LOCUS       NZ_AP026960             1718 bp    DNA     circular CON 27-NOV-2023
DEFINITION  Salmonella enterica strain SE20-72C-2 plasmid pSE20-C72-2-12,
            complete sequence.
ACCESSION   NZ_AP026960
VERSION     NZ_AP026960.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00515066
            Sequence Read Archive: DRR396386, DRR396387
            Assembly: GCF_025999715.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Nakayama,T., Yamaguchi,T., Phuc,N.D., Chinh,D.V., Jinnai,M.,
            Kumeda,Y. and Hase,A.
  TITLE     Complete genome sequence of Salmonella enterica SE20-C72-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1718)
  AUTHORS   Nakayama,T. and Yamaguchi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2022) Contact:Tatsuya Nakayama Hiroshima
            University, Graduate School of Integrated Sciences for Life; 1-4-4
            Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8528, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Coverage                   :: 187x
            Sequencing Technology             :: Illumina iseq; Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/27/2023 03:37:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,087
            CDSs (total)                      :: 4,969
            Genes (coding)                    :: 4,785
            CDSs (with protein)               :: 4,785
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 66 of 184
            Pseudo Genes (incomplete)         :: 133 of 184
            Pseudo Genes (internal stop)      :: 28 of 184
            Pseudo Genes (multiple problems)  :: 40 of 184
            Pseudo Genes (short protein)      :: 1 of 184
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026960.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1718
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SE20-72C-2"
                     /isolation_source="Gut content of Anabas testudineus"
                     /host="Anabas testudineus"
                     /db_xref="taxon:28901"
                     /plasmid="pSE20-C72-2-12"
                     /geo_loc_name="Viet Nam:Ho Chi Minh City"
                     /collection_date="2020-03-18"
     gene            join(1525..1718,1..43)
                     /locus_tag="OO990_RS25415"
     CDS             join(1525..1718,1..43)
                     /locus_tag="OO990_RS25415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016230891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_016230891.1"
                     /translation="MTRLTNLTPAEKKFIDDAIAAAERAAGKKLNQPNRHIVLNRARAQ
                     IESQRYADRQRALREDERQQSDFAWSRPRAPRR"
                     /name="hypothetical protein"
     gene            257..661
                     /locus_tag="OO990_RS25420"
                     /old_locus_tag="SE2072C2_48910"
     CDS             257..661
                     /locus_tag="OO990_RS25420"
                     /old_locus_tag="SE2072C2_48910"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_061604172.1"
                     /translation="MKILAAMEIADCDFEHMDMDVLVGALLKLKLWDSHHHNLNMQGKR
                     SFLDDLRADGIEAIKKYEAEIESENESFAEERLILRIYQNELGLWLGRLFCGEAEIGQC
                     GVYGSADEVRTAARQSGILCDSIEIFQKDA"
                     /name="hypothetical protein"
     Typing          1284..1368
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="100.0"
                     /evalue="3.06e-32"
ORIGIN
        1 gtccgatttt gcctggtcac gtccgcgcgc gccgcgccgc tgattgcgga ttttggcggt
       61 ttagtggtgc tgatgctgcg aaatcacctg cggttcaccc gcgtgcatag ctatgcagtc
      121 gcgcagaaat catcaggggc gtttttccgg gatgtgggtg aggaaatgtg ccggaaacgg
      181 ctctgatgcg tcagaattgc gctgagggcc tgtcaggggg tgctgataac ggatgttatg
      241 gtaaatcgga gggtgtatga agattttggc tgcaatggaa atagctgatt gtgattttga
      301 acatatggat atggatgtct tagtaggggc tttactgaaa ttaaaattgt gggatagcca
      361 ccatcacaac ttgaacatgc aaggtaagag gagctttctc gatgatttaa gagcggatgg
      421 tattgaggct attaagaaat acgaggctga aattgaatct gagaatgagt cctttgcgga
      481 ggagcgatta atactgagga tctatcagaa cgagcttggc ttatggttag ggaggctctt
      541 ttgtggtgag gctgagatcg gtcagtgtgg tgtttatgga tcggctgatg aggttcgaac
      601 agctgcgcgt caaagcggta ttttgtgcga tagcatcgaa atttttcaaa aggatgccta
      661 atgcccccgt ggtgggtaca ccagaaaacg gggagcggag cgaccagcgt caggtcgttc
      721 tatgttgttc tgattgtgtg ggtgttgtgc cagactgggc aatcgcattt caccgcaact
      781 cctgccttga atctcacttt atcaggtgcc tgttatcgta cagcgagacg gggtagagct
      841 taactctttc gcggttaagt tacgtttcca ccgtttgcct gtttatcctg ccggagtccg
      901 gggcgtagac ctgagtttca agggtgcaga tatgatttta atgtcgttga atggtattaa
      961 gctggtagtg acaaggctag ccagccctgc taggatagga ttgctacgtc tgatcctggc
     1021 aggtatctgc gaagaattag agtaccgaag ccctgtgatt ctgtcacggg gcttttgtac
     1081 atctgtagcc tgatctttca acaagatccc cgtcacacct cacttcatgt atgtgaaaaa
     1141 agttgtagtg cccgccgcag tctcacgtcc ggagcgtagc gaccgagtga gcgaggaggc
     1201 atcatttcac tattcgggca tggtattgcg gacgcttctg agccacatat cacacctgcc
     1261 acatgacgca ctttcctgat aaccgcacct atgccaacat attaagccag tatacactcc
     1321 gctagcgcta cgtgactggt tcagggctgc gccccgaaac ccgctaaatc cactgacgcg
     1381 cctgcggctt gtccaacgcc tcacggcacc ggattaaaat ccgctcccgt tcaccgtttc
     1441 tgactgcctt tcaccgtcgc ttacgcttca tcgttcctac tgtgtctggc agactgcagg
     1501 ggctattctc atacggagat aaacatgacg agactgacaa acctgacccc cgctgagaaa
     1561 aagtttatcg acgacgctat agccgctgcc gaacgtgcgg ccgggaagaa gctcaatcag
     1621 cctaaccggc acatcgtcct gaacagagcg cgtgcgcaga ttgagtcgca gcgttacgcc
     1681 gaccgccagc gtgcattacg tgaggatgag cggcagca
//
