg atctttttga tcacgaacct atttagcggg agaaataaga
     4981 gcccctcttc gtgcgggttg tcagctgcct ggatggttta aagtgtcggc ccgcggtagg
     5041 ttttctgcgg ctggcgctcc agctccagtg ttttctgata ctcattctcc ctctgccgga
     5101 gctcgatggc attcagttcc cggacaagcg gcgcagctgc tcgcttaaac tcagcacctg
     5161 cgtgctcaag tccgacacgc gctcgttcag catcggcgtt ctccccgttg cataagccca
     5221 cacatgctcc gccattccgc gaaggcgctc tcccactcgt ccagcctttt cgagtagtcc
     5281 tgctgtagct gctctaatgc gctcagcaac tgtttttcca gctctgtcat tttccgctac
     5341 tcctgtttca ggcggatcca tgtcgtcccg tcgtagggga tggcttcggt ttgcatcccc
     5401 ggcggcagga taa
//
