LOCUS       NZ_CP010364             4938 bp    DNA     circular CON 07-FEB-2024
DEFINITION  Enterobacter hormaechei subsp. xiangfangensis strain 34978 plasmid
            p34978-4.938kb, complete sequence.
ACCESSION   NZ_CP010364
VERSION     NZ_CP010364.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03067415
            Assembly: GCF_000807405.2
KEYWORDS    RefSeq.
SOURCE      Enterobacter hormaechei subsp. xiangfangensis (Enterobacter
            xiangfangensis)
  ORGANISM  Enterobacter hormaechei subsp. xiangfangensis
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1  (bases 1 to 4938)
  AUTHORS   Chavda,K.D., Chen,L., Fouts,D.E., Sutton,G., Brinkac,L.,
            Jenkins,S.G., Bonomo,R.A., Adams,M.D. and Kreiswirth,B.N.
  TITLE     Comprehensive Genome Analysis of Carbapenemase-Producing
            Enterobacter spp.: New Insights into Phylogeny, Population
            Structure, and Resistance Mechanisms
  JOURNAL   mBio 7 (6), e02093-16 (2016)
   PUBMED   27965456
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4938)
  AUTHORS   McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G.,
            Kreiswirth,B. and Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-AUG-2015) JCVI, 9704 Medical Center Drive, Rockville,
            MD 20850, USA
  REMARK    Sequence update by submitter
REFERENCE   3  (bases 1 to 4938)
  AUTHORS   McCorrison,J., Sanka,R., Adams,M., Brinkac,L., Sutton,G.,
            Kreiswirth,B. and Chen,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2014) JCVI, 9704 Medical Center Drive, Rockville,
            MD 20850, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: HGAP v. 3
            Assembly Name :: HGAP assembly of Enterobacter cloacae 34978
            Expected Final Version            :: Yes
            Genome Coverage                   :: 7.78x
            Sequencing Technology             :: Pacbio RS
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 02/07/2024 01:42:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,071
            CDSs (total)                      :: 4,956
            Genes (coding)                    :: 4,848
            CDSs (with protein)               :: 4,848
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 39 of 108
            Pseudo Genes (incomplete)         :: 70 of 108
            Pseudo Genes (internal stop)      :: 20 of 108
            Pseudo Genes (multiple problems)  :: 20 of 108
            Pseudo Genes (short protein)      :: 1 of 108
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP010364.1.
            The organism was changed from 'Enterobacter cloacae' to
            'Enterobacter hormaechei subsp. oharae' in June 2016.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4938
                     /organism="Enterobacter hormaechei subsp. xiangfangensis"
                     /mol_type="genomic DNA"
                     /strain="34978"
                     /isolation_source="bodily fluid"
                     /host="Homo sapiens"
                     /sub_species="xiangfangensis"
                     /db_xref="taxon:1296536"
                     /plasmid="p34978-4.938kb"
                     /geo_loc_name="USA"
                     /collection_date="2011"
                     /collected_by="Barry Kreiswirth"
     gene            127..1413
                     /locus_tag="LI63_RS00825"
                     /old_locus_tag="LI63_00935"
     CDS             127..1413
                     /locus_tag="LI63_RS00825"
                     /old_locus_tag="LI63_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002437803.1"
                     /GO_process="GO:0006935 - chemotaxis [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing methyl-accepting chemotaxis
                     protein"
                     /protein_id="WP_306170312.1"
                     /translation="MFSLNLQRSAISYDAICQNKPVIEFSPEGVINKASPLFLSTMGYR
                     ADEIIGHHHRIFCPPSLVSSPEYSQFWQRLARGESFSGKYLRLAKGNRSVWLEASYIPV
                     SDRRGRVIRVIKIAADISERVHSALEQEAVVNAINRSMAIITFNPEGIVLEANENFVNA
                     TGYKRDEIIGKHHRLFCAETLYKSDEYRHFWESLNQGEFFSGLFPRLNRQGDPLWFRAT
                     YNPVFNSDGQLYKIVKFATDVTADVLRNQREQEAAVHAWDMAVQTRESAQNGANVIENS
                     ILMIDRIAQGMGAVSTDISRLNNQSESIDDMVETIRKFAMQTRLIALNAAIEAARAGAS
                     GRSFAVVAAEVRNLAASVSSATEEIEQVVASNSQLAKDVLCGIENSLMNTREGVTLMRE
                     AGEVMTSIQRNAAGVETAVKDVAISVKAG"
                     /name="PAS domain-containing methyl-accepting chemotaxis
                     protein"
     gene            2422..2745
                     /locus_tag="LI63_RS00830"
                     /old_locus_tag="LI63_00950"
     CDS             2422..2745
                     /locus_tag="LI63_RS00830"
                     /old_locus_tag="LI63_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_007899679.1"
                     /translation="MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARTAKLPSI
                     SPALLRQLAGMGNNLNQIARRVNAGVGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTD
                     DDR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2954..>3388
                     /locus_tag="LI63_RS27130"
                     /pseudo=""
     CDS             2954..>3388
                     /locus_tag="LI63_RS27130"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            3423..3914
                     /locus_tag="LI63_RS26875"
     CDS             3423..3914
                     /locus_tag="LI63_RS26875"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_016355729.1"
                     /translation="MSSLLTLAKDLEQQSKAQQKSTGEMLKAAFSEHEQSVRAELNASA
                     RRISDAISAHEQSMSEAMEKNRRSVLLTAGRTWLTILMVSALLIATSGSILWWQGRQIT
                     DNYTHLRQQEDTLAKMTARTWGVRYQESNDGRRFLILPPGMQAEAIPYDGTTWIRLKQE
                     "
                     /name="MbeB family mobilization protein"
     gene            3921..4136
                     /locus_tag="LI63_RS26880"
     CDS             3921..4136
                     /locus_tag="LI63_RS26880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137422.1"
                     /translation="MTELEKQLLSALEQLQQDYSQRLDEWESAFAEWRSMCGLMQRENA
                     VLNERVSDLSTQVLSLSEQLRRLSGN"
                     /name="MbeD family mobilization/exclusion protein"
     Typing          2135..2307
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="9.14e-86"
     Typing          complement(1664..2210)
                     /name="rep_cluster_2335"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.545"
                     /coverage="90.0"
                     /evalue="0.0"
     Typing          2423..2739
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.509"
                     /coverage="99.0"
                     /evalue="3.03e-59"
     Typing          2736..4237
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="83.692"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggctgaagag cgggcttttt cccgccctgt cgcagtaata tataacgcta cataaggagt
       61 agccgataac catggcagta cttacattat ccgggcaatc tgattcatat gttttcactt
      121 aaaaatatgt tctccctgaa cctccagcga tcagccattt cgtatgacgc aatttgtcag
      181 aataagcctg tcattgagtt cagtccggag ggggtgataa ataaagccag cccgcttttt
      241 ctctccacta tggggtacag ggctgatgaa ataatcggtc accaccatcg tatattctgc
      301 ccgccctcgc tggtaagttc accggaatac agccagttct ggcagcgcct tgccagggga
      361 gaaagcttta gtggcaagta cctgcggctg gcaaagggaa atcgttccgt atggcttgaa
      421 gccagttata tccccgtttc tgacaggcgc ggccgtgtta tcagagtcat taaaattgct
      481 gccgatattt ctgagcgcgt gcattctgct cttgagcagg aagcagtcgt aaatgccata
      541 aaccgttcta tggccatcat caccttcaat cctgaaggga tcgtgcttga agcaaatgaa
      601 aatttcgtca atgccactgg ctataagcgg gatgaaatca taggtaagca tcatcgtctg
      661 ttctgtgccg agacgcttta caaaagtgat gaataccgac atttctggga gagtctgaat
      721 caaggtgagt ttttttctgg tctgtttcca cgccttaacc gtcagggaga ccctctgtgg
      781 ttccgtgcaa cttataaccc tgtctttaac agtgatgggc agctttataa aattgtgaaa
      841 ttcgctacag atgttacggc tgatgtcctg cgaaaccaga gagagcaaga ggctgctgtg
      901 catgcatggg atatggccgt gcagacccga gaaagtgcgc agaacggtgc caatgttatt
      961 gaaaatagca tccttatgat tgacagaatt gcgcagggga tgggggctgt ctccaccgat
     1021 atctcacggc tcaacaatca gtctgaaagt attgacgata tggtggaaac catccggaag
     1081 tttgccatgc agacaagact tattgcactg aatgccgcga ttgaagcagc aagggctggc
     1141 gcatccggaa gaagttttgc ggttgttgcc gcagaagtgc gtaatcttgc ggcgagcgtc
     1201 agtagcgcga ctgaagaaat tgagcaagtc gtggccagca atagtcaact ggccaaggat
     1261 gttctctgtg gcattgaaaa cagcctgatg aacactcggg aaggggttac actcatgcgc
     1321 gaagcgggtg aagttatgac cagcattcag aggaatgctg caggggttga gactgcggtt
     1381 aaggatgtcg ccatttcagt taaagccgga taggccatgg tgcatatccc catatctgtc
     1441 gaacatcaca gatgatcttc ttgagatcct ttccgttgcg tcgtaatctc ttgctctgaa
     1501 aacgaaaaaa ccacccggca aggtggcttt ttcgaaggtt cgcaagagtt gacgctcttt
     1561 tgaaccgcgg taactggctt ggaggagcac agtcaccaaa actgtccttt cagtgtagcc
     1621 ttatcgcacc cgaaacttca agactctcct cctctaaacc tgttaccagt ggctgctgcc
     1681 agtggcgctt tgtcgtgttt ttccggattg gactcaagtt gatagttacc ggataaggcg
     1741 cagcggtcgg actgaacggg gggttcgtgc atacagtcca gcttggagcg aactgccttc
     1801 ccggaactga gtgtcaggcg tggaatgaga caaacgcggc cataacagcg gaatgacacc
     1861 ggtaaaccga aaggcaggaa caggagagcg cacgagggag ccaccagggg gaaacgcctg
     1921 gtatctttat agtcctgtcg ggtttcgcca ccactgattt gagcgtcaga tttcgtgatg
     1981 cttgtcaggg gggcggagcc tatggaaaaa cggcttcgcc gcggccttat cgcttccctg
     2041 ttaagcttct ttctggcatc tcccaggaaa tttccgcccc gcctgtaagc cggtaccgct
     2101 cgccgcagcc gaacgaccga gcgcagcgag tcagtgagcg aggaagcgga atatatcctg
     2161 tatcgcatat tctgctgacg ctccgctgct gcatttttct cctgccacat gaagcacttc
     2221 actgatattc gcatccgtgc caacatagta agccagtata cactccgcta gcgctacgtg
     2281 actggttcag ggctgcgccc cgaaacccgc taacagccac tgacgcgcct gcggcttgtc
     2341 caaccccgcg ccgaccggga aaggttttcc cgcccgtccc ggggttatca ggagactgtt
     2401 ttgtcagaga aacggaacaa gatgctcacc atgtgggtga cggaggatga gcacaggcgg
     2461 ctacttgagc gctgcgacgg caggcagctg gcggcgtgga tgcggcagac ctgcctggac
     2521 gaaaagccgg ctcgtaccgc aaaacttcct tcgatctcgc cggcgctgct gcgccagctt
     2581 gccggtatgg gcaacaacct gaaccagata gcccgccgtg ttaacgccgg cgtcggtacc
     2641 ggtcatgacc gggtgcagat tgtggcggcg ctgatggcca tcgatgccgg gcttgagcgg
     2701 ctgcggcacg ccgttcttga gaaaggaacg gacgatgatc gttaaatttc atccacgcgg
     2761 tcgcggcggt ggcgccgggc cggtggacta tctgctgggt aaagaccggc agcgtgaagg
     2821 cgccagcgtc ctgcagggga agccggaaga agtccgggag ctgatcgacg cgtcgcctta
     2881 cgtgaagaaa tacacctccg gcgtcctgtc gtttgcggag gccgatctgc ctcccggcca
     2941 gcgggaaaaa ctgatggcca gcttcgagcg ggttctgatg cccggacttg ataaagatca
     3001 gtacagcatt ctgtgggtgg agcacgagga caaggggcgt ctggagctga actttctgat
     3061 ccccaatacc gagctgctga ccggcaggcg gctccagccg tactacgacc gcgccgaccg
     3121 gccgcgtatc gatgcctggc agaccatcgt gaacggcaga ctggggctgc acgatccgaa
     3181 cgcgccggaa aaccgccggg cgctggtcac gccggccgga ctgccgaaaa cgaagcagga
     3241 agccgcagaa gccatcaccc gtggactgct gagcttagcc tcgtccgggg agctgaaaag
     3301 ccgtcaggac gtcactgagg ctcttgaagg tgcaggtttt gaggtggtgc gtacaacgaa
     3361 aagcagtatc agcattgccg accctgacgg ggggcgaaac atccgactga agggagccat
     3421 ctatgagcag tcttttaacg ctggcgaagg acttagagca gcaatcgaaa gcgcagcaga
     3481 agagtaccgg cgagatgctg aaagccgcat tcagcgagca cgagcagtct gtcagagcgg
     3541 aactgaacgc aagcgcgagg agaatcagcg acgccatcag cgcccacgag cagagtatga
     3601 gcgaggcgat ggagaaaaac cggcggagcg tgttgctgac ggccgggagg acatggctca
     3661 ccatcctgat ggtgtcagcg ctgctgatcg ccacgagcgg gagcattctg tggtggcagg
     3721 gacggcagat aaccgacaat tacacacatc ttcgtcagca ggaagatacc ctggcgaaaa
     3781 tgaccgcccg gacgtgggga gtacgctatc aggagagcaa cgacggccgg aggttcctta
     3841 tcctgccgcc ggggatgcaa gccgaagcca tcccctacga cgggacgacc tggatccgcc
     3901 tgaaacagga gtagcggaaa atgacagagc tggaaaagca gttgctgagc gcattagagc
     3961 agctacagca ggactactcg caaaggctgg acgaatggga gagcgccttc gcggaatggc
     4021 ggagcatgtg tggacttatg caacgggaga acgcggtgct gaacgagcgc gtgtcggact
     4081 tgagcacgca ggtgctgagt ttaagcgagc agctgcgccg cttgtccggg aactgaatgc
     4141 catcgaggag aaggctgcac tggagtatca gcgtcagaac gagctggagc tgacgctccg
     4201 acagaagcag aagagtttcg atggtccgaa gatgaggtga cagcccgcac gaagaagggc
     4261 tcatcgcgtt cctgctaaat aggctgacta ccggaatggt agtgacttat cccggaggaa
     4321 gtgatgaaaa ttctcaacgt tattgaagcc ctgctgaact gtttttacct ggtgatggag
     4381 ctgtgtgagt tgccggagag gcatttgccg gtttttaagg cgttcgcgct gattttagtg
     4441 tgactttacg ctgcatgcat ctggctgcat gactatgcat cagtgtaata tccagcggct
     4501 gcgtttttgg tgttttttcg tcatgtctgt cgccactttc tcgcgtctgg caccggaaac
     4561 gcagccaacc ccgtttctgc ggtgcgggca aggggtgtta tgttaaaagc cgaggtctgg
     4621 cggatacgga aaaaattatg ccggccgggc ttatgcccgc ggcaatccgg ccgatactta
     4681 aattatcctt cacaaaggat gtgctgcgat ccaggcagtt gagtgttttc cggctcccgg
     4741 atgtgagcca tttttttgcc ttctgatgcc tgttaatgca tgcggagctg cgctggttct
     4801 tccaagattg atagacgcca gcttctctgc tggagccggc ggatttgccg taaatatgaa
     4861 cattttctta ttgttcagcc cgctaaagat ggcgggtttt ttacgcgtga aatccggagc
     4921 cggacatcat gccggcat
//
