LOCUS       NZ_AP027828             1465 bp    DNA     circular CON 04-APR-2024
DEFINITION  Escherichia coli strain 2017.17.01CC plasmid p2017.17.01CC_6,
            complete sequence.
ACCESSION   NZ_AP027828
VERSION     NZ_AP027828.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00562603
            Assembly: GCF_036505675.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hoang,H.T.T., Yamamoto,M., Calvopina,M., Bastidas-Caldes,C.,
            Khong,D.T., Nguyen,T.N. and Yamamoto,Y.
  TITLE     Comparative genome analysis of colistin-resistant Escherichia coli
            strains possessing mcr isolated in Ecuador and Vietnam
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1465)
  AUTHORS   Yamamoto,Y. and Hoang,H.T.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2023) Contact:Yoshimasa Yamamoto The United
            Graduate School of Drug Discovery and Medical Information Sciences,
            Gifu University; Yanagido 1-1, Gifu 501-1194, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Coverage                   :: 67x
            Sequencing Technology :: MGI DNBSEQ-G400RS; ONT MinION Mk1c
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036505675.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 00:10:44
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,673
            CDSs (total)                      :: 4,556
            Genes (coding)                    :: 4,337
            CDSs (with protein)               :: 4,337
            Genes (RNA)                       :: 117
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 219
            CDSs (without protein)            :: 219
            Pseudo Genes (ambiguous residues) :: 0 of 219
            Pseudo Genes (frameshifted)       :: 59 of 219
            Pseudo Genes (incomplete)         :: 140 of 219
            Pseudo Genes (internal stop)      :: 49 of 219
            Pseudo Genes (multiple problems)  :: 30 of 219
            Pseudo Genes (short protein)      :: 4 of 219
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP027828.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1465
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="2017.17.01CC"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p2017.17.01CC_6"
                     /geo_loc_name="Viet Nam:Thai Binh"
                     /collection_date="2017"
     gene            join(982..1465,1..386)
                     /locus_tag="AABJ82_RS23365"
     CDS             join(982..1465,1..386)
                     /locus_tag="AABJ82_RS23365"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phasyl DNA replicon protein arp"
                     /protein_id="WP_174243766.1"
                     /translation="MLLKKDRFGKLTSETLNAIAQTGVREAIADLPCLYRNNSIEITDK
                     TPSKPLSPAAFELSTNLKKSASALAWNVQHFVDTYGLSNVGFLTLTFRDHVTDPKEAQR
                     RFNSLKSNVLASRYRAYIRVMEPMKSGRIHYHLLVALDSDIRTGFDFVAVKNQDYSTAN
                     KAIRAEWSFWRKTAPKYRFGRTELMPVRSNSEGIGRYVGKYISKGIESRTEQFKGTRLV
                     EYSRKAKIASTRFQFVTEGSAEWRRKLAIFVHYIADNTGCEPSFEGLRRVLGARWSYHW
                     REFILSLT"
                     /name="phasyl DNA replicon protein arp"
ORIGIN
        1 ctaacaaggc gatccgtgcc gagtggtcat tctggcgcaa aactgccccc aaataccgat
       61 ttgggcgtac cgaactgatg cccgttcgtt caaattcaga gggtattggg cgttacgttg
      121 ggaaatacat ttctaagggc atagaatcgc gtacagagca atttaaaggg actcggctgg
      181 ttgagtattc ccgtaaagct aaaatcgctt ctacgcgctt ccagttcgtt acagagggtt
      241 ctgctgagtg gcgtcgtaag ttagctatct tcgttcatta catcgctgac aatacgggtt
      301 gcgagccatc ttttgagggt cttcgccgtg ttttaggtgc gcggtggtct tatcactggc
      361 gcgaatttat tttatcactc acctaacacc tgtacttttt tctcaaatct gcaattccgc
      421 ctcacgctgc cagattaaaa tctgacagcc ctcaccgttg ctgaattgtc aatttctaaa
      481 tcgggggatc cctttagggt tccgatttag tgattgtaca acactacccc ccccgacact
      541 ttcgataggt gatggatcac atggtgagcc atcgccctgt taaaccgctt ttcaagtgca
      601 gtgaatgtaa tactgcactt tcgtctcatt ctgcgattac tcatgcactc atgtattcat
      661 gtaaaacagc gaacaaagcc tggtcatttt tttggagcga aggctgattt acggataccc
      721 ccgcagcggt gcgaggaggt atccgtaaat cagattttgc gagaaaaaca ctggtaagac
      781 agtgattgat gatttaggtg aatttttgcg gtattctttt tggcggtcgt gtattgatta
      841 taaataattt ttagcgggag ttgcgcaccg caccttactc atacgatgaa atggaaaccc
      901 ccgcaagagc ggcaaactct tcgggggcat gaccacctac agaaattcgt tttcgacact
      961 cagactctag gtgatggact aatgctactt aaaaaagatc gcttcggcaa actcacttct
     1021 gaaactctta acgccattgc tcaaactggc gtcagggagg cgatagccga ccttccttgt
     1081 ctatatagaa acaactcaat cgagattacc gacaaaacac cttccaaacc cttgtcacct
     1141 gcggcttttg agctttctac aaacctcaaa aaatctgcct cggctctggc gtggaatgta
     1201 cagcatttcg ttgacaccta cggcctttca aacgttggtt ttttaaccct gacatttcgt
     1261 gaccacgtta ccgatcccaa agaagcacaa cgccgtttta actctcttaa aagcaatgtt
     1321 ttggcctcgc gttaccgggc ttatattcgc gtcatggagc ctatgaagtc cggtcgcatc
     1381 cattatcatt tgcttgttgc tctcgattcc gacatccgaa ccggctttga tttcgtagcc
     1441 gtcaaaaatc aggattactc aaccg
//
