LOCUS       NZ_CP010352             3978 bp    DNA     circular CON 25-DEC-2023
DEFINITION  Acinetobacter johnsonii XBB1 plasmid pXBB1-1, complete sequence.
ACCESSION   NZ_CP010352
VERSION     NZ_CP010352.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN03268929
            Assembly: GCF_001484935.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter johnsonii XBB1
  ORGANISM  Acinetobacter johnsonii XBB1
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter.
REFERENCE   1  (bases 1 to 3978)
  AUTHORS   Zong,Z.
  TITLE     The complete genome of Acinetobacter johnsonnii strain XBB1 carrying
            blaNDM-1 and blaOXA-58 from hospital sewage
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3978)
  AUTHORS   Zong,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-DEC-2014) Center of Infectious Diseases, West China
            Hospital, Sichuan University, Guoxuexiang 37, Chengdu, Sichuan
            610041, China
COMMENT     ##Assembly-Data-START##
            Assembly Method                   :: Newbler v. 2.6; Sspace v. 2.0
            Sequencing Technology :: Sanger dideoxy sequencing; 454; Illumina
            ##Assembly-Data-END##
            ##Genome-Assembly-Data-START##
            Assembly Method                   :: Newbler v. 2.6; Sspace v. 2.0
            Genome Coverage                   :: 100x
            Sequencing Technology             :: Illumina; 454
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/25/2023 04:54:53
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,995
            CDSs (total)                      :: 3,887
            Genes (coding)                    :: 3,684
            CDSs (with protein)               :: 3,684
            Genes (RNA)                       :: 108
            rRNAs                             :: 7, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 7, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 203
            CDSs (without protein)            :: 203
            Pseudo Genes (ambiguous residues) :: 0 of 203
            Pseudo Genes (frameshifted)       :: 103 of 203
            Pseudo Genes (incomplete)         :: 102 of 203
            Pseudo Genes (internal stop)      :: 46 of 203
            Pseudo Genes (multiple problems)  :: 41 of 203
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP010352.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3978
                     /organism="Acinetobacter johnsonii XBB1"
                     /mol_type="genomic DNA"
                     /strain="XBB1"
                     /db_xref="taxon:1242245"
                     /plasmid="pXBB1-1"
     gene            complement(join(3436..3978,1..147))
                     /locus_tag="EHS42_RS19310"
                     /old_locus_tag="RZ95_19160"
                     /old_locus_tag="RZ95_RS19110"
     CDS             complement(join(3436..3978,1..147))
                     /locus_tag="EHS42_RS19310"
                     /old_locus_tag="RZ95_19160"
                     /old_locus_tag="RZ95_RS19110"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952622.1"
                     /translation="MSQKAQSRLAQLIKTGEDLLTTVILKPSQILGTIEVFSGNGSDIF
                     TQWKHSSKKILKGLSEDDYNSFVEAEKYKTLESQPEVLRRLVSILRASLDDLNYEVLDT
                     NLIASKDEIKAGNTIHYHNFNNYGNMASHNTESTINQNSNLTIHKGNFDFLASQLKGYG
                     VQDEHIKDLRNIIDVEPSPESPTEYSEQVNSWIGKISVKALTESWDVVKGVGIGIFPDL
                     IKMYYGI"
                     /name="hypothetical protein"
     gene            446..1690
                     /gene="mobV"
                     /locus_tag="EHS42_RS19315"
                     /old_locus_tag="RZ95_19165"
                     /old_locus_tag="RZ95_RS19115"
     CDS             446..1690
                     /gene="mobV"
                     /locus_tag="EHS42_RS19315"
                     /old_locus_tag="RZ95_19165"
                     /old_locus_tag="RZ95_RS19115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005080191.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobV family relaxase"
                     /protein_id="WP_058952619.1"
                     /translation="MSFAILRLQKLKTFADIGGSLSHNYRNRETLNADSDRTHLNEHDL
                     DTNEKCMSAIRDRIPEKRRKDAVLCIEHLVTASPEWDGWGTEKETEFFEKSKKWLEEKY
                     GKNNVVSTTIHRDETTPHLVAYVVPLDEESGRLNAKKYIGGSRLTLSKMQTDFAVQVKD
                     LGLKRGIEGSKAKHTSISEYYNDVNNYEPEPNIVLQTPEPNGMFESKTQYAERIIESVI
                     EQIEPKLKELNLLANQTRSAKKEAQNALKTASEARKALSDLQEHVKPYLDALDGLNQTW
                     KEYFDKTLRVAKEQVLEKRKQLQVEKENEELSLKLKKEERVFQMEWNNTFASFNKEQIK
                     NYEYQLECLEQDYPVEFYRQIQIKSLQKNLILNPNYKRYSKNEFHQEPEKKVQQAQKND
                     QEKRSSNDYDSPPPF"
                     /name="mobV"
     gene            2279..3217
                     /locus_tag="EHS42_RS19320"
                     /old_locus_tag="RZ95_19170"
                     /old_locus_tag="RZ95_RS19120"
     CDS             2279..3217
                     /locus_tag="EHS42_RS19320"
                     /old_locus_tag="RZ95_19170"
                     /old_locus_tag="RZ95_RS19120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005080187.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_058952620.1"
                     /translation="MNLDIKKHYPKDWIVLQNRVVECYRSMSLDEKRLFLMATPLARTT
                     KVSSNDPIFISSSEFSTECGINLSTAYTALESATDRLFTRFFGYTNAEGNRVRIRWLNK
                     VIYLKNQGGTELYFTDEVLLLLREFDALNPYTKYKKEIVLRLKKDYSLDFYHLAKKHQT
                     MGGFQITLNELFEQLGLPESYQDLSNLKKRVIKPSLDEITANTDIDLSYENVKRGRSVV
                     GFKFTVKEKPKPKVIETGRDPNTPDLFHKMTESQLDTFSSKLSELPEVQTMAHAGEDMK
                     PFIARIRSMLKDPEKQKNLLPHLAKLGFKSK"
                     /name="replication initiation protein"
     gene            3214..3405
                     /locus_tag="EHS42_RS19325"
                     /old_locus_tag="RZ95_19175"
                     /old_locus_tag="RZ95_RS19125"
     CDS             3214..3405
                     /locus_tag="EHS42_RS19325"
                     /old_locus_tag="RZ95_19175"
                     /old_locus_tag="RZ95_RS19125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005080189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_058952621.1"
                     /translation="MMFEKKITQFEKEVLLQEKIEQLESELKEFSDLQKKVYSDRLQKS
                     IVGLENRIRRIKKRLYIT"
                     /name="hypothetical protein"
     Typing          2280..3217
                     /name="rep_cluster_1223"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
     Typing          447..1687
                     /name="MOBV"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttccattga gtaaatatat ctgagccatt acctgaaaaa acttcaatgg ttcccaatat
       61 ctgtgatggt tttaatataa ccgtagttaa aagatcttct cctgttttaa ttaattgcgc
      121 taatctactt tgtgcctttt gactcatttt tatcctctga aattaggtgt tttttaataa
      181 tagctcaaag actctcactg cttatggtct gggctaatac aatcatatac ttaaaattat
      241 attcaatgag tgtcatatca aaaggaatat ataagtggct tcttagacaa cctttcaggt
      301 tgttaggggt caaggggagg attccccttg ctcatgaact ttcaacgtac ctttaggtac
      361 tttgaaagtg gagtgagtcc acttcgctat cgcaaagctc aaaaagctct gctatcgtgt
      421 atgtttttcg gtattggatc tctcaatgtc ttttgctatt ttgcgccttc agaaattgaa
      481 gacttttgcc gacatcggcg gaagtctttc gcacaactat cgcaatcgtg aaacgctcaa
      541 tgctgattct gatcgtaccc atttgaatga gcatgactta gatacgaacg aaaaatgcat
      601 gtcagcgatc cgggaccgaa tccccgaaaa aagacgtaaa gatgctgttt tgtgtattga
      661 gcacctggta acagcatcac cagaatggga tggctggggc acagaaaaag aaactgaatt
      721 ttttgaaaaa tcgaaaaaat ggttagaaga gaaatacggt aaaaataatg tcgtcagcac
      781 tacgattcat agagatgaaa cgactccgca tttagttgcg tatgtcgtac ctcttgatga
      841 agaaagcggt agattaaatg cgaaaaaata tatcggtgga tctcgtctga cactctcaaa
      901 aatgcagact gattttgcag ttcaggtaaa ggatttaggg cttaaacgag gaattgaggg
      961 aagtaaggca aaacatacgt ctattagtga gtactacaac gatgtaaaca actatgaacc
     1021 tgaacccaat attgtacttc aaacacctga acccaatgga atgtttgaaa gtaaaacgca
     1081 atatgctgaa agaattattg aatctgtgat tgagcaaatc gaaccaaaat taaaagaact
     1141 aaatttatta gcaaatcaaa ctagatcagc aaaaaaagag gcacaaaatg cacttaaaac
     1201 agcttcagag gctcgtaaag cactttcaga tttacaagaa catgtaaaac cgtatctaga
     1261 cgcactggac ggtctaaatc aaacctggaa agaatatttt gataaaactt tgcgagtagc
     1321 taaagaacaa gtgctagaga aaaggaagca attgcaagtt gaaaaagaaa atgaagaact
     1381 atcactaaaa ctaaaaaaag aagaaagagt atttcaaatg gaatggaaca atacatttgc
     1441 tagtttcaat aaagaacaaa tcaagaatta tgaatatcaa cttgagtgtc ttgaacaaga
     1501 ttatcctgtt gaattttata gacaaattca aatcaaatca ttgcaaaaaa atcttatttt
     1561 gaatccaaat tacaagagat acagtaaaaa tgagttccat caagaaccag aaaaaaaagt
     1621 acaacaggca caaaaaaatg atcaagaaaa acgatctagc aatgattacg attcaccacc
     1681 accattttaa aatgctctag aacaaaaaaa aacggggttt ttagccctat ttggtctttt
     1741 ctgcataaaa gtataattga aataaaaaat gctcttagaa cgcaaatgag agcatttagc
     1801 gagtgtctac gagcgtcata atgaaagttt gcttattccc ccctctgatt actgcttttg
     1861 ctcttatgtc tcaaggaaag agtgattagc gagtgtctac gagcgaagta ttgatgtttt
     1921 tgctcttaaa aaaagcatga gcatagcgaa tgcattattt atgcttttga ctttgctttt
     1981 gctcttgaaa cgacacgagc aaagcgagtg ccatagcctt tgattttctt ttttagcttt
     2041 taaaaagctt ttaaaagctt ttcgctcctc taaaagcacc gccaaatata gctcttagac
     2101 tttaaaaaag tacaaacgcc aagtattaaa gtacaaacgc caagttaaat gcacttaaaa
     2161 aagtacaaac gccaagttaa aaaagtacaa acgccaagta ttaaagtaca aagttaaaca
     2221 ttgaactttt aatattaaaa ggtattatgt taaacaaagt actttatttg ggataaatat
     2281 gaatttagac ataaaaaaac actacccgaa agactggata gttttacaga atagagtcgt
     2341 ggagtgttat cggagtatgt cacttgatga aaagcgttta tttctgatgg ctacaccttt
     2401 ggcaagaaca acaaaagtat caagtaacga tcctattttc atatcgtcta gtgagttttc
     2461 aactgagtgc ggtatcaact tatcaacggc ttatacggct ttagaatcag ccacggatag
     2521 actttttact cgtttttttg gctataccaa tgctgagggt aatcgagtaa gaattagatg
     2581 gctaaataaa gtaatctact taaaaaatca gggtgggaca gagctatatt ttacagatga
     2641 agtactactt ttacttagag aatttgatgc cctaaaccct tataccaagt ataaaaaaga
     2701 gatcgtttta cggctaaaaa aagactactc actagacttc taccacttgg ctaagaaaca
     2761 ccagacaatg ggcggatttc aaataacgct caatgagtta tttgaacagc tcggactacc
     2821 tgagtcatac caagacttaa gcaaccttaa aaaacgtgtt attaagccat cactggacga
     2881 gatcacagcc aacaccgaca tagacctaag ttatgagaat gtaaagcgtg ggcgatctgt
     2941 ggttggcttt aaattcactg tcaaagaaaa accaaagcca aaagtcatcg aaacaggacg
     3001 agatccaaat acacctgacc tattccacaa aatgacagaa tctcaacttg atacgtttag
     3061 cagtaaactt tcggaactgc ccgaagtgca aacaatggca catgcaggcg aagatatgaa
     3121 accatttatt gctcgtattc gttcgatgct caaagaccct gaaaaacaaa aaaatttgct
     3181 tcctcattta gcaaaattag gatttaaatc gaaatgatgt ttgagaaaaa aattactcag
     3241 tttgaaaagg aagttttact acaagaaaaa attgagcagc tagaaagtga gcttaaagaa
     3301 ttttctgatc ttcaaaaaaa agtgtatagc gatcgacttc aaaaaagcat tgttggcttg
     3361 gaaaatagaa tacgacgaat aaaaaaaagg ctctatataa cctgaaaaat atagggggct
     3421 aatcccccct atattttaaa ttccgtaata catttttata agatctggga aaatacctat
     3481 tcctacgcct ttgacaacat cccaagattc tgtcaatgct ttaacgctaa ttttaccaat
     3541 ccaagaattt acttgttcac tatattctgt aggtgattca ggagaaggtt caacatcaat
     3601 gatatttctt aaatccttga tatgctcatc ttgcacacca taccccttca actgtgaagc
     3661 taaaaagtcg aaattaccct tatgaattgt tagattagaa ttctgattaa tagttgactc
     3721 agtgttgtga ctagccatat ttccataatt attgaagtta tggtaatgaa ttgtatttcc
     3781 tgctttaatt tcatctttag atgcaattaa attagtgtcc aatacctcat aattcaagtc
     3841 atccaaactt gctcttaaga tagaaactaa tctccgtaat acttcaggtt gtgattcaag
     3901 agttttatat ttttcggctt ctacaaaact attgtaatca tcttcactta aaccttttaa
     3961 tatcttctta gagctatg
//
