LOCUS       NZ_AP026954             5444 bp    DNA     circular CON 27-NOV-2023
DEFINITION  Salmonella enterica strain SE20-72C-2 plasmid pSE20-C72-2-6,
            complete sequence.
ACCESSION   NZ_AP026954
VERSION     NZ_AP026954.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00515066
            Sequence Read Archive: DRR396386, DRR396387
            Assembly: GCF_025999715.1
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica
  ORGANISM  Salmonella enterica
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Salmonella.
REFERENCE   1
  AUTHORS   Nakayama,T., Yamaguchi,T., Phuc,N.D., Chinh,D.V., Jinnai,M.,
            Kumeda,Y. and Hase,A.
  TITLE     Complete genome sequence of Salmonella enterica SE20-C72-2
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 5444)
  AUTHORS   Nakayama,T. and Yamaguchi,T.
  TITLE     Direct Submission
  JOURNAL   Submitted (20-OCT-2022) Contact:Tatsuya Nakayama Hiroshima
            University, Graduate School of Integrated Sciences for Life; 1-4-4
            Kagamiyama, Higashi-Hiroshima, Hiroshima 739-8528, Japan
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Unicycler v. 0.5.0
            Genome Coverage                   :: 187x
            Sequencing Technology             :: Illumina iseq; Nanopore MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/27/2023 03:37:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,087
            CDSs (total)                      :: 4,969
            Genes (coding)                    :: 4,785
            CDSs (with protein)               :: 4,785
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 184
            CDSs (without protein)            :: 184
            Pseudo Genes (ambiguous residues) :: 0 of 184
            Pseudo Genes (frameshifted)       :: 66 of 184
            Pseudo Genes (incomplete)         :: 133 of 184
            Pseudo Genes (internal stop)      :: 28 of 184
            Pseudo Genes (multiple problems)  :: 40 of 184
            Pseudo Genes (short protein)      :: 1 of 184
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026954.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5444
                     /organism="Salmonella enterica"
                     /mol_type="genomic DNA"
                     /strain="SE20-72C-2"
                     /isolation_source="Gut content of Anabas testudineus"
                     /host="Anabas testudineus"
                     /db_xref="taxon:28901"
                     /plasmid="pSE20-C72-2-6"
                     /geo_loc_name="Viet Nam:Ho Chi Minh City"
                     /collection_date="2020-03-18"
     gene            complement(join(5201..5444,1..2))
                     /locus_tag="OO990_RS25290"
     CDS             complement(join(5201..5444,1..2))
                     /locus_tag="OO990_RS25290"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_062980940.1"
                     /translation="MNIMGFLGFVAKAKPDVDDGGGSLIPAAMGFFICAFFVAIIASVV
                     SSAFRSAKNSADVSINNAKKYHVALIKEQYRRKGGG"
                     /name="hypothetical protein"
     gene            complement(join(5443..5444,1..409))
                     /locus_tag="OO990_RS25295"
     CDS             complement(join(5443..5444,1..409))
                     /locus_tag="OO990_RS25295"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_264879149.1"
                     /translation="MNNIRPNLNPVREGTADMMNRLNFYDTSFACLHFLMIDFDNDMQE
                     MKRKKDFHPLMLLNKHDRASLDLEVRNIIRVSLASKMLDIQSDELLDADLYFHKKDELD
                     IGEDARIIAYVFRDFVKQRIETAIKNLEGKNI"
                     /name="hypothetical protein"
     gene            complement(402..743)
                     /locus_tag="OO990_RS25300"
                     /old_locus_tag="SE2072C2_48630"
     CDS             complement(402..743)
                     /locus_tag="OO990_RS25300"
                     /old_locus_tag="SE2072C2_48630"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_062980946.1"
                     /translation="MAFNIEKYNKVKKELEQKANLLNRMEQEMKAEKRKEDAARKIKVG
                     AELIRIVRENNIETLDFANDISLLVGALTNNLILKRIHDQREFLRVEGDKRLNEWKLKN
                     NKKRSKTDE"
                     /name="hypothetical protein"
     gene            1086..2240
                     /gene="mobQ"
                     /locus_tag="OO990_RS25305"
                     /old_locus_tag="SE2072C2_48640"
     CDS             1086..2240
                     /gene="mobQ"
                     /locus_tag="OO990_RS25305"
                     /old_locus_tag="SE2072C2_48640"
                     /inference="COORDINATES: protein motif:HMM:NF041496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobQ family relaxase"
                     /protein_id="WP_264879150.1"
                     /translation="MAIFHMSAQTITRSKGHSSVAAAAYRHGEKLTDEHTGEIHDYSKK
                     KGISDSVILIPQGADQRFLKPEYLWNTIEKSEKRKDAQLAREFNIALPVEMTDEQKKAL
                     AIDFCNENFVKNGMIADIAFHKLDSDNPHFHVMLTTRKLTPDGSGFGQKVREWNSKEQL
                     QEWRKSWADTANEHMQRAGIDARIDHRSLKDQKAELDAIPSPTVEQQAQAISLDRPPTI
                     HRGHSGNPERQERFDALQEVKVSQEAKALNHIGQNTLKPSPPAPASSPTASLPDAKQGG
                     KKTGSAAATVSGSNINLVDETTDKNLHLTEAQREELEEAENKEAAAKKKAYLSGGAGVP
                     EISETNKIQSNTDFKNKLRKVKTAINKEDEEEENNHKINRPRLK"
                     /name="mobQ"
     gene            complement(2257..3948)
                     /locus_tag="OO990_RS25310"
                     /old_locus_tag="SE2072C2_48650"
     CDS             complement(2257..3948)
                     /locus_tag="OO990_RS25310"
                     /old_locus_tag="SE2072C2_48650"
                     /inference="COORDINATES: protein motif:HMM:NF013603.3"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0006260 - DNA replication [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_047201407.1"
                     /translation="MLSEERLSAIRAKVNRANSSQNKKSATLSSVSINGDRITERKKES
                     FKTANSFIIRGKIEENETLKKRGERSLNCAQQRYIVVVNGKAHTVFTHRCRSRHCQNCQ
                     RIKAFVWQEKMKEIFPDLISKYPNHKYLFITFTVKNPKLKNLKSVLICMSRAYAKMFQR
                     KAFKKWFVGDIRSTEITRGNSGEDEAHPHFHALICVHPTYFKGSNYMSADVWGQNWGEC
                     LESEFKKEGLEYNAADYPKGFPRVDIRLAKSADRKTDITNKNITEHGEQLINYVLKYSV
                     KGSDLLKNGKADAWFWEFDKQVKNIRMIAASGDIKKSLAKLERDQFDYYHEQEKIEKLI
                     ADDVNFKADKAVFKKESDYDYYLESKKDKFQYIIEAIEAKAYNYQCYYKALLSDHLLAF
                     RSGIDGIIENFRKINKTKTREDFEILEAAEQELVKIQCERIERLRFICDALVRVGLYKK
                     MSDFVYMNIHTNEKTVIVKNNIVDILKAAEQKLLNDFKQSFMRLESAKTQDVFNAIVEN
                     VNEKSALIKLVRNEILAAGAYAYDADNLEYIDLETNERLEVIATIE"
                     /name="protein rep"
     gene            complement(4750..5199)
                     /locus_tag="OO990_RS25315"
                     /old_locus_tag="SE2072C2_48660"
     CDS             complement(4750..5199)
                     /locus_tag="OO990_RS25315"
                     /old_locus_tag="SE2072C2_48660"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_062980937.1"
                     /translation="MYYLICGLFMVIFFIACMLSVIYAAEIYQWQHYNAYKFKRWLKSG
                     SIKNDEEQEKIKKEVKKMTIDNILRLLKKYKIDFDANELVKNDFNIKMKYYKLILAEKE
                     RLKENKRLDEAVKQKIKIETDTFDAEKFQKEAEERFKIFMKNRNK"
                     /name="hypothetical protein"
ORIGIN
        1 atatattctt accctctaag tttttaatcg ctgtttctat cctctgtttt acaaagtctc
       61 taaatacata agctattatt cttgcatcct cgccaatatc taactcatct tttttatgaa
      121 aatataaatc agcgtctaaa agctcatcgc tttgaatatc taacatttta cttgcaagtg
      181 atactctaat aatattacgc acctctaaat ctaaacttgc tctatcatgt ttattcaaaa
      241 gcataagcgg atgaaaatct ttttttcttt tcatttcttg catgtcatta tcaaaatcta
      301 tcattagaaa atgcaaacaa gcaaaagacg tatcatagaa gttcagacga ttcatcatgt
      361 ccgccgttcc ttcgcgcaca gggtttagat taggtcttat attattcatc tgtcttgctc
      421 ctctttttat tgttttttaa cttccactcg ttaagtcttt tatcgccttc aactctcaaa
      481 aactcgcgtt gatcgtgtat tctttttaat attagattat tagttaaagc tccaaccaat
      541 aaagaaatat cattagcaaa atccaatgtc tctatattat tttctctaac tatccttatt
      601 agttcagcgc caacttttat tttacgcgct gcatcttctt tccttttttc agctttcatt
      661 tcttgctcca tcctgtttag taagtttgct ttttgctcaa gctctttttt tactttattg
      721 tatttttcta tattaaacgc catgtttcac ctcttttatt ttttgcgatt tctgttatat
      781 atattttagg taatatattt atttatttaa gtaaagcgcg atatatgtat tttttatttt
      841 ccgagcgcga ttttatagat aaaaggttta cgtgcagcgg ctattttagt tttgctaaaa
      901 actacaatag cgcacttata cattcttcga atgtgtgcgc cccatttcat ggggatttac
      961 tgcaatcaaa aaataataat gaatactcgc tttatgctca tattacatta ttgatttttg
     1021 ataatgcaaa aatagtttta cttattttct aatatatgtg ctttcaacaa agaggataaa
     1081 aatatatggc aatattccac atgagcgccc aaacaataac acgcagtaaa gggcatagta
     1141 gcgtagctgc ggcggcttat cgtcatggcg aaaagttaac agatgagcat acaggagaga
     1201 tccacgacta cagcaaaaag aaaggtattt cggatagtgt gatattaata ccacaaggag
     1261 cagatcaaag atttttgaaa cctgaatatt tgtggaacac tatcgaaaaa agcgaaaaaa
     1321 gaaaagatgc gcagttagca cgcgagttta atattgcgct ccccgtagaa atgacagacg
     1381 aacaaaaaaa agcattagca atagatttct gtaatgagaa ctttgtaaaa aatggaatga
     1441 ttgcagatat agcttttcat aagctcgata gcgacaaccc acattttcac gtaatgctaa
     1501 cgacaagaaa gctaaccccg gacggctccg ggttcgggca aaaggtcaga gaatggaaca
     1561 gcaaagagca gctgcaggaa tggcgtaaga gctgggcgga cacagcgaac gagcacatgc
     1621 aaagggctgg catcgatgcg cgtattgatc atcgttcact gaaagaccaa aaagcagagc
     1681 ttgacgctat cccctccccc accgtggagc aacaggcgca ggctatcagc ttagacagac
     1741 cgccgaccat acacaggggg cacagcggca atccagagcg tcaggaacgc tttgacgcgc
     1801 ttcaagaagt gaaagtgtca caagaagcta aagcacttaa ccacatcgga caaaacacgc
     1861 ttaagccctc gcctccggct cctgcttcct cccctaccgc atctttacca gatgctaaac
     1921 agggaggcaa aaaaacaggt tcagcagcgg ctacagtttc aggatctaat atcaatctcg
     1981 tagatgaaac aacagacaaa aatctacacc taacggaagc gcagcgcgaa gagttagaag
     2041 aggcagaaaa taaagaagcg gcagcgaaga aaaaagcata cctcagcggc ggcgctggcg
     2101 ttcctgaaat cagcgaaaca aacaaaatac agtctaatac tgattttaaa aataagctca
     2161 ggaaggttaa aacagctata aataaagaag atgaagagga agaaaacaac cacaaaataa
     2221 atagaccacg tttaaaataa tagctcttgc gagctattac tctatggttg ctataacttc
     2281 taaacgctcg ttagtttcaa gatctatata ttcgagatta tcagcgtcat aagcatacgc
     2341 gccagcggct aaaatctcat ttcttacaag tttaatcagt gctgattttt catttacatt
     2401 ctcaacaata gcattgaata cgtcttgagt ttttgcgctt tcaagtctca tgaaactttg
     2461 cttaaaatcg tttaaaagtt tttgttctgc tgctttcaaa atatctacga tgttattttt
     2521 tacaataaca gttttttcat ttgtatgtat attcatatac acaaaatcag acatcttttt
     2581 atataaaccg actcttacaa gcgcatcaca aataaagcgc aagcgttcta ttctttcgca
     2641 ttgtattttt acaagctcct gctctgctgc ttctaatatt tcaaaatctt ctctcgtttt
     2701 tgttttattt attttgcgaa agttttcaat gatgccatcg ataccacttc taaacgctaa
     2761 aagatggtca gataataacg ctttataata gcattgatag ttatacgctt tagcttcaat
     2821 cgcttcaatg atatattgaa acttatcttt tttactttct aaataataat cgtagtcgct
     2881 ttctttttta aatactgctt tatcagcttt aaagttcaca tcatcagcga ttagtttttc
     2941 aatcttttct tgctcatggt aataatcaaa ctgatcgcgc tcaagtttag cgagtgattt
     3001 tttaatatcg ccacttgctg ctatcattct aatatttttt acttgcttat cgaactccca
     3061 gaaccaagca tcagccttcc cgttcttgag caagtcagaa cctttcacgc tatattttaa
     3121 aacgtagttt ataagctgct cgccatgctc agttatattt ttatttgtaa tatctgtttt
     3181 tctgtctgct gatttagcaa gacgaatatc tacgcgcggg aaaccctttg gataatcagc
     3241 ggcgttatat tctaagcctt cttttttgaa ttcagactct aagcactcgc cccagttctg
     3301 gccccaaaca tcggcgctca tatagttaga gcctttaaaa taagttggat gaacacagat
     3361 caacgcatga aaatgcgggt gcgcttcatc ctctccgcta tttcctcgcg tgatttccgt
     3421 tgatctaata tcacccacga accacttttt aaacgcttta cgttgaaaca ttttagcgta
     3481 agcgcgagac atacaaatca atacagattt tagatttttc agcttaggat ttttaactgt
     3541 aaatgtaata aacaggtatt tgtgatttgg atatttagaa atgagatcgg ggaatatctc
     3601 tttcattttt tcttgccaca cgaaagcctt tattcgttgg cagttttggc aatgacgaga
     3661 gcggcagcga tgagtgaata cggtatgtgc tttgccatta accacgacaa tataacgctg
     3721 ttgagcgcag tttaacgaac gctcaccgcg ttttttaaga gtttcatttt cttcaatctt
     3781 gccgcgaata ataaaactat tcgctgtttt gaaactttct tttttgcgtt cggtgattcg
     3841 atcaccgttt atagaaacgc ttgaaagtgt tgcacttttt ttattttgtg agctattagc
     3901 tctattgact tttgcgcgta tagcgcttaa tctttcctct gaaagcatat aaaaaacccc
     3961 ttattgtatg gaaccgtcgc aagttcaact ctaaggggtt ttttatttct gtcaatcact
     4021 tacacccgct ttgcatacaa atcgaacacc tacgccgccc atcccgaaca cctaaaaccg
     4081 cccaaaagtg cagccccgtc ccatttttgc gcccattttc cgccgctccg ctttgcttca
     4141 tcccaaaaag catgggttaa aagacggttt tttgtggcgt catcccacct tcagccgttt
     4201 atccgaaacc ttttgcagat cacatcccaa tacaggagag gaaagggcga ttttatgcag
     4261 acccgtccca ttttcagcag gaaccggcgc gagtattttt tggttaaaaa atgggcgttt
     4321 cagctaccgc cattgaccaa cagcttttcg agcaaagcca gacacaccaa ggcgtacagg
     4381 ccgatttttg gggttaaaaa aatctgattt gtttcttatt aaacaaggga agcaggtcac
     4441 tcgcttcgct cactcccaaa acccaaaacc aaagggcaag ggcggggcgt caaatgcccc
     4501 ctgactcagc tgcagggctg gcactcccac cacttaacaa acccacccgg aacggcagga
     4561 ggccagcggc cagaggttaa cacaacaagg cagggaagag cttaaaggcg gcttaacagg
     4621 cgaaaggctc gccttgctct cctttcacca tgacaagttt ttttatctgg tgagttgtca
     4681 ataaaaataa aggtatccac ccgcagggtg gaacctcctt gatttttttt gacaagttga
     4741 gatctgagat tatttattgc ggtttttcat gaatatttta aatcgttctt ctgcttcttt
     4801 ctgaaacttt tcagcgtcaa acgtatcagt ttctattttt attttttgtt ttactgcttc
     4861 atctaatctt ttattttctt tcagtctttc tttctcagct aatataagtt tgtaatattt
     4921 cattttaata ttaaaatcat ttttcactaa ctcgttagcg tcaaaatcta ttttgtattt
     4981 cttgaggagt cttaaaatat tatctatagt cattttcttc acttcctttt ttattttttc
     5041 ttgctcctca tcatttttta tacttccact tttaagccaa cgcttaaact tataagcgtt
     5101 gtaatgctgc cactggtaga tctcagcagc atatataaca gaaagcatgc aagcaataaa
     5161 aaatataacc ataaaaaggc cgcatattaa ataatacata tcagcccccg ccttttcttc
     5221 gatactgctc ttttattagt gctacgtgat atttttttgc attattaata ctcacgtctg
     5281 ccgagttttt agcagaacga aaagcactcg aaacaactga cgcaatgata gcgacaaaaa
     5341 aagcacatat aaaaaacccc atagcggcgg gaataagact gccgccgcca tcatccacat
     5401 caggttttgc ttttgctaca aaacccaaaa agcccattat attc
//
