LOCUS       NZ_AP026432             1585 bp    DNA     circular CON 12-OCT-2023
DEFINITION  Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM645
            plasmid pKAM645_12, complete sequence.
ACCESSION   NZ_AP026432
VERSION     NZ_AP026432.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00446298
            Assembly: GCF_024347815.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Complete genome sequence of carbapenem-resistant Klebsiella spp. in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Contact:Shotaro Maehana Kitasato university,
            Allied Health Sciences; 1-15-1, Kitasato, Minami-ku, Sagamihara,
            Kanagawa 252-0373, Japan URL
            :https://www.kitasato-u.ac.jp/ahs/english/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 2.1.1
            Genome Coverage                   :: 101x
            Sequencing Technology             :: Illumina HiSeq; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/12/2023 03:42:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,116
            CDSs (total)                      :: 6,009
            Genes (coding)                    :: 5,826
            CDSs (with protein)               :: 5,826
            Genes (RNA)                       :: 107
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 77 of 183
            Pseudo Genes (incomplete)         :: 115 of 183
            Pseudo Genes (internal stop)      :: 34 of 183
            Pseudo Genes (multiple problems)  :: 35 of 183
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026432.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Klebsiella quasipneumoniae subsp.
                     quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KAM645"
                     /sub_species="quasipneumoniae"
                     /db_xref="taxon:1667327"
                     /plasmid="pKAM645_12"
                     /geo_loc_name="Japan"
                     /collection_date="2020"
     gene            1..510
                     /locus_tag="OCV84_RS30540"
                     /old_locus_tag="KAM645c_59480"
     CDS             1..510
                     /locus_tag="OCV84_RS30540"
                     /old_locus_tag="KAM645c_59480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_069377321.1"
                     /translation="MIVASEHQAKLRQKEIQEIDRKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELLRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMGVSTRTIRRWLDYLEE
                     KGALVRIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSVE
                     ESGQEQ"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 atgatcgtag cttcagaaca ccaagcaaag ctcaggcaga aagaaataca ggaaatcgac
       61 aggaaggcat ctaaagagca cgaggaggcg aagaagaaca gtaacttcac tcagacatac
      121 ccaaagggct ggcaacgcat tagagagctt ttgagggaca aacagggtgc tgccgctata
      181 ggtctttact catttttcgc tgaacatata gatcctacat gcggtgccgt ggtctgcgac
      241 cagcagtttt tagctaatca gatgggtgtt tctactcgga caattcgtcg ttggttagat
      301 tatttggagg agaaaggtgc tttggtaaga ataccagttg ctggaaaggt ttgtgcttac
      361 gctttagatc ctcacgaagt ctggaaggga tataacacat caaaagacta ctcagccttt
      421 gttaccaaga cattagtgaa caaggatgga gaaataaaac gtcgaataat ggctatgttt
      481 tccgtagagg agagcggtca agagcagtaa cgaagcgact cttgacggat cggaacgacc
      541 accaccctcg gaaaggggga tggttcgcca cagcgaacta tccccatgat aatccgccat
      601 ttaaatagta gggagcgatt atataccacc acccggcaaa ggtatcttaa tttataaaat
      661 aaacaaaaca atcaaaaaca aacacttaaa ataaaaaaca agctacgata aaatatattt
      721 atatattttc attaaatata tttgattttc ctatttttta aatatataca ttccattaca
      781 acaataaaat aataataaaa ataggagaat aaaatgaata taaaaataaa aataaacaga
      841 ttatgcttaa tattaatatg tgtagctttg ttacgcggtg atagtaataa tgaaaaacca
      901 cagacgcact atctggcgcc ggttaatata ataaaaaaac aaaaaccgct taccaagtgc
      961 aaggcggcgc cacgcgccac attgcaccag aggtagttta cccaacagtg cgccgtcaat
     1021 gataaataaa ctcgcaagct cgtcattgac ggtatcaagc cagcatcagt gaatcagtag
     1081 tgcccgccgc agcctcacgg caggagcgta gcgaccgagt gagcgaggag gcaccagatc
     1141 atcagaactt gcaggttctt cttacgctct gaggctaaat acaacatagc cagtatacac
     1201 tccgctagcg gagtgactgg ttcagggctt cgccccgaaa cccctgaaaa ccgtcagtca
     1261 tggtgatggc tcactatgcg agccatcacc agatacaagg ttaaatgggc attttgatcg
     1321 tcaaggtcaa gccgctaacg cggtcgccta tggcgaacca tgaccctcaa aatgcccgac
     1381 cggagggagg gagctacctt gaactttggt gttgtttgtt ggttttcata gaagagaata
     1441 gagataaata ataagttatt gatttttata gttttgattt tttctgatag gacaccagct
     1501 gtgtccgcac gtgcggacac cagctgtgtc cgcacgtggc tggacatagg acaccacaag
     1561 tcctaaaaga caccgaggga taaag
//
