LOCUS       NZ_AP026885             1558 bp    DNA     circular CON 27-NOV-2023
DEFINITION  Enterobacter roggenkampii strain KAM546 plasmid pKAM546_12, complete
            sequence.
ACCESSION   NZ_AP026885
VERSION     NZ_AP026885.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00535933
            Assembly: GCF_025999915.1
KEYWORDS    RefSeq.
SOURCE      Enterobacter roggenkampii
  ORGANISM  Enterobacter roggenkampii
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.
REFERENCE   1
  AUTHORS   Maehana,S. and Suzuki,M.
  TITLE     Complete genome sequence of colistin-resistant Enterobacter spp. in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Maehana,S. and Suzuki,M.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-OCT-2022) Contact:Shotaro Maehana Kitasato university,
            Allied Health Sciences; 1-15-1, Kitasato, Minami-ku, Sagamihara,
            Kanagawa 252-0373, Japan URL
            :https://www.kitasato-u.ac.jp/ahs/english/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 2.1.1
            Genome Coverage                   :: 84x
            Sequencing Technology             :: Illumina HiSeq; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/27/2023 03:21:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,720
            CDSs (total)                      :: 4,606
            Genes (coding)                    :: 4,425
            CDSs (with protein)               :: 4,425
            Genes (RNA)                       :: 114
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 181
            CDSs (without protein)            :: 181
            Pseudo Genes (ambiguous residues) :: 0 of 181
            Pseudo Genes (frameshifted)       :: 59 of 181
            Pseudo Genes (incomplete)         :: 116 of 181
            Pseudo Genes (internal stop)      :: 24 of 181
            Pseudo Genes (multiple problems)  :: 16 of 181
            Pseudo Genes (short protein)      :: 1 of 181
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026885.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Enterobacter roggenkampii"
                     /mol_type="genomic DNA"
                     /strain="KAM546"
                     /db_xref="taxon:1812935"
                     /plasmid="pKAM546_12"
                     /geo_loc_name="Japan"
                     /collection_date="2020"
     gene            16..480
                     /locus_tag="OO938_RS23545"
     CDS             16..480
                     /locus_tag="OO938_RS23545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001722544.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_264884052.1"
                     /translation="MQEIDRKASKEHEEAKKNSNFTQTYPKGWQRIRELLRDKQGAAAI
                     GLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEEKGALVRIPVAGKVCA
                     YALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSVEESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 ctcaggcaga aagaaataca ggaaatcgac aggaaggcat ctaaagagca cgaggaggcg
       61 aagaagaaca gtaacttcac tcagacatac ccaaagggct ggcaacgcat tagagagctt
      121 ttgagggaca aacagggtgc tgccgctata ggtctttact catttttcgc tgaacatata
      181 gatcctacat gcggtgccgt ggtctgcgac cagcagtttt tagctaatca gatgggtgtt
      241 tctactcgga caattcgtcg ttggttagat tatttggagg agaaaggtgc tttggtaaga
      301 ataccagttg ctggaaaggt ttgtgcttac gctttagatc ctcacgaagt ctggaaggga
      361 tataacacat caaaagacta ctcagccttt gttaccaaga cattagtgaa caaggatgga
      421 gaaataaaac gtcgaataat ggctatgttt tccgtagagg agagcggtca agagcagtaa
      481 cgaagcactc ttgacggatc ggaacgacca ccaccctcgg aaagggggat ggttcgccac
      541 agcgaactat ccccatgata atccgccatt taaatagtag ggagcgatta tataccacca
      601 cccggcaaag gtatcttaat ttataaaata aacaaaacaa tcaaaaacaa acacttaaaa
      661 taaaaaacaa gctacgataa aatatattta tatattttca ttaaatatat ttgattttcc
      721 tattttttaa atatatacat tccattacaa caataaaata ataataaaaa taggagaata
      781 aaatgaatat aaaaataaaa ataaacagat tatgcttaat attaatatgt gtagctttgt
      841 tacgcggtga tagtaataat gaaaaaccac agacgcacta tctggcgccg gttaatataa
      901 taaaaaaaca aaaaccgctt accaagtgca aggcggcgcc acgcgccaca ttgcaccaga
      961 ggtagtttac ccaacagtgc gccgtcaatg ataaataaac tcgcaagctc gtcattgacg
     1021 gtatcaagcc agcatcagtg aatcagtagt gcccgccgca gcctcacggc aggagcgtag
     1081 cgaccgagtg agcgaggagg caccagatca tcagaacttg caggttcttc ttacgctctg
     1141 aggctaaata caacatagcc agtatacact ccgctagcgg agtgactggt tcagggcttc
     1201 gccccgaaac ccctgaaaac cgtcagtcat ggtgatggct cactatgcga gccatcacca
     1261 gatacaaggt taaatgggca ttttgatcgt caaggtcaag ccgctaacgc ggtcgcctat
     1321 ggcgaaccat gaccctcaaa atgcccgacc ggagggaggg agctaccttg aactttggtg
     1381 ttgtttgttg gttttcatag aagagaatag agataaataa taagttattg atttttatag
     1441 ttttgatttt ttctgatagg acaccagctg tgtccgcacg tgcggacacc agctgtgtcc
     1501 gcacgtggct ggacatagga caccacaagt cctatgatgg gacaaaaatg tcctataa
//
