LOCUS       NZ_CP010353             4724 bp    DNA     circular CON 25-DEC-2023
DEFINITION  Acinetobacter johnsonii XBB1 plasmid pXBB1-2, complete sequence.
ACCESSION   NZ_CP010353
VERSION     NZ_CP010353.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03268929
            Assembly: GCF_001484935.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter johnsonii XBB1
  ORGANISM  Acinetobacter johnsonii XBB1
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 4724)
  AUTHORS   Zong,Z.
  TITLE     The complete genome of Acinetobacter johnsonnii strain XBB1 carrying
            blaNDM-1and blaOXA-58 from hospital sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 4724)
  AUTHORS   Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2014) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Newbler v. 2.6; Sspace v. 2.0
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina; 454
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/25/2023 04:54:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,995
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,684
            CDSs (with protein)               :: 3,684
            Genes (RNA)                       :: 108
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 203
            CDSs (without protein)            :: 203
            Pseudo Genes (ambiguous residues) :: 0 of 203
            Pseudo Genes (frameshifted)       :: 103 of 203
            Pseudo Genes (incomplete)         :: 102 of 203
            Pseudo Genes (internal stop)      :: 46 of 203
            Pseudo Genes (multiple problems)  :: 41 of 203
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP010353.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4724
                     /organism="Acinetobacter johnsonii XBB1"
                     /mol_type="genomic DNA"
                     /strain="XBB1"
                     /db_xref="taxon:1242245"
                     /plasmid="pXBB1-2"
     gene            132..1103
                     /gene="mobQ"
                     /locus_tag="EHS42_RS19330"
                     /old_locus_tag="RZ95_19180"
                     /old_locus_tag="RZ95_RS19130"
     CDS             132..1103
                     /gene="mobQ"
                     /locus_tag="EHS42_RS19330"
                     /old_locus_tag="RZ95_19180"
                     /old_locus_tag="RZ95_RS19130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005265044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_058952629.1"
                     /translation="MAIYHCSTKTVNRSSGRTAVASSAYRAGEKLEDERTGLTHDFTRK
                     DGVAHSEIISNLDIEIDRGELWNLAEKTENRKDARTAREWVIALPDELDADQRKDLAKD
                     FARSLVDRYDVIADLAIHEPSKGGNDKNHHAHIMLTTRKAELDADNKLTLTTKTDIELS
                     NAKRKSLGMGTTQDEIKQIRETWANLANHALERAGYREKIDHRSYADQNNGLQATIHEG
                     TKVTQLRRQGIDTEISRFNDNVKQQNSQQLHQQKQQKESVLQRGLSRVDQGFDQWQKNQ
                     ETKRLELERQAEMKRQQELDKQRAEQALRKASQKLSRGGMSL"
                     /name="mobQ"
     gene            1100..1597
                     /locus_tag="EHS42_RS19335"
                     /old_locus_tag="RZ95_19185"
                     /old_locus_tag="RZ95_RS19135"
     CDS             1100..1597
                     /locus_tag="EHS42_RS19335"
                     /old_locus_tag="RZ95_19185"
                     /old_locus_tag="RZ95_RS19135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004969149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952623.1"
                     /translation="MSNQNDLDDQLYILLASMKEYREAIADDNKRLEQFYNQVASGVLD
                     KAEKSLENANKKHTGVLNNSIQALNEATNRLNLKFIIIFASTFVAVMMVFILAIFLYVP
                     SKDEIDERRADMAVLKKYPLQIRESNGETLVRIMTKKCYSFEPNNVKNKTYDWCRIDPK
                     KY"
                     /name="hypothetical protein"
     gene            1745..2230
                     /locus_tag="EHS42_RS19340"
                     /old_locus_tag="RZ95_19190"
                     /old_locus_tag="RZ95_RS19140"
     CDS             1745..2230
                     /locus_tag="EHS42_RS19340"
                     /old_locus_tag="RZ95_19190"
                     /old_locus_tag="RZ95_RS19140"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952624.1"
                     /translation="MNKVLNLALVSSALFLSGCATQQVAQIAPLDTSRTLPYSKDKVWA
                     STVKIVSQKLPIQVIEKDSGLISTQTAQLPIGYNNSGYQNYFYQPNVFLATWGGANVRL
                     NVIVNPESASSTNIKLDATYQALETNVTKSWMAVRSNGQAENRIIDEIEQDLMKSNK"
                     /name="hypothetical protein"
     gene            2773..3702
                     /gene="repM"
                     /locus_tag="EHS42_RS19345"
                     /old_locus_tag="RZ95_19195"
                     /old_locus_tag="RZ95_RS19145"
     CDS             2773..3702
                     /gene="repM"
                     /locus_tag="EHS42_RS19345"
                     /old_locus_tag="RZ95_19195"
                     /old_locus_tag="RZ95_RS19145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871874.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein RepM"
                     /protein_id="WP_058952625.1"
                     /translation="MKNGLVVKDNALINASYNLELTEQRLVMLAIINARELGQGITADS
                     KLEIHASDYAKLFNVSPDASYKALKDAVNNLFNRQFSYTAEYKKTGKVGIVRSRWVSRI
                     FYVDDLALLEITFAPDVVPLITRLEEHFTKYEAKQVAHLTSKYATRLYELLIAWREVGK
                     TPVFELQQLRKNLGVEDDEYQRMHHFKSRVLETAITQINEHTDIKATYEQHKKGRTITG
                     FSFKFKQKVQPKIETKRDPNTPDFFIKMTDAQRHLFANKMSEMPEMGKYSQGTESYQQF
                     AIRIADMLLEPEKFRELYPVLEKVGFQP"
                     /name="repM"
     gene            3748..4083
                     /locus_tag="EHS42_RS19350"
                     /old_locus_tag="RZ95_19200"
                     /old_locus_tag="RZ95_RS19150"
     CDS             3748..4083
                     /locus_tag="EHS42_RS19350"
                     /old_locus_tag="RZ95_19200"
                     /old_locus_tag="RZ95_RS19150"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952626.1"
                     /translation="MKNLLILGTIFLITACSQSETDKLISDQKKLEKQIIELNKQAEPL
                     GDECNKLVAEYKDALAKNSPDTEAKKEAGKKVCQQAFDLSNKALELQGEIVNMQLAIIA
                     EDTKGKK"
                     /name="hypothetical protein"
     gene            4083..4364
                     /locus_tag="EHS42_RS19355"
                     /old_locus_tag="RZ95_19205"
                     /old_locus_tag="RZ95_RS19155"
     CDS             4083..4364
                     /locus_tag="EHS42_RS19355"
                     /old_locus_tag="RZ95_19205"
                     /old_locus_tag="RZ95_RS19155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001275793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952627.1"
                     /translation="MSAATILKESEACNLVGWAIIVIGIISGGIFIATFGRIEIPSSYY
                     GTRTVWSGVMIATGIGIAINGFLAGYLFQKIASILRYHEANQPKIEKN"
                     /name="hypothetical protein"
     gene            complement(4361..4645)
                     /locus_tag="EHS42_RS19360"
                     /old_locus_tag="RZ95_19210"
                     /old_locus_tag="RZ95_RS19160"
     CDS             complement(4361..4645)
                     /locus_tag="EHS42_RS19360"
                     /old_locus_tag="RZ95_19210"
                     /old_locus_tag="RZ95_RS19160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004896757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952628.1"
                     /translation="MTKSAENIEKKIEAQLEKLKQLKAQKQAIEAREKNKKKEQERKDD
                     TRRKILLGSYLIKKMNANEASKEKILAELNEYLTEDRDRQLFDLPIMNH"
                     /name="hypothetical protein"
     Typing          2774..3702
                     /name="rep_cluster_1265"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          133..1100
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.975"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtgtttttca tgaaatgcgc acttacgact tggatttcat ccaagtcaaa gtttgcgtaa
       61 ggggaatccc cttaacccca aaaaactgct acgcaatttt tttaaaagca aaagcatctc
      121 aaggcgactg catggcaatc tatcattgtt ccactaaaac agtgaaccga agttcaggac
      181 gaactgcggt tgcatcgagt gcctatcgtg caggtgaaaa actagaagat gaacgcacag
      241 ggctgaccca tgactttacg agaaaagacg gtgtcgccca ttctgaaatt atctctaatc
      301 tagatattga aattgaccgt ggcgaacttt ggaacttggc agaaaaaacc gagaaccgca
      361 aagatgcccg aaccgctaga gaatgggtaa tcgccctacc cgatgaatta gacgctgatc
      421 aacgtaagga cttggcaaaa gactttgcca ggtccttagt tgatcgctat gacgtaatcg
      481 cagatttagc catccatgaa ccgagtaaag gcggtaatga taaaaaccat cacgcccata
      541 tcatgctcac aacccgaaaa gccgaattgg atgcagacaa taaactcact ctgaccacca
      601 aaaccgatat tgaactcagc aacgccaaac gaaaaagcct tggtatgggg acaacccaag
      661 acgaaattaa acagattcgg gaaacgtggg caaatttagc caatcacgca ttagaacgag
      721 caggctaccg agaaaaaata gaccatcgta gctatgccga tcagaacaac ggactacaag
      781 ccaccatcca tgaaggcacc aaagtcactc aattacgcag acaaggcata gacactgaaa
      841 tcagccgttt caatgacaac gtcaaacagc aaaatagcca acagcttcac caacagaaac
      901 agcaaaaaga gagcgtttta cagcgtggtt taagccgtgt cgatcaaggt tttgatcaat
      961 ggcagaagaa ccaagaaacc aaacgtctag aactggaacg ccaagcggaa atgaagcgac
     1021 agcaagaatt agataaacaa cgagccgagc aagcactccg caaggcatct caaaaactaa
     1081 gtagaggcgg aatgtcgtta tgagcaacca aaatgattta gatgaccaat tatatatttt
     1141 actggcatcc atgaaggaat atcgagaagc catagcagac gataacaagc gattagagca
     1201 gttttacaac caagtcgcta gcggagtact agataaggct gaaaaatcgc tagaaaatgc
     1261 aaataagaag catacaggcg tattaaacaa cagtattcag gcattaaacg aagcaaccaa
     1321 tagactgaac ttaaaattta tcattatttt tgccagtacg tttgtcgctg tgatgatggt
     1381 gttcattttg gcaatattct tatacgtgcc aagcaaagat gaaattgatg aacgtagagc
     1441 tgatatggct gtacttaaaa aatatccgct acaaattaga gaaagcaatg gtgaaacgct
     1501 tgtcagaatt atgactaaga aatgctattc atttgagcca aataacgtca aaaataaaac
     1561 ttatgactgg tgtcgcatcg accctaaaaa atactagatg atcggtactt tgcttggttt
     1621 ttatcattac aaatcaaatt acagcagtcg caaagtatcg agtattaaca ataatcatag
     1681 ctaaattata tttttttcct taaattatcg tgatttataa tttattttta gagtagtcat
     1741 caaaatgaat aaggttttaa atttagcttt agtatcaagt gcattatttt tatctggctg
     1801 tgctactcaa caagtagcac aaatagctcc attagataca tcaagaacat tgccttactc
     1861 taaagataaa gtatgggcat caactgtaaa aatagtaagt cagaaattac caattcaagt
     1921 tattgaaaaa gatagtggct taattagcac tcaaactgcc caactaccta taggctataa
     1981 caattcaggt tatcaaaatt atttttacca accgaatgta tttttagcaa catggggggg
     2041 tgcaaatgta cgccttaatg taattgttaa tcctgaaagt gcttcatcta ctaacatcaa
     2101 gttagatgca acgtatcaag ctcttgaaac taatgttact aagtcttgga tggctgttcg
     2161 atcaaatgga caagcagaaa atagaatcat agatgaaatt gaacaagatt taatgaaatc
     2221 taataaataa gatttgtgat ttctcttaag gaaccgagcg agtgtctacg agcgattgag
     2281 catcatcaaa atttcacctt cgccttttct ctgattacag gctccctttc gattttaaac
     2341 ggtaggtaca gagcatcccg aatgggtgcg aacttttgag cttttgcttt tcaaaaagta
     2401 tgagcgaagc gaatacatta ccaatgcttt tgcttttaaa tttcacaaat tgaattaacc
     2461 aaaaactgcc cctacgaagc gaggaacgag cttcaataga gtacgagctt tagcgagtac
     2521 ctagggcagt ttgcactccc ctcttgaaag gcttttaatt atttttaaag cttttaaatg
     2581 cttttagatg agctgaaagc attgatataa gagggtttta gcgtatataa gcacacaaat
     2641 tctcttgtat aagcacacaa attctcttgt ataagcacac aaattctctt gtataagcac
     2701 acaaattctc ttgatttaaa cacataaaat atatagtgtg taaatacaca ttaataataa
     2761 cgtgtattta atatgaagaa tggtttagtt gtgaaagata atgcattaat aaacgccagt
     2821 tataatttag aactaacaga acagcgttta gtcatgcttg caatcattaa tgcaagagaa
     2881 ttagggcagg gtattacggc agatagcaaa ctagaaatac atgctagtga ctatgcaaag
     2941 ctatttaatg tatcacctga tgcatcctac aaagccctga aagatgctgt aaataatcta
     3001 tttaacaggc agtttagcta tacagccgaa tataaaaaaa cagggaaggt aggtatcgtt
     3061 cgctctcgct gggtgagtcg tattttttat gtagatgatt tggcattact agaaattact
     3121 ttcgcacctg atgtagtgcc tttaatcact agattagaag aacactttac aaaatatgaa
     3181 gccaaacaag ttgcacacct caccagtaag tatgccacta gactttatga gttattaatc
     3241 gcttggcgtg aagttggtaa aacacctgtt tttgaactac aacaattacg taaaaattta
     3301 ggtgttgaag atgatgaata tcaacgtatg caccatttta aaagccgtgt attagaaact
     3361 gccattactc aaatcaatga acatacagac ataaaagcca cttatgagca acacaagaaa
     3421 gggcgtacaa ttactgggtt ttcattcaag tttaagcaaa aagtacaacc taaaattgaa
     3481 actaaacgag atccaaacac ccctgacttt tttataaaaa tgaccgatgc gcaacgccat
     3541 ttatttgcaa ataaaatgtc tgaaatgccc gaaatgggca agtattcgca gggtactgaa
     3601 agctatcaac aatttgctat acgcatcgca gatatgttgt tagagcctga aaagttccga
     3661 gaattgtatc ctgttttaga aaaagttggt tttcagccat aaattaaaat attcagttaa
     3721 aatgaccttt tctttagaac taacacaatg aaaaatttat taattttggg aacaatattc
     3781 ttgataactg catgtagcca atctgaaaca gataaactta taagtgatca gaaaaagtta
     3841 gaaaaacaaa tcattgagtt aaataaacaa gcagaaccat tgggcgatga atgcaataaa
     3901 ttagtcgctg aatacaaaga tgctttagca aaaaatagcc ctgatacaga agcaaaaaaa
     3961 gaagcaggta aaaaagtttg ccagcaagca tttgacctgt caaacaaagc cttagaattg
     4021 caaggtgaga ttgttaatat gcagttagct atcattgcag aagatactaa aggaaagaaa
     4081 taatgagcgc agctacgata ctgaaagaaa gtgaagcctg caatttagtt ggttgggcaa
     4141 ttatagttat tggaataatt tcagggggta tttttatagc tacttttggc agaatcgaaa
     4201 ttccaagttc ctattatgga acaagaacag tttggtctgg agtaatgata gcaactggaa
     4261 tcggtattgc tataaatgga ttcttagctg gatatttatt ccaaaaaata gccagcattc
     4321 tccgatacca tgaagccaat caacctaaaa tagaaaaaaa ctaatgattc attataggca
     4381 aatcaaaaag ctgtctatct cgatcttcag ttaaatactc gttgagttca gcgagtattt
     4441 tttctttgct tgcttcattg gcattcatct ttttaatcaa ataagaaccg agcaaaattt
     4501 tgcgtctagt atcgtccttt ctttcctgtt cctttttctt gtttttttct cttgcttcga
     4561 tagcctgttt ttgggctttt aactgtttca gcttttctaa ctgtgcttca attttctttt
     4621 caatattttc agcagatttt gtcataacgt ccaatttcgg gatgtagaaa accactcaag
     4681 cataaggctc tatgaattgc aattcaagcg agctatatgc tatc
//
