LOCUS       NZ_AP027985             1449 bp    DNA     circular CON 25-JUN-2023
DEFINITION  Escherichia coli strain VE-V11-M plasmid pVE-V11-M_7, complete
            sequence.
ACCESSION   NZ_AP027985
VERSION     NZ_AP027985.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00587241
            Assembly: GCF_030162195.2
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Suzuki,M., Vu,T.M.H. and Kasuga,I.
  TITLE     Whole genome sequencing of colistin-resistant Escherichia coli
            isolated from Vietnam
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1449)
  AUTHORS   Suzuki,M., Vu,T.M.H. and Kasuga,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (05-APR-2023) Contact:Masato Suzuki National Institute of
            Infectious Diseases, Antimicrobial Resistance Research Center; 4-2-1
            Aobacho, Higashimurayama, Tokyo 189-0002, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Coverage                   :: 1249x
            Sequencing Technology             :: Illumina MiSeq; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 06/23/2023 18:09:47
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,835
            CDSs (total)                      :: 4,713
            Genes (coding)                    :: 4,363
            CDSs (with protein)               :: 4,363
            Genes (RNA)                       :: 122
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 350
            CDSs (without protein)            :: 350
            Pseudo Genes (ambiguous residues) :: 0 of 350
            Pseudo Genes (frameshifted)       :: 214 of 350
            Pseudo Genes (incomplete)         :: 157 of 350
            Pseudo Genes (internal stop)      :: 52 of 350
            Pseudo Genes (multiple problems)  :: 65 of 350
            Pseudo Genes (short protein)      :: 4 of 350
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP027985.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1449
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="VE-V11-M"
                     /db_xref="taxon:562"
                     /plasmid="pVE-V11-M_7"
                     /geo_loc_name="Viet Nam:Hanoi"
                     /lat_lon="20.95329501 N 105.83197885 E"
                     /collection_date="2020-07-03"
     gene            join(1355..1449,1..13)
                     /locus_tag="QQK36_RS24165"
     CDS             join(1355..1449,1..13)
                     /locus_tag="QQK36_RS24165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="WP_001295224.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
                     /name="type I toxin-antitoxin system toxin Ldr family
                     protein"
     gene            389..496
                     /locus_tag="QQK36_RS24170"
     CDS             389..496
                     /locus_tag="QQK36_RS24170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="WP_001295224.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
                     /name="type I toxin-antitoxin system toxin Ldr family
                     protein"
     gene            872..979
                     /locus_tag="QQK36_RS24175"
     CDS             872..979
                     /locus_tag="QQK36_RS24175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="WP_001295224.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
                     /name="type I toxin-antitoxin system toxin Ldr family
                     protein"
ORIGIN
        1 caagcggaag tagcgtgtca tgtgggcgtc aggctgccgt aatggcaatt tgcgcccgga
       61 ccaggccgca ggagtgaaac tctgcggcct ttttcgtaag aaaaatgcaa cggttgcaag
      121 cggataatat tctgcggaat gcgcagcaca gagtgaagat gagacggatt ccggaacaga
      181 aaaacagtcg tagaatcagc gtcaagccgg aaggattccg gtgaggcgca atgttgcggg
      241 ggcttaatcc ctggtggcat tggttgctgg agagagaaaa cccccgcacg ttgcaggtat
      301 gcacctgaca acaccacggg ggccattctt gcatccaaac aatacaagaa tagccgcgaa
      361 acgttgtcat tacaatacag gcggctatat gacgctcgca gaactgggca tggccttctg
      421 gcatgattta gcggctccgg tcattgctgg tattcttgcc agtatgatcg tgaactggct
      481 gaacaagcgg aagtaacgtg ccatgcgggc gtcaggctgc cgtaatggca atttgcgccc
      541 ggatcaggcc gcaggggtga aactctgcgg cctttttcgt aagaaaaatg caacggttgc
      601 aagcggataa tattctgcgg aatgcgcagc acagagtgag taagtgatgg attccggaac
      661 agaaaaacag tcgtagaatc agcgtcaagc cggaagggtt ccggtgaggc gcaatgttgc
      721 gggggcttta tccctggtgg cattggttgc tggagagaga aaacccccgc acgttgcagg
      781 tatgcacctg acaacatcac gggggccatt cttgaacctg aacaactcaa gaatagccgc
      841 gaaacgttgt cattacaaca caggcggcta tatgacgctc gcagaactgg gcatggcctt
      901 ctggcatgat ttagcggctc cggtcattgc tggcattctt gccagtatga tcgtgaactg
      961 gctgaacaag cggaagtaac gtgtcatgcg ggcgtcaggc tgccgtaatg gcaatttgcg
     1021 cccggaccag gccgcagggg tgaaactctg cggccttttt cgtaagaaaa atgcaacggt
     1081 tgcaagcgga taatattctg cggaatgcgc agcacagagt gagtaagtga tggatttcgg
     1141 aacagaaaaa cagtcgtaga atcagcggca agccggaaag gttccggtaa ggcgcaatgt
     1201 tgcgggggct ttatccctgg tggcattggt tgctggagag agaaaacccc cgcacgttgc
     1261 aggtatgcac ctgacaacat aacgggggct aatcttgaac ccaaacaact caagaatagc
     1321 cgcgaaacgt tgtcattaca acacaggcgg ctatatgacg ctcgcagagc tgggcatggc
     1381 cttctggcat gatttagcgg ctccggtcat tgctggcatt cttgccagta tgatcgtgaa
     1441 ctggctgaa
//
