LOCUS       NZ_AP026429             3093 bp    DNA     circular CON 12-OCT-2023
DEFINITION  Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM645
            plasmid pKAM645_9, complete sequence.
ACCESSION   NZ_AP026429
VERSION     NZ_AP026429.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00446298
            Assembly: GCF_024347815.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Complete genome sequence of carbapenem-resistant Klebsiella spp. in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 3093)
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Contact:Shotaro Maehana Kitasato university,
            Allied Health Sciences; 1-15-1, Kitasato, Minami-ku, Sagamihara,
            Kanagawa 252-0373, Japan URL
            :https://www.kitasato-u.ac.jp/ahs/english/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 2.1.1
            Genome Coverage                   :: 101x
            Sequencing Technology             :: Illumina HiSeq; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 10/12/2023 03:42:49
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,116
            CDSs (total)                      :: 6,009
            Genes (coding)                    :: 5,826
            CDSs (with protein)               :: 5,826
            Genes (RNA)                       :: 107
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 76
            ncRNAs                            :: 6
            Pseudo Genes (total)              :: 183
            CDSs (without protein)            :: 183
            Pseudo Genes (ambiguous residues) :: 0 of 183
            Pseudo Genes (frameshifted)       :: 77 of 183
            Pseudo Genes (incomplete)         :: 115 of 183
            Pseudo Genes (internal stop)      :: 34 of 183
            Pseudo Genes (multiple problems)  :: 35 of 183
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026429.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3093
                     /organism="Klebsiella quasipneumoniae subsp.
                     quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KAM645"
                     /sub_species="quasipneumoniae"
                     /db_xref="taxon:1667327"
                     /plasmid="pKAM645_9"
                     /geo_loc_name="Japan"
                     /collection_date="2020"
     gene            complement(join(2474..3093,1..313))
                     /locus_tag="OCV84_RS30495"
     CDS             complement(join(2474..3093,1..313))
                     /locus_tag="OCV84_RS30495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_261902566.1"
                     /translation="MATYHLSVKFGGKGKALAHASYITREDKFSQRQDLEHTEHGNMPE
                     WARDEPAHFWQAADAFERANGSTYREIEIALPRELNEAQRLALVRDFVKQETGDKHAWT
                     SIHNPKASIDGGEQPHAHIMMSQRVNDGIERSPEQYFRRYNAKFPARGGARKDSGHNLT
                     PTEQKQALKALRERWERTHNAHMKRYGFEQGFIDSRSLKTQGIDRKPEQHLGFEAAGRL
                     DDSQRQDIKDSRTFSVVDVPEQAKHIDHSDRSWMNASGIEVNRKELVRSLTHDISQQYG
                     REMAARVTKQGNVEIERVKSLSRGFSISR"
                     /name="MobA/MobL family protein"
     gene            480..866
                     /locus_tag="OCV84_RS30500"
                     /old_locus_tag="KAM645c_59430"
     CDS             480..866
                     /locus_tag="OCV84_RS30500"
                     /old_locus_tag="KAM645c_59430"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_045282373.1"
                     /translation="MRISNVEWLKKRIAFIRKLGEKTARQRQIIDLLDDEASLSETERR
                     LLHVLATAEKNALQERDAAQKKAVQARISGQKNRRERNHRLFLAAGLMIDAGLVDTKTG
                     ELNFDHEKLLTALKRVRYDLETSA"
                     /name="hypothetical protein"
     gene            complement(1941..2471)
                     /locus_tag="OCV84_RS30505"
                     /old_locus_tag="KAM645c_59440"
     CDS             complement(1941..2471)
                     /locus_tag="OCV84_RS30505"
                     /old_locus_tag="KAM645c_59440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000168766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_012634455.1"
                     /translation="MASTEEKLLTLLLSAEHLKEAAKEQQKAVADSLAVARETLKGYRE
                     ISDSVAQQVRDEVRQEVQKMDVAGLIGERISADFQRLEKSVGNMKINADALDKEISIIR
                     SNIIAEYNTLRGYSWKWFAGVAVAFVVLIFATSWFVKTELQDNYNASAAVYQKVADLEK
                     LLTTEQKPEKKKN"
                     /name="hypothetical protein"
     Typing          complement(3..313)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="89.423"
                     /coverage="99.0"
                     /evalue="1.46e-56"
     Typing          complement(2478..3091)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.049"
                     /coverage="99.0"
                     /evalue="9.92e-137"
ORIGIN
        1 acgtccatgc atgtttgtcg cccgtttcct gcttcacaaa atcccggaca agcgccagcc
       61 gctgcgcttc attcagctcg cggggtagag cgatctcaat ttccctgtac gttgaaccgt
      121 tggcacgttc gaacgcatcc gcagcctgcc agaaatgggc gggttcatct ctcgcccatt
      181 ccggcatatt gccgtgttcg gtgtgctcga gatcctggcg ctggctgaac ttatcttccc
      241 gcgtaatgta actggcatga gcaagggctt tacccttgcc gccaaatttc acgctgagat
      301 gatacgttgc catgttgtgt cagcccccgg cagggcgcac tgtttctgcc cgcagggaga
      361 aacatataag tgcgctttgc tctaatttaa agaattatga gtaaagataa gtcatgcgac
      421 ttctgaccgc aagttatata ctttccccgt cggaaatatc gggatgggga agttaaacga
      481 tgcggatcag taacgtcgaa tggcttaaaa agcgcatagc cttcatcaga aagctgggag
      541 aaaaaacggc acggcaacgg cagattatcg atctgctgga tgatgaagct tcgctcagtg
      601 agactgaaag acgactgctc cacgttctgg caaccgctga aaaaaacgcg ttgcaggaac
      661 gggatgccgc acagaaaaag gcggttcagg cgcggatttc agggcagaaa aaccgcaggg
      721 aacgcaatca cagactgttt ctggcggctg gtctgatgat tgacgcggga ctggttgata
      781 caaaaacggg tgagttgaat tttgaccacg aaaaattact gactgcgctg aaacgggtac
      841 gctacgatct ggaaacatcg gcgtgaacgt gcattctgca aggccggaga aatgccgctt
      901 cctcgctcac tgactcgcgt cgctcggtcg ttcggctgcg gcgagcggta gggattttcg
      961 gataggagca tgaattttct tgctccagat gtacaaaagc cccgtgacag aatcacgggg
     1021 cttgagtact ctaattcttg cagatacctg ccaggatcag acgtcacaat caaatcctag
     1081 cagggctggc taggaatgtc actaccagct taataccatt caacgacatt aaacccatat
     1141 ctgcaccttg actctcaggt ctacgccccg gactccggca ggataaacag gcaagcggtg
     1201 ggaacctgac cagctcggga aagaagctgg ctctacccgg tctcacgtta accaataacg
     1261 tacctgataa agtgagagtg aaggcagcgg ttgcggtgaa gcgtgattgc caaggtctgg
     1321 cgcaacaccc acaaaatcga agcagcatac gaacggcctg atgctggtcg cttcgctccc
     1381 cgttttctgg tgtacccacc acgggggcat taggctttct ttgccctaat atggtattct
     1441 ccggcgtggg gggggatgca ttttgacaga aatggaaata agtaacatcc ggaatattac
     1501 gcttattgcc cggcgtcttg cctggattaa tgccaaaaga actcatatcg atataccatc
     1561 gtttgcagaa ctgcttttct ccggccaaaa agcgctgttc ttcgaacaat ataattattt
     1621 tcactcacga cggtacacaa cggcaggcac gtcaaagcca ccggatttac cataacatcc
     1681 gttacgcgca ccgctgaaac gcgctcaggg cggttttacg tcctgagcca taaaaacccc
     1741 cggcttctca ccgaaaaccg ctcagaatcg cataccgtga ttttcagccc catgcataac
     1801 catgcacctg actgactggc gagaacttcc ggcctgaatt caggccggaa gtctcaaaag
     1861 acgccccaaa ctcggctgaa aacggtgaac gggtgcgcaa tttattgtgc gaacgtgagg
     1921 cgttggacaa gcgcagcgcg tcagttcttt ttcttttccg gtttctgttc cgttgtcagc
     1981 agcttttcaa ggtctgccac tttctgatag acggcagcag acgcgttgta attgtcctgt
     2041 agttccgttt tcacaaacca gcttgtggca aatatcagta cgacaaaggc aaccgcaacc
     2101 ccagcaaacc acttccagct gtaaccccgc agcgtgttgt actccgcgat gatgttactg
     2161 cggataatgg aaatttcctt gtccagcgcg tccgcattga ttttcatgtt cccgacggat
     2221 ttttccagac gctgaaaatc agcgctgata cgctcgccaa tcagccccgc aacatccatt
     2281 ttctgcactt cctgccggac ttcatccctt acctgctgtg ccacactgtc cgatatttcc
     2341 cggtagcctt tcagggtttc ccttgccacc gccagcgaat ccgccacggc tttctgctgc
     2401 tcttttgcgg cctctttcag atgctccgcc gacagcagga gtgtgagaag tttttcttcg
     2461 gtgctcgcca tagttacctg cttatggaaa atccgcgtga cagggatttc acgcgctcta
     2521 tttcaacatt tccctgtttt gtgacccgtg cagccatctc ccgcccgtac tgctgcgaga
     2581 tatcatgcgt cagagatctg accagttcct tccggtttac ctcgataccg ctggcattca
     2641 tccagctacg gtcgctgtgg tcgatatgtt tcgcctgttc aggcacatcc acgactgaaa
     2701 acgtccggct gtctttaata tcctgcctct ggctgtcgtc cagtcgtccg gctgcttcaa
     2761 aaccgagatg ctgttccggt ttccggtcga taccctgtgt tttcagtgac cggctatcaa
     2821 taaaaccctg ctcaaagcca tatcgtttca tatgcgcgtt gtgcgtacgc tcccagcgct
     2881 cccgcagggc tttcagtgcc tgtttttgtt ctgtaggggt taaattatgc cctgagtcct
     2941 tgcgcgcgcc gccacgcgcc ggaaatttgg cgttatagcg cctgaaatac tgttcgggac
     3001 tgcgctcaat accgtcattg acgcgctggc tcatcatgat atgggcgtgc ggctgttcgc
     3061 cgccgtcaat gctggctttc ggattgtgga tcg
//
