LOCUS       NZ_CP008709             1967 bp    DNA     circular CON 24-NOV-2023
DEFINITION  Acinetobacter baumannii strain AB5075-UW plasmid p3AB5075, complete
            sequence.
ACCESSION   NZ_CP008709
VERSION     NZ_CP008709.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02894434
            Assembly: GCF_000963815.1
KEYWORDS    RefSeq.
SOURCE      Acinetobacter baumannii
  ORGANISM  Acinetobacter baumannii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales;
            Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii
            complex.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Gallagher,L.A., Ramage,E., Weiss,E.J., Radey,M., Hayden,H.S.,
            Held,K.G., Huse,H.K., Zurawski,D.V., Brittnacher,M.J. and Manoil,C.
  TITLE     Resources for Genetic and Genomic Analysis of Emerging Pathogen
            Acinetobacter baumannii
  JOURNAL   J Bacteriol 197 (12), 2027-2035 (2015)
   PUBMED   25845845
REFERENCE   2  (bases 1 to 1967)
  AUTHORS   Gallagher,L.A., Hayden,H.S., Weiss,E.J., Hager,K.R., Ramage,E.,
            Radey,M.R., Bydalek,R., Manoil,C., Miller,S.I. and Brittnacher,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-MAR-2015) Microbiology, University of Washington, 1959
            Pacific Street NE, Seattle, WA 98195, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Direct Sequencing
            Genome Coverage                   :: 15x
            Sequencing Technology             :: Sanger
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/24/2023 02:46:25
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,969
            CDSs (total)                      :: 3,873
            Genes (coding)                    :: 3,812
            CDSs (with protein)               :: 3,812
            Genes (RNA)                       :: 96
            rRNAs                             :: 6, 6, 6 (5S, 16S, 23S)
            complete rRNAs                    :: 6, 6, 6 (5S, 16S, 23S)
            tRNAs                             :: 74
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 28 of 61
            Pseudo Genes (incomplete)         :: 32 of 61
            Pseudo Genes (internal stop)      :: 17 of 61
            Pseudo Genes (multiple problems)  :: 14 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP008709.1.
            Bacteria is available from Colin Manoil, University of Washington.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Acinetobacter baumannii"
                     /mol_type="genomic DNA"
                     /strain="AB5075-UW"
                     /isolation_source="tibia/osteomyelitis of diabetes patient"
                     /host="Homo sapiens"
                     /db_xref="taxon:470"
                     /plasmid="p3AB5075"
                     /geo_loc_name="USA: Walter Reed Army Medical Center"
                     /lat_lon="38.976556 N 77.02875 W"
                     /collection_date="2008"
                     /collected_by="Dan Zurawski, WRAIR"
     gene            1..1182
                     /locus_tag="ABUW_RS19635"
                     /old_locus_tag="ABUW_6001"
     CDS             1..1182
                     /locus_tag="ABUW_RS19635"
                     /old_locus_tag="ABUW_6001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000271233.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_000271233.1"
                     /translation="MYANTQNTQATAERGVPRTHIAPSVDGGSLGIYTDNSANRTTQGF
                     QPIREKFKLLHFARKLLPKERTAHCFYNRITKEEGVSVFLNKLRNKANYGNVMRCANPW
                     ACPVCSAIISEGRKDEVKTAMDWWKAQGGDVLLLTLTAPHYSTTDIKSLKPAMLKARKY
                     MLKGVRATKDLFKHYAIEHYISVFEVTHGKNGFHPHFHILLFTKYHVHNPRGSVMRMQF
                     FEQWKKACEKAGLDQPSYEHGLDLRNGQKAASYVSKWGLEHEMTKGHIKKGKTDSKTPF
                     DLLRDYAEGDENAGKLFRIYFDAFKGTRQLNWSKGLKKLSSKGQEEKTDQELVDETDNV
                     AELMFKLSIELWNPIRKHGRQGELLIKVQEDHTLKKAMEYVKECLGYDGQLRE"
                     /name="protein rep"
     gene            1642..1893
                     /locus_tag="ABUW_RS19645"
                     /old_locus_tag="ABUW_6003"
     CDS             1642..1893
                     /locus_tag="ABUW_RS19645"
                     /old_locus_tag="ABUW_6003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000290587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000290587.1"
                     /translation="MAVQKRLALTIQPDYLDLLKKVADYQNIPVSTMVMGLLDAQRPVV
                     EAMLKAFQDIEAGKDKQKILSELLASGLEAAAQEIRKD"
                     /name="hypothetical protein"
ORIGIN
        1 ttgtacgcta atactcaaaa tacgcaagca actgcggagc gtggcgttcc gcgaacgcac
       61 atcgctccgt cagttgatgg cggctccctt ggtatatata cggataactc cgccaaccgc
      121 actacacaag gctttcagcc catacgagaa aagtttaaat tactgcattt tgctcgaaaa
      181 ttactcccta aagaacgtac tgctcactgt ttctataatc ggattacaaa agaagagggt
      241 gtatctgttt ttttgaataa attacggaat aaagccaatt atgggaatgt gatgcgctgt
      301 gctaatccct gggcttgtcc tgtttgttct gcaattattt cagaaggtcg aaaagatgaa
      361 gtaaaaacgg ctatggactg gtggaaagct caaggcggtg atgtattact tcttactcta
      421 acagctcccc actattcgac tactgatatt aaatctttaa agcctgcaat gcttaaagct
      481 cgaaaatata tgctcaaggg tgttcgggcg actaaagacc ttttcaaaca ctatgccatt
      541 gaacattaca tttctgtatt tgaagtgaca cacggaaaaa atggattcca tccacacttc
      601 catattctgt tattcactaa gtatcacgta cacaatccac gtggttctgt gatgcgtatg
      661 caattctttg aacaatggaa aaaggcatgt gaaaaagcag gattagacca accaagctat
      721 gaacacggtt tggatctccg caatggtcaa aaggcagcaa gctatgtttc aaaatggggt
      781 ttggaacatg aaatgacaaa aggacatatt aaaaaaggta aaacagattc taaaacgcct
      841 ttcgatttac tccgtgatta tgcagagggt gacgaaaatg caggaaaatt atttaggatt
      901 tactttgatg ctttcaaagg tacacgccaa ttaaattggt caaaaggttt gaaaaaactc
      961 tccagcaaag ggcaagaaga aaaaacagat caagaattag ttgatgaaac ggacaatgtt
     1021 gcggagctga tgttcaaatt atctatagaa ctatggaatc caatacggaa acacggcaga
     1081 caaggcgaat tgctgattaa ggtgcaagaa gatcacacac ttaaaaaggc aatggaatat
     1141 gtcaaagagt gcttaggcta tgatggacaa ctgagggaat aattatgtat tggggttttt
     1201 ttctatgtac cgactgtgat cgggtgatgt ctacaaaaaa cactgaaatg gttcatatca
     1261 agaatagaga taatcttgtt cgtggtgttt gtggtgactg tcttaaaaat aaggtcgagt
     1321 acttaaaaca tagagaaaca gcaaaaaaat atttagaaag tttgagagcg aaattaaagg
     1381 ggtcttaggg tgtccctaac aaggtcacag ggtactatgt gtatccttgc ttacatgttg
     1441 tcatgttgtc atgtttacaa gtaccgaacg agtgtctacg agtgacgact ccgcaataaa
     1501 aactaaaaac cttctctccc tgattacaac gctcccatct aaaccaagat cgggagtttt
     1561 tcggctatgc cgactgcaaa acatttgctt attttttgaa tagatgtatt atgtgactat
     1621 tagtaacata aggtttttag aatggcagtt caaaaacgat tagccctcac aattcagccc
     1681 gactatttgg atttattgaa gaaagtagcg gattatcaaa atatccctgt atcaacaatg
     1741 gttatgggct tattagacgc tcaacgccct gtagttgagg caatgcttaa agcatttcag
     1801 gatattgagg caggaaaaga taaacaaaaa atcttatctg aacttttagc atcgggtctt
     1861 gaagcagcag ctcaagaaat tagaaaggat taaatagtaa agccccaaga atggcagttc
     1921 ttagggcttc gaatcctgtt gtacgctaat actacgaggt aactaaa
//
