LOCUS       NZ_AP027782             1589 bp    DNA     circular CON 04-APR-2024
DEFINITION  Escherichia coli strain 2017.03.04CC plasmid p2017.03.04CC_7,
            complete sequence.
ACCESSION   NZ_AP027782
VERSION     NZ_AP027782.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00562590
            Assembly: GCF_036504195.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Hoang,H.T.T., Yamamoto,M., Calvopina,M., Bastidas-Caldes,C.,
            Khong,D.T., Nguyen,T.N. and Yamamoto,Y.
  TITLE     Comparative genome analysis of colistin-resistant Escherichia coli
            strains possessing mcr isolated in Ecuador and Vietnam
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1589)
  AUTHORS   Yamamoto,Y. and Hoang,H.T.T.
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAR-2023) Contact:Yoshimasa Yamamoto The United
            Graduate School of Drug Discovery and Medical Information Sciences,
            Gifu University; Yanagido 1-1, Gifu 501-1194, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.4.8
            Genome Coverage                   :: 83x
            Sequencing Technology :: MGI DNBSEQ-G400RS; ONT MinION Mk1c
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_036504195.1-RS_2024_04_04
            Annotation Date                   :: 04/04/2024 00:15:21
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,598
            CDSs (total)                      :: 4,486
            Genes (coding)                    :: 4,081
            CDSs (with protein)               :: 4,081
            Genes (RNA)                       :: 112
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 405
            CDSs (without protein)            :: 405
            Pseudo Genes (ambiguous residues) :: 0 of 405
            Pseudo Genes (frameshifted)       :: 170 of 405
            Pseudo Genes (incomplete)         :: 225 of 405
            Pseudo Genes (internal stop)      :: 49 of 405
            Pseudo Genes (multiple problems)  :: 37 of 405
            Pseudo Genes (short protein)      :: 4 of 405
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP027782.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1589
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /strain="2017.03.04CC"
                     /isolation_source="feces"
                     /host="Homo sapiens"
                     /db_xref="taxon:562"
                     /plasmid="p2017.03.04CC_7"
                     /geo_loc_name="Viet Nam:Thai Binh"
                     /collection_date="2017"
ORIGIN
        1 ggaccgccaa ctggtgtggc tggtcagccc cggtaaagag gctaatccca gggtggctca
       61 ggagtggctg acgctgctgc aaaaatccgc tgcgctcggc gacattaaag ggccaatgga
      121 tgccgccagc cagcaggcgt ggggagcgtt tttctggcag caccgcaacg gcctgattga
      181 ccccgacacc cgcgcccgcc tgcaaaatgg cggcgaagcg caggcgaagt ggatcctctc
      241 ccagctttat tctgcgttct ccggggtaag cggcaaggag ctgcaaaacg atccgctgat
      301 gttaatgcgc ggctcgcagc tggcgatggc gaaaaatggc cagcgtttac gactaatgga
      361 cggctggctg gtgacgcagg atccccaggg ccattactgg tatctgctgc acggcgaact
      421 ggcgggatcg tcgtttgata tgcagcaaac ccaccagctc atcacgaccc tgaatacgct
      481 ggaaaaggct ctgaaaacgc gttacccgca ggcgcagttg ctctcacgcg gcacggtgtt
      541 ttacagcgat tacgccagcc aacaggcgaa gcaggatatc tccaccctgg gcgtggcaac
      601 gctgctgggg gtgatattgc tgattgtggc ggtgttccgc tctttgcgcc cgttgctgct
      661 ttgcgtgatt tccatcggca tcggcgcgct ggcgggaacg gccgccacat tgttgatttt
      721 cggtgaatta cacctgatga cgctggtgat gagcatgagc gttatcggca tttccgctga
      781 ctacacgctc tattatctca ccgagcggat ggtgcacggc aacgacgttt cgccgtggca
      841 aagcctggcg aaagtacgca atgccctgct gctggcgctg ctcacaaccg tggcggcata
      901 tctgattatg atgctcgccc ccttccccgg cattcgccag atggcgattt ttgccgccgt
      961 cgggttgagc gcctcctgtc tgaccgtcct gttctggcat ccgtggctgt gccgtggtct
     1021 gccggtgcgc ccggttccgg cgatggcgct gatgctacgc tggctggcag cgtggcggcg
     1081 caataaaaaa ctgtcgcggg gtctgcccgt tgcgctggcg ctgttttcgc tggcggggat
     1141 gtcaatgctg cgcgtcgatg acgatatctc gcagttacag gcgctgccgc agcacattct
     1201 ggcgcaggag aaagccatta ccgccctgac cggacaaagc gtcgatcaaa aatggtttgt
     1261 agtttacggc gactccccac agcaaacatt gcggcgactg gagaaatata ccgcctcact
     1321 tgagtatgcg aaaaaagagg ggcttatcag caactaccgc actattccgc tgaactccct
     1381 ggcgcggcag gaggaagact tagacctgct gaaaacggct gccccgacgg taacaaaagc
     1441 actgcaaaat gcagggctga cggcggtgaa accagatctc aacgccatgc cggtgaaggt
     1501 cgatgaatgg ctggcaagcc ccgccagtga aggctggcgt ctgctgtggc tgacgctgga
     1561 aaacggcgaa agcggtgtac tggtgccgg
//
