LOCUS       NZ_AP026419             1597 bp    DNA     circular CON 16-APR-2024
DEFINITION  Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM644
            plasmid pKAM644_12, complete sequence.
ACCESSION   NZ_AP026419
VERSION     NZ_AP026419.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMD00446297
            Assembly: GCF_024347795.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella quasipneumoniae subsp. quasipneumoniae
  ORGANISM  Klebsiella quasipneumoniae subsp. quasipneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Complete genome sequence of carbapenem-resistant Klebsiella spp. in
            Japan
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 1597)
  AUTHORS   Maehana,S., Suzuki,M. and Kitasato,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-JUL-2022) Contact:Shotaro Maehana Kitasato university,
            Allied Health Sciences; 1-15-1, Kitasato, Minami-ku, Sagamihara,
            Kanagawa 252-0373, Japan URL
            :https://www.kitasato-u.ac.jp/ahs/english/index.html
COMMENT     ##Genome-Assembly-Data-START##
            Assembly Method                   :: Canu v. 2.1.1
            Genome Coverage                   :: 189x
            Sequencing Technology             :: Illumina HiSeq; ONT MinION
            ##Genome-Assembly-Data-END##
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_024347795.1-RS_2024_04_16
            Annotation Date                   :: 04/16/2024 09:13:03
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 6,149
            CDSs (total)                      :: 6,034
            Genes (coding)                    :: 5,821
            CDSs (with protein)               :: 5,821
            Genes (RNA)                       :: 115
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 213
            CDSs (without protein)            :: 213
            Pseudo Genes (ambiguous residues) :: 0 of 213
            Pseudo Genes (frameshifted)       :: 99 of 213
            Pseudo Genes (incomplete)         :: 134 of 213
            Pseudo Genes (internal stop)      :: 36 of 213
            Pseudo Genes (multiple problems)  :: 46 of 213
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            AP026419.1.
            Annotated by DFAST https://dfast.ddbj.nig.ac.jp/
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Klebsiella quasipneumoniae subsp.
                     quasipneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KAM644"
                     /sub_species="quasipneumoniae"
                     /db_xref="taxon:1667327"
                     /plasmid="pKAM644_12"
                     /geo_loc_name="Japan"
                     /collection_date="2020"
     gene            join(1333..1597,1..230)
                     /locus_tag="P4I75_RS30705"
     CDS             join(1333..1597,1..230)
                     /locus_tag="P4I75_RS30705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="WP_276097519.1"
                     /translation="MIVASEHQAKLRQKEIQEIDRKASKEHEEAKKNSNFTQTYPKGWQ
                     RIRELLRDKQGAAAIGLYSFFAEHIDPTCGAVVCDQQFLANQMAIRRWLDYLEEKGALV
                     RIPVAGKVCAYALDPHEVWKGYNTSKDYSAFVTKTLVNKDGEIKRRIMAMFSVEESGQE
                     Q"
                     /name="helix-turn-helix domain-containing protein"
ORIGIN
        1 caattcgtcg ttggttagat tatttggagg agaaaggtgc tttggtaaga ataccagttg
       61 ctggaaaggt ttgtgcttac gctttagatc ctcacgaagt ctggaaggga tataacacat
      121 caaaagacta ctcagccttt gttaccaaga cattagtgaa caaggatgga gaaataaaac
      181 gtcgaataat ggctatgttt tccgtagagg agagcggtca agagcagtaa cgaagcgact
      241 cttgacggat cggaacgacc accaccctcg gaaaggggga tggttcgcca cagcgaacta
      301 tccccatgat aatccgccat ttaaatagta gggagcgatt atataccacc acccggcaaa
      361 ggtatcttaa tttataaaat aaacaaaaca atcaaaaaca aacacttaaa ataaaaaaca
      421 agctacgata aaatatattt atatattttc attaaatata tttgattttc ctatttttta
      481 aatatataca ttccattaca acaatataaa ataataataa aaataggaga ataaaatgaa
      541 tataaaaata aaaataaaca gattatgctt aatattaata tgtgtagctt tgttacgcgg
      601 tgatagtaat aatgaaaaac cacagacgca ctatctggcg ccggttaata taataaaaaa
      661 acaaaaaccg cttaccaagt gcaaggcggc gccacgcgcc acattgcacc agaggtagtt
      721 tacccaacag tgcgccgtca atgataaata aactcgcaag ctcgtcattg acggtatcaa
      781 gccagcatca gtgaatcagt agtgcccgcc gcagcctcac ggcaggagcg tagcgaccga
      841 gtgagcgagg aggcaccaga tcatcagaac ttgcaggttc ttcttacgct ctgaggctaa
      901 atacaacata gccagtatac actccgctag cggagtgact ggttcagggc ttcgccccga
      961 aacccctgaa aaccgtcagt catggtgatg gctcactatg cgagccatca ccagatacaa
     1021 ggttaaatgg gcattttgat cgtcaaggtc aagccgctaa cgcggtcgcc tatggcgaac
     1081 catgaccctc aaaatgcccg accggaggga gggagctacc ttgaactttg gtgttgtttg
     1141 ttggttttca tagaagagaa tagagataaa taataagtta ttgattttta tagttttgat
     1201 tttttctgat aggacaccag ctgtgtccgc acgtgcggac accagctgtg tccgcacgtg
     1261 gctggacata ggacaccaca agtcctatga tgggacaaaa atgtcctata aaaaagacac
     1321 cgagggataa agatgatcgt agcttcagaa caccaagcaa agctcaggca gaaagaaata
     1381 caggaaatcg acaggaaggc atctaaagag cacgaggagg cgaagaagaa cagtaacttc
     1441 actcagacat acccaaaggg ctggcaacgc attagagagc ttttgaggga caaacagggt
     1501 gctgccgcta taggtcttta ctcatttttc gctgaacata tagatcctac atgcggtgcc
     1561 gtggtctgcg accagcagtt tttagctaat cagatgg
//
