LOCUS       NZ_AP026958             2864 bp    DNA     circular CON 27-NOV-2023
DEFINITION  Salmonella enterica strain SE20-72C-2 plasmid pSE20-C72-2-10,
            complete sequence.
ACCESSION   NZ_AP026958
VERSION     NZ_AP026958.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00515066
            Sequence Read Archive: DRR396386, DRR396387
            Assembly: GCF_025999715.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Nakayama,T., Yamaguchi,T., Phuc,N.D., Chinh,D.V., Jinnai,M.,
            Kumeda,Y. and Hase,A.
  TITLE     Complete genome sequence of Salmonella enterica SE20-C72-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 2864)
  AUTHORS   Nakayama,T. and Yamaguchi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2022) Contact:Tatsuya Nakayama Hiroshima
            University, Graduate School of Integrated Sciences for Life; 1-4-4
            Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8528, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Coverage                   :: 187x
            Sequencing Technology             :: Illumina iseq; Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/27/2023 03:37:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,087
            CDSs (total)                      :: 4,969
            Genes (coding)                    :: 4,785
            CDSs (with protein)               :: 4,785
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 66 of 184
            Pseudo Genes (incomplete)         :: 133 of 184
            Pseudo Genes (internal stop)      :: 28 of 184
            Pseudo Genes (multiple problems)  :: 40 of 184
            Pseudo Genes (short protein)      :: 1 of 184
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026958.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2864
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SE20-72C-2"
                     /isolation_source="Gut content of Anabas testudineus"
                     /host="Anabas testudineus"
                     /db_xref="taxon:28901"
                     /plasmid="pSE20-C72-2-10"
                     /geo_loc_name="Viet Nam:Ho Chi Minh City"
                     /collection_date="2020-03-18"
     gene            226..1392
                     /locus_tag="OO990_RS25395"
                     /old_locus_tag="SE2072C2_48860"
     CDS             226..1392
                     /locus_tag="OO990_RS25395"
                     /old_locus_tag="SE2072C2_48860"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_050394550.1"
                     /translation="MSYQFIHIEDYGINISKKRSNNGTSEKYKKETKGRSVSQIISEAK
                     RDNGFCSHVEKPEDPIILYGKSLDEVEKLAMEYHSKTKIIDKNGKEKKLRSDANVLLAG
                     VISLNRENMEIWEDYKNDSIAYLKNKYGKKLISVIEHTDEEHPHIHFYCIQDIGKKFDL
                     IHDGKKALHENKDKKKHDQNIAYLDSMRAFQEDFFKVVSSNYGLSKDGPRRARMSRSDY
                     FKLGREVKLINQVKLKAKKDGYKFAIDEFESKNWLNKITASITFNKDSLNEAISRGNKY
                     KKSLSSKTKKLKELEDIETKYNDLRKDFKLRVNNQTENLRNKNNTLEYENENIKNKNKE
                     LEEENKKLKTTLEETSPLYELLKNKFGDQFEEWKNNLFKSFRSKIKPK"
                     /name="plasmid recombination protein"
     gene            1824..2795
                     /locus_tag="OO990_RS25400"
                     /old_locus_tag="SE2072C2_48880"
     CDS             1824..2795
                     /locus_tag="OO990_RS25400"
                     /old_locus_tag="SE2072C2_48880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000427687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_102063771.1"
                     /translation="MGRLYNKKDNVKFENLSDRSEKDKVWDTHRKDCDLVSALYFQSAE
                     FERYFERMEDCSGRLEFNQLLDRETGEIKIKLTNAHFCRVRHCPVCQWRKSLMWKAKFY
                     KALPGIEAEYKSARWMFLTLTVENCEITDLKNTLSHMNKSFKKMISRKHFIKYNLGFVK
                     TTEITRSKDGKAHPHFHILLMMNSSYFKYGYLKTSDWAELWRDCLGVSYTPITDVRTVK
                     VKNGGDASRSALADAVAETLKYAVKPSDMTKDREWFHELTRQVFKLRFVSTGGVLKDLF
                     KEETSEEDLLLLTEEEETDKELGSLYFNWYKTKAKYRRKITE"
                     /name="protein rep"
ORIGIN
        1 ttttatcaaa catactaacg attatagttt gtataaaaac actaatcggg aagtaataaa
       61 aaaggcacct gtaagggtgc tttttttatg cctttgattt tagcctccgg caggaccgcg
      121 tttattggga accaataaac atagtcggtt cctatgtatt tacaaaaacg ggaaatatgc
      181 taaaaaatat atataggaaa aaatataaaa gcaggggtaa atataatgtc atatcagttt
      241 atacatattg aagattacgg gataaatata tctaaaaaaa ggagtaataa cggaacgagt
      301 gaaaaataca aaaaagaaac aaaaggaaga tccgttagtc aaataatatc agaagcaaaa
      361 agagacaatg ggttttgttc tcatgttgaa aagccagaag atccgattat tttatatggt
      421 aagagtttag atgaagttga aaaactcgct atggaatacc atagtaaaac aaagataata
      481 gataaaaacg ggaaagagaa aaaattaaga tctgatgcta atgttttact cgctggagtt
      541 atttctttaa atcgtgaaaa tatggaaata tgggaagatt ataaaaatga ctcgatagct
      601 tatttgaaaa ataagtatgg taaaaagctt atatcagtta ttgaacacac tgacgaggaa
      661 catcctcaca tacattttta ttgtattcag gatataggta aaaagtttga tttgatacac
      721 gacggaaaaa aagcattgca tgaaaataaa gataagaaaa aacacgatca aaatatagct
      781 tacttggatt caatgagagc ctttcaagag gattttttca aagttgtaag ctctaactat
      841 ggcttgtcga aagacggccc cagaagggct agaatgagtc gttctgacta cttcaagctt
      901 ggtagagaag taaagttgat taatcaagta aagttaaaag caaaaaaaga tggttataaa
      961 tttgcaatag acgaattcga aagtaagaac tggttaaata aaataacagc aagtattact
     1021 tttaataaag actcattaaa tgaagctatt tctcgtggta ataaatacaa aaaatcgctt
     1081 agtagtaaaa ctaaaaaact aaaagaactt gaagatatag aaactaaata taatgatctg
     1141 agaaaggatt ttaaacttag ggttaataat caaactgaaa acctaagaaa taaaaataac
     1201 actcttgaat atgaaaatga aaatataaag aacaaaaaca aagaacttga ggaagaaaat
     1261 aaaaaactaa aaaccactct tgaagaaact tccccactct acgagctatt aaaaaataag
     1321 tttggggatc agtttgagga atggaaaaat aacttgttta aatcttttag atccaaaata
     1381 aaacctaaat agttaaatag tcaataagaa tggcgggggg tcccctctgg ggttccgcta
     1441 ttgttgttga ctacacaccc accaatacac ttccaatggt gtaaggagag caaagcgacc
     1501 cttacacctg ttaagccggt tttaagctct tagaagccct ctggaagcct cagaaggctt
     1561 ctggcttgtg gtttggtggg tttgttccag tggtggtttt gggtgttaaa aacagcctcg
     1621 cagagggtga ttttccttta cttgatacct taggcataac ttccgggaga aagaaaggct
     1681 gaaaataggg ggctagccct tgtgccgtaa ggctttgaag tgttttggaa aggttgaaaa
     1741 atgtcgaaca gttgacaaaa aaaaatcctc tgttagcttt ggacttgcga cggtaccaaa
     1801 acaaacagag gatctgtatt tctatgggaa gattatataa taaaaaagat aatgtcaagt
     1861 ttgaaaattt atcagataga tcggaaaaag ataaagtatg ggatactcac aggaaagact
     1921 gtgatttagt ttctgcatta tattttcagt cagcggagtt tgaaagatac tttgaacgaa
     1981 tggaagattg ttccggccgt ttagagttta atcaactttt agatcgtgaa accggtgaaa
     2041 taaaaataaa actaacaaac gcacattttt gccgagtaag acattgcccc gtttgtcagt
     2101 ggagaaaatc acttatgtgg aaagcaaaat tttataaagc acttcccgga atcgaggcag
     2161 aatataaatc tgcccgatgg atgtttctta cactgacggt tgaaaactgt gaaataacag
     2221 atctaaaaaa tactctttcc catatgaaca aatcatttaa aaaaatgatt agtaggaaac
     2281 atttcataaa atataatttg ggttttgtta aaacaactga aataacaaga tcgaaggatg
     2341 gaaaagcaca tccacatttt cacatattgc ttatgatgaa tagtagttat tttaaatatg
     2401 gttatttgaa aaccagtgat tgggctgaac tctggaggga ttgcttaggt gtatcgtata
     2461 cacctatcac tgatgtaaga acggttaagg tcaagaacgg cggcgatgcc agtcgttcgg
     2521 ctcttgctga tgctgtagct gaaactttga agtatgccgt caaaccaagc gatatgacta
     2581 aggatcgtga atggtttcac gagctgacaa ggcaagtttt taaattaagg ttcgtatcaa
     2641 ctggtggagt attgaaagat ttattcaagg aagaaacttc cgaagaagat ttattattac
     2701 taacagaaga agaagaaaca gacaaagaac ttggatcgtt atattttaac tggtataaaa
     2761 caaaagcaaa atacagaaga aaaataacag aatgataaat agtagtgatt ataaaaaata
     2821 atataaggag aatattatga tcactgctat aactgtaata tcta
//
