LOCUS       NZ_CP006660             2014 bp    DNA     circular CON 08-MAY-2024
DEFINITION  Klebsiella pneumoniae strain ATCC BAA-2146 plasmid pMYS, complete
            sequence.
ACCESSION   NZ_CP006660
VERSION     NZ_CP006660.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMN02152539
            Assembly: GCF_000364385.3
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Hudson,C.M., Bent,Z.W., Meagher,R.J. and Williams,K.P.
  TITLE     Resistance determinants and mobile genetic elements of an
            NDM-1-encoding Klebsiella pneumoniae strain
  JOURNAL   PLoS One 9 (6), e99209 (2014)
   PUBMED   24905728
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Hudson,C.M., Bent,Z.W., Meagher,R.J. and Williams,K.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (29-DEC-2015) Systems Biology, Sandia National
            Laboratories, 7011 East Avenue, Livermore, CA 94551, USA
REFERENCE   3  (bases 1 to 2014)
  AUTHORS   Hudson,C.M., Bent,Z.W., Meagher,R.J. and Williams,K.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-JUL-2013) Systems Biology, Sandia National
            Laboratories, 7011 East Avenue, Livermore, CA 94551, USA
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method :: readStepper-assisted revision of previous Newbler
            assembly v. MAY-2015
            Assembly Name                     :: Kpn2145_2
            Long Assembly Name :: Klebsiella pneumoniae ATCC BAA-2146, version 2
            Genome Coverage                   :: 85x
            Sequencing Technology             :: PacBio; Illumina
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_000364385.3-RS_2024_05_07
            Annotation Date                   :: 05/07/2024 02:32:52
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,784
            CDSs (total)                      :: 5,661
            Genes (coding)                    :: 5,530
            CDSs (with protein)               :: 5,530
            Genes (RNA)                       :: 123
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 85
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 131
            CDSs (without protein)            :: 131
            Pseudo Genes (ambiguous residues) :: 0 of 131
            Pseudo Genes (frameshifted)       :: 49 of 131
            Pseudo Genes (incomplete)         :: 77 of 131
            Pseudo Genes (internal stop)      :: 17 of 131
            Pseudo Genes (multiple problems)  :: 12 of 131
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            CP006660.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="ATCC BAA-2146"
                     /db_xref="taxon:573"
                     /plasmid="pMYS"
     gene            complement(1431..1910)
                     /locus_tag="kpn2146_RS27465"
                     /old_locus_tag="Kpn2146_5843"
     CDS             complement(1431..1910)
                     /locus_tag="kpn2146_RS27465"
                     /old_locus_tag="Kpn2146_5843"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_017896843.1"
                     /translation="MRKTLLLCIPFFLLAGCAQTKPQMPDANYEKFAKVEVASDACLNS
                     NFITAQEAGQAHSNISLFLSSWTYDYVRYSNLLAQGHQDVKKIKITQEGCNLLRAKIYQ
                     DTIEAQRYEKQMEIAVQQKAIADQQALQSIQNMQSTSPKTTYCNQIGTQTICNSY"
                     /name="hypothetical protein"
     Typing          complement(2..507)
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="88.826"
                     /coverage="99.0"
                     /evalue="7.69e-176"
ORIGIN
        1 tcttcttgag atcatttatg gcagagcgta atctcttgct ctgtaaacga aaaaaccacc
       61 ctggcaggtg gtttttcgaa ggttagttaa tcctggcaga ttctctaacc gtggtaacag
      121 tcttgtgcga gacatgtcac caaatctgtc cttctagtgt agcctcagtc aggccgccac
      181 ttcaagaact ctgaacacat ctctcgcaca aacctgttac cagtggctgc tgccagtggc
      241 gttttgtcgt gtctttccgg gttggactca agacgatagt taccggataa ggcgcagcag
      301 tcggactgaa cggggggttc gtgcatacag tccagcttgg agcgaactgc ctacccggaa
      361 ctgagtgtca ggcgtggaat gagataaacg cggccataac agcggaatga caccggtaaa
      421 ccgaaaggca ggaacaggag agcgcacgag ggagccacca gggggaaacg cctggtatct
      481 ttaagtcctg tcgggtttcg ccaccactga tttgagcgtc agatttcgtg atgcttgtca
      541 ggggggcgga gcctatggaa aaccggcagc ccttaagtct cttctcacac ttcatacctc
      601 cacgcccttt gattgatccc gtaacgctcg ccgcagagtc atgaccgaac gcagtgagcg
      661 aatgaccgag gaagcgtaat ttctccggtg gctgcttagg ctcctgtcgc tccgtactat
      721 catctttcac cacttacgtt ttctgcacgt attgatgcgg acaggaaatg tcttgtcatt
      781 accgccgctt tgcgccagtg acaaaatcag cgggacaaga tgtgtttttg gagtaccgcc
      841 gacactccag aatgtttcat caggcgccgc ccgatacgct gagtttcgtg cgtacgaaat
      901 ttctctgctg ttgagatcta gggcaggatt cgcaaagtgc tggcgtttgt acccaccgga
      961 agctgccgca cctggcggct tggccaacgc ctcacggccg cacagtcaac tgtgcacccg
     1021 ttcaccgtta ccagatcccc tgattccggc cgggcctgcc tgcactggcc aaagccctaa
     1081 aactgcgcaa tcagcagcgc gggggcagtt gataaccact ttttactgtc atacttattt
     1141 gccggctctc tgatcggtac cggctgactg tttgtgcaaa ttttgtcgga catcctgacc
     1201 ctcgatgtcc gttttttttg ttcaaaattc gcctttagtg ccagcattcg tccgaaaccg
     1261 gccgccattc acttctgtgc atagccatgc aggcgcgcag aaatcatcag gcgcgttttt
     1321 tcacgatatg gacagggaaa ggtgccggaa acgcagagga cgcggcagaa acgcgctgag
     1381 ggcctctcag ggggtgcggg caagggatgt tatggtaaat cagtttttga tcagtagctg
     1441 ttgcagattg tttgagtgcc aatttggtta cagtaagttg ttttaggtga tgtgctttgc
     1501 atattttgaa tcgactgcaa cgcctgctga tctgctatgg ctttttgttg tactgctatc
     1561 tccatctgtt tttcatatct ctgtgcctcg atggtgtctt gatagatttt tgcgcgcaaa
     1621 aggttgcagc cttcctgtgt tatcttgatt ttttttacat cttgatgtcc ttgcgccaag
     1681 aggtttgagt aacgaacgta gtcatatgtc catgaactta agaacaagga tatgttggaa
     1741 tgtgcctgac cggcttcctg tgctgtaatg aagttggagt ttaagcaggc gtcagaggca
     1801 acctcaactt ttgcgaattt ttcgtaatta gcatctggca tttgcggttt tgtttgagcg
     1861 caaccagcaa gtaaaaaaaa cggaatgcaa agtaataatg tttttctcat tgagtttttt
     1921 atcccttttt gacaagaaaa aactaatgcc ccgtggttgg tatataaaaa atcacgggga
     1981 gcatagcgat cttcgtccta cttaataacc taaa
//
